Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Forward (+)

15443940 .. 15444873

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1159100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTGCATCTCCCCCACGAGTATAGCAAAACCTCTGTGTCTTGTGAAAGAGACCCGAAACAAGGCCGTATCGGCCGGCGCACGGGCTGACTGTGCCGCTGCTGGTGAAGACGATTCTGAAGATCTTGGATCGGGCGACGGAGTACGCGGCGGGAGAGCCGCTGTCGTTGTGCTACAATACCTCGCCGCTGAGGTGTTGGAGCTCGCTGGAAACGCTGCAAGGGACAACAAGAAGAACCGCATTATTCGTGGCCCGAGTGCCCTTTTGAAATTTCACTTTTTTTTTTCTGTTTCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

100

Amino Acids

10.37

Weight (kDa)

8.55

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AciI	CCGC	6 cut(s)	96, 147, 150, 159, 186, 238
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	61, 81
AgsI	TTSAA	1 cut(s)	268
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	3 cut(s)	63, 72, 250
ApeKI	GCWGC	2 cut(s)	98, 215
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	85, 202
BceAI	ACGGC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	71
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	6 cut(s)	96, 99, 148, 159, 186, 216
BlsI	GCNGC	6 cut(s)	97, 100, 149, 160, 187, 217
BmeT110I	CYCGRG	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	251
BmsI	GCATC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 81
Bse118I	RCCGGY	1 cut(s)	74
BseLI	CCNNNNNNNGG	2 cut(s)	61, 81
BseMII	CTCAG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	262
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	85, 202
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	65, 74, 252
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	61, 81
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	3 cut(s)	65, 74, 252
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	204, 262
Bsp143I	GATC	2 cut(s)	121, 128
BspACI	CCGC	6 cut(s)	96, 147, 150, 159, 186, 238
BspANI	GGCC	3 cut(s)	65, 74, 252
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	147
BspPI	GGATC	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	2 cut(s)	121, 128
BssSI	CACGAG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	76, 204
BstDEI	CTNAG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	124, 131
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	121, 128
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 92, 212
BstSLI	GKGCMC	1 cut(s)	262
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	85, 202
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	65, 74, 252
Cac8I	GCNNGC	2 cut(s)	76, 204
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	143
CviJI	RGCY	6 cut(s)	65, 74, 86, 158, 202, 252
CviKI_1	RGCY	6 cut(s)	65, 74, 86, 158, 202, 252
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	123, 130
DpnII	GATC	2 cut(s)	121, 128
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	44
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	204
FaiI	YATR	1 cut(s)	23
FaqI	GGGAC	1 cut(s)	236
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	6 cut(s)	96, 99, 148, 159, 186, 216
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	6 cut(s)	96, 99, 148, 159, 186, 216
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	6 cut(s)	96, 99, 148, 159, 186, 216
HaeIII	GGCC	3 cut(s)	65, 74, 252
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	6, 218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 92, 212
HpyF3I	CTNAG	1 cut(s)	189
HspAI	GCGC	1 cut(s)	78
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	121, 128
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	3 cut(s)	87, 88, 192
Lsp1109I	GCAGC	2 cut(s)	85, 202
LweI	GCATC	1 cut(s)	15
MalI	GATC	2 cut(s)	123, 130
MboI	GATC	2 cut(s)	121, 128
MboII	GAAGA	3 cut(s)	119, 131, 244
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	204, 262
MluCI	AATT	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	3 cut(s)	42, 184, 191
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	298
MspA1I	CMGCKG	3 cut(s)	98, 161, 188
MspI	CCGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	71, 92, 212
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	2 cut(s)	121, 128
NgoMIV	GCCGGC	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	6 cut(s)	97, 100, 149, 160, 187, 217
Psp124BI	GAGCTC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	298
SatI	GCNGC	6 cut(s)	96, 99, 148, 159, 186, 216
Sau3AI	GATC	2 cut(s)	121, 128
Sau96I	GGNCC	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	204, 262
SetI	ASST	4 cut(s)	34, 183, 195, 204
SfaNI	GCATC	1 cut(s)	15
SfiI	GGCCNNNNNGGCC	1 cut(s)	71
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	6 cut(s)	96, 147, 150, 159, 186, 238
SstI	GAGCTC	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	92
TasI	AATT	1 cut(s)	269
TauI	GCSGC	4 cut(s)	98, 150, 161, 188
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TseI	GCWGC	2 cut(s)	98, 215
TspGWI	ACGGA	1 cut(s)	153
XapI	RAATTY	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.