Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Reverse (-)

3430802 .. 3431972

Gene Structure 1171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G003990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGTGGAAAGGAAGGTGGGTCGACTAAGGGTGGCAGAGGCAAGCCGAAGGCCACCAAGTCTGTGTCCAGGTCTAGCAAAGCCGGGCTTCAATTTCCGGTGGGTAGGATCGCCCGGTTTCTCAAGTCCGGCAAGTATGCCGAGCGTGTCGGCGCCGGAGCTCCGGTTTATCTCTCTGCCGTGCTTGAATACCTGGCAGCTGAGGTTTTGGAACTTGCTGGCAACGCAGCTAGAGACAACAAGAAGAATCGTATTGTACCGAGGCACATTCAGCTTGCGGTGAGGAATGACGAGGAGCTAAGCAAGCTTTTGGGGTCTGTGACTATTGCCAATGGAGGAGTTTTGCCCAACATTCACCAAACTCTTTTGCCTAAGAAGGTTGGGAAAGGCAAGGGCGATATCGGATCCGCTTCTCAGGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

141

Amino Acids

14.79

Weight (kDa)

10.28

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	16 - 95	7.9e-15	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	98 - 131	2.4e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	2 cut(s)	278, 408
AclWI	GGATC	3 cut(s)	116, 399, 412
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	92, 188
AjnI	CCWGG	2 cut(s)	68, 192
AluBI	AGCT	6 cut(s)	161, 200, 230, 274, 298, 307
AluI	AGCT	6 cut(s)	161, 200, 230, 274, 298, 307
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	3 cut(s)	116, 399, 412
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	197, 227
AspLEI	GCGC	1 cut(s)	155
AsuC2I	CCSGG	2 cut(s)	85, 115
AsuHPI	GGTGA	2 cut(s)	292, 347
BamHI	GGATCC	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	209, 239
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	2 cut(s)	70, 194
BcnI	CCSGG	2 cut(s)	85, 115
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	3 cut(s)	75, 231, 424
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	2 cut(s)	198, 228
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	2 cut(s)	199, 229
Bme1390I	CCNGG	4 cut(s)	70, 85, 115, 194
BmiI	GGNNCC	2 cut(s)	154, 406
BmrFI	CCNGG	4 cut(s)	70, 85, 115, 194
Bpu10I	CCTNAGC	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	85, 115
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	2 cut(s)	97, 163
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
BseBI	CCWGG	2 cut(s)	70, 194
BseDI	CCNNGG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	2 cut(s)	308, 351
BseXI	GCAGC	2 cut(s)	209, 239
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	6 cut(s)	84, 98, 115, 129, 156, 164
BsmAI	GTCTC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	108, 404
Bsp1720I	GCTNAGC	1 cut(s)	299
BspACI	CCGC	2 cut(s)	278, 408
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	154, 406
BspPI	GGATC	3 cut(s)	116, 399, 412
BspT107I	GGYRCC	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	108, 404
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	70, 194
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	4 cut(s)	44, 220, 276, 305
BstDEI	CTNAG	5 cut(s)	27, 201, 299, 372, 414
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	111, 407
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	2 cut(s)	108, 404
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 271, 304
BstNI	CCWGG	2 cut(s)	70, 194
BstSCI	CCNGG	4 cut(s)	68, 83, 113, 192
BstV1I	GCAGC	2 cut(s)	209, 239
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	53
Cac8I	GCNNGC	4 cut(s)	44, 220, 276, 305
CfoI	GCGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	257
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	5 cut(s)	27, 201, 299, 372, 414
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	2 cut(s)	110, 406
DpnII	GATC	2 cut(s)	108, 404
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco32I	GATATC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	68, 192
EcoRV	GATATC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	163
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
FaiI	YATR	1 cut(s)	138
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	198, 228
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	198, 228
FspBI	CTAG	3 cut(s)	75, 231, 424
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	198, 228
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	6 cut(s)	84, 98, 115, 129, 156, 164
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	153
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	6 cut(s)	84, 98, 115, 129, 156, 164
HphI	GGTGA	2 cut(s)	292, 347
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	3 cut(s)	8, 43, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 271, 304
HpyF3I	CTNAG	5 cut(s)	27, 201, 299, 372, 414
Hsp92I	GRCGYC	1 cut(s)	153
HspAI	GCGC	1 cut(s)	153
KasI	GGCGCC	1 cut(s)	152
Kzo9I	GATC	2 cut(s)	108, 404
LmnI	GCTCC	3 cut(s)	158, 166, 295
Lsp1109I	GCAGC	2 cut(s)	209, 239
MaeI	CTAG	3 cut(s)	75, 231, 424
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	2 cut(s)	110, 406
MboI	GATC	2 cut(s)	108, 404
MboII	GAAGA	1 cut(s)	256
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	92
Mly113I	GGCGCC	1 cut(s)	153
MnlI	CCTC	6 cut(s)	32, 196, 255, 276, 286, 329
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	6 cut(s)	84, 98, 115, 129, 156, 164
MspR9I	CCNGG	4 cut(s)	70, 85, 115, 194
MvaI	CCWGG	2 cut(s)	70, 194
MwoI	GCNNNNNNNGC	3 cut(s)	224, 271, 304
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	2 cut(s)	85, 115
NdeII	GATC	2 cut(s)	108, 404
NlaIV	GGNNCC	2 cut(s)	154, 406
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	199, 229
PluTI	GGCGCC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	68, 192
PspGI	CCWGG	2 cut(s)	68, 192
PspN4I	GGNNCC	2 cut(s)	154, 406
PsuI	RGATCY	1 cut(s)	404
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	163
SalI	GTCGAC	1 cut(s)	22
SatI	GCNGC	2 cut(s)	198, 228
Sau3AI	GATC	2 cut(s)	108, 404
ScrFI	CCNGG	4 cut(s)	70, 85, 115, 194
SduI	GDGCHC	1 cut(s)	163
SfoI	GGCGCC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	2 cut(s)	278, 408
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	3 cut(s)	75, 231, 424
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	4 cut(s)	68, 83, 113, 192
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	197, 227
Tsp45I	GTSAC	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	23
XspI	CTAG	3 cut(s)	75, 231, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.