Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Reverse (-)

20414316 .. 20415287

Gene Structure 972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAGTTCCGGCGCCGGCAGTGGAACAACTAAAGGTGGCAGAGGAAAGCCAAAAGCTACAAAGTCCGTCTCTCGATCTTCTAAAGCTGGTCTTCAATTTCCCGTTGGAAGAATCGCTAGATTCCTTAAAGCCGGTAAATACGCCGAACGTGTTGGTGCCGGTGCTCCCGTTTATCTCTCCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAGCTAGCTGGAAATGCAGCAAGAGATAACAAGAAGACACGTATCGTACCACGGCACATTCAGCTTGCAGTGAGGAACGATGAAGAGCTTAGTAAACTTCTTGGAAGTGTAACAATTGCTAATGGAGGAGTTTTGCCCAACATTCATCAGACTCTTCTCCCATCAAAGGTTGGAAAGAACAAAGGCGATATCGGATCTGCTTCTCAAGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

142

Amino Acids

14.78

Weight (kDa)

10.32

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	17 - 96	3.1e-14	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	99 - 132	1.7e-17	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	11, 155
AciI	CCGC	2 cut(s)	180, 201
AclWI	GGATC	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	379
AflIII	ACRYGT	2 cut(s)	148, 251
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	6 cut(s)	56, 86, 217, 221, 277, 301
AluI	AGCT	6 cut(s)	56, 86, 217, 221, 277, 301
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	14
AsuNHI	GCTAGC	1 cut(s)	217
BanI	GGYRCC	2 cut(s)	11, 155
BbsI	GAAGAC	2 cut(s)	83, 254
Bbv12I	GWGCWC	1 cut(s)	166
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	2 cut(s)	167, 281
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	117, 218
BfoI	RGCGCY	1 cut(s)	15
BisI	GCNGC	2 cut(s)	201, 231
BlsI	GCNGC	2 cut(s)	202, 232
BmiI	GGNNCC	2 cut(s)	13, 157
BmtI	GCTAGC	1 cut(s)	221
BpiI	GAAGAC	2 cut(s)	83, 254
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	402
BsaAI	YACGTR	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse118I	RCCGGY	3 cut(s)	14, 131, 158
BseDI	CCNNGG	1 cut(s)	263
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	242
BshNI	GGYRCC	2 cut(s)	11, 155
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	4 cut(s)	9, 15, 132, 159
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	74, 407
BspACI	CCGC	2 cut(s)	180, 201
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	13, 157
BspOI	GCTAGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	415
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	2 cut(s)	11, 155
BsrFI	RCCGGY	3 cut(s)	14, 131, 158
BssAI	RCCGGY	3 cut(s)	14, 131, 158
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	2 cut(s)	74, 407
BssNI	GRCGYC	1 cut(s)	12
Bst6I	CTCTTC	2 cut(s)	291, 372
BstACI	GRCGYC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	16, 219, 279
BstDEI	CTNAG	2 cut(s)	204, 302
BstDSI	CCRYGG	1 cut(s)	263
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	2 cut(s)	77, 410
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	2 cut(s)	74, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 274
BstV1I	GCAGC	1 cut(s)	242
BstV2I	GAAGAC	2 cut(s)	83, 254
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	263
BtsI	GCAGTG	2 cut(s)	25, 288
BtsIMutI	CAGTG	2 cut(s)	25, 288
Cac8I	GCNNGC	3 cut(s)	16, 219, 279
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	3 cut(s)	14, 131, 158
Csp6I	GTAC	1 cut(s)	260
CviJI	RGCY	8 cut(s)	49, 56, 86, 131, 217, 221, 277, 301
CviKI_1	RGCY	8 cut(s)	49, 56, 86, 131, 217, 221, 277, 301
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	204, 302
DinI	GGCGCC	1 cut(s)	13
DpnI	GATC	2 cut(s)	76, 409
DpnII	GATC	2 cut(s)	74, 407
Eam1104I	CTCTTC	2 cut(s)	291, 372
EarI	CTCTTC	2 cut(s)	291, 372
EciI	GGCGGA	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	403
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	73
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
Fnu4HI	GCNGC	2 cut(s)	201, 231
Fsp4HI	GCNGC	2 cut(s)	201, 231
FspBI	CTAG	2 cut(s)	117, 218
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	201, 231
HaeII	RGCGCY	1 cut(s)	15
HapII	CCGG	4 cut(s)	9, 15, 132, 159
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	111, 120, 364
HpaII	CCGG	4 cut(s)	9, 15, 132, 159
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	363, 407
Hpy188III	TCNNGA	3 cut(s)	72, 188, 419
Hpy8I	GTNNAC	1 cut(s)	308
HpyCH4IV	ACGT	2 cut(s)	148, 253
HpyCH4V	TGCA	2 cut(s)	230, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 274
HpyF3I	CTNAG	2 cut(s)	204, 302
HpySE526I	ACGT	2 cut(s)	148, 253
Hsp92I	GRCGYC	1 cut(s)	12
HspAI	GCGC	1 cut(s)	12
KasI	GGCGCC	1 cut(s)	11
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	74, 407
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	169, 214
LpnPI	CCDG	6 cut(s)	22, 28, 72, 145, 172, 207
Lsp1109I	GCAGC	1 cut(s)	242
MaeI	CTAG	2 cut(s)	117, 218
MaeII	ACGT	2 cut(s)	148, 253
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	76, 409
MboI	GATC	2 cut(s)	74, 407
MboII	GAAGA	6 cut(s)	69, 83, 120, 259, 308, 359
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	95, 327
Mly113I	GGCGCC	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	2 cut(s)	85, 364
MnlI	CCTC	5 cut(s)	35, 199, 206, 279, 332
MroNI	GCCGGC	1 cut(s)	14
MseI	TTAA	2 cut(s)	126, 427
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	4 cut(s)	9, 15, 132, 159
MunI	CAATTG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	227, 274
NaeI	GCCGGC	1 cut(s)	16
NarI	GGCGCC	1 cut(s)	12
NdeII	GATC	2 cut(s)	74, 407
NgoMIV	GCCGGC	1 cut(s)	14
NheI	GCTAGC	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	13, 157
PciSI	GCTCTTC	1 cut(s)	291
PdiI	GCCGGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	111, 120
PkrI	GCNGC	2 cut(s)	202, 232
PleI	GAGTC	1 cut(s)	358
PluTI	GGCGCC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	13, 157
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	126, 427
SatI	GCNGC	2 cut(s)	201, 231
Sau3AI	GATC	2 cut(s)	74, 407
SchI	GAGTC	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	166
SfoI	GGCGCC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	2 cut(s)	95, 327
SsiI	CCGC	2 cut(s)	180, 201
SspDI	GGCGCC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	117, 218
TaiI	ACGT	2 cut(s)	151, 256
TaqI	TCGA	2 cut(s)	73, 189
TasI	AATT	2 cut(s)	95, 327
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	111, 120
Tru1I	TTAA	2 cut(s)	126, 427
Tru9I	TTAA	2 cut(s)	126, 427
TscAI	CASTG	2 cut(s)	25, 288
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	309, 347
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	25, 288
XspI	CTAG	2 cut(s)	117, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.