Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Forward (+)

21554579 .. 21555422

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G250000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGCTCCACAGCAGCAGCCACCACCAAATCAGGCAGAGGCAACGTCAGAGGCACCAAGTCGGTCTCAAGATCCCAGAAGGCCGGTCTGCAATTCCCGGTCGGTCGCGTCGCCCGGTTCCTCAAGGCCGGTCGGTACGCTCAACGAGTCGGCAGTGGCTCCCCGGTCTACCTCTCTGCTGTCCTCGAATACCTAGCTGCTGAGGTTCTGGAGTTGGCAGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCACTCCGAGACACATTCAGCTTGCAGTGAGAAATGATGAGGAGTTTACGAGGCTTTTGGGGTCTGTGACGATAGCTAATGGAGGTGTTCTGCCTAATATTCATCACAATCTGCTTCCAAAGAAGGGTGGCAAAGCAAAGGGCGAGATTGGTTCTGCTTCCCAGGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

142

Amino Acids

14.97

Weight (kDa)

10.81

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	108
AclWI	GGATC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	4 cut(s)	6, 197, 274, 329
AluI	AGCT	4 cut(s)	6, 197, 274, 329
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	70, 256
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	2 cut(s)	81, 126
ApeKI	GCWGC	4 cut(s)	14, 17, 197, 227
AsuC2I	CCSGG	3 cut(s)	98, 115, 164
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	26, 29, 184, 214
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	3 cut(s)	98, 115, 164
BcoDI	GTCTC	2 cut(s)	70, 256
BfaI	CTAG	2 cut(s)	194, 424
BisI	GCNGC	4 cut(s)	15, 18, 198, 228
BlsI	GCNGC	4 cut(s)	16, 19, 199, 229
Bme1390I	CCNGG	4 cut(s)	98, 115, 164, 416
BmiI	GGNNCC	3 cut(s)	55, 119, 160
BmrFI	CCNGG	4 cut(s)	98, 115, 164, 416
BpmI	CTGGAG	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	52, 107
BpuMI	CCSGG	3 cut(s)	98, 115, 164
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	162, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	2 cut(s)	83, 128
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	162, 414
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	4 cut(s)	26, 29, 184, 214
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	3 cut(s)	102, 106, 133
BshFI	GGCC	2 cut(s)	83, 128
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	3 cut(s)	102, 106, 133
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	5 cut(s)	84, 98, 115, 129, 164
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	2 cut(s)	70, 256
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	83, 128
Bso31I	GGTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	71
BspANI	GGCC	2 cut(s)	83, 128
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	55, 119, 160
BspPI	GGATC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	70
BsrFI	RCCGGY	2 cut(s)	83, 128
BssAI	RCCGGY	2 cut(s)	83, 128
BssECI	CCNNGG	2 cut(s)	162, 414
BssMI	GATC	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	74
BstMAI	GTCTC	2 cut(s)	70, 256
BstMBI	GATC	1 cut(s)	71
BstMCI	CGRYCG	3 cut(s)	102, 106, 133
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	4 cut(s)	96, 113, 162, 414
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	4 cut(s)	26, 29, 184, 214
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	83, 128
BtsI	GCAGTG	2 cut(s)	160, 285
BtsIMutI	CAGTG	2 cut(s)	160, 285
Cac8I	GCNNGC	1 cut(s)	276
Cfr10I	RCCGGY	2 cut(s)	83, 128
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	136
CviJI	RGCY	9 cut(s)	6, 20, 83, 128, 159, 197, 274, 307, 329
CviKI_1	RGCY	9 cut(s)	6, 20, 83, 128, 159, 197, 274, 307, 329
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	8
FaqI	GGGAC	1 cut(s)	248
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	4 cut(s)	15, 18, 198, 228
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	15, 18, 198, 228
FspBI	CTAG	2 cut(s)	194, 424
GluI	GCNGC	4 cut(s)	15, 18, 198, 228
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	83, 128
HapII	CCGG	5 cut(s)	84, 98, 115, 129, 164
HgaI	GACGC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	147, 252
HpaII	CCGG	5 cut(s)	84, 98, 115, 129, 164
Hpy166II	GTNNAC	2 cut(s)	169, 300
Hpy188I	TCNGA	2 cut(s)	50, 261
Hpy188III	TCNNGA	2 cut(s)	69, 209
Hpy8I	GTNNAC	2 cut(s)	169, 300
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	73, 370
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	91, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	2 cut(s)	11, 164
Lsp1109I	GCAGC	4 cut(s)	26, 29, 184, 214
MaeI	CTAG	2 cut(s)	194, 424
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	1 cut(s)	256
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	156
MspI	CCGG	5 cut(s)	84, 98, 115, 129, 164
MspR9I	CCNGG	4 cut(s)	98, 115, 164, 416
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	3 cut(s)	98, 115, 164
NdeII	GATC	1 cut(s)	71
NlaIV	GGNNCC	3 cut(s)	55, 119, 160
NmuCI	GTSAC	1 cut(s)	319
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	4 cut(s)	16, 19, 199, 229
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	3 cut(s)	55, 119, 160
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	4 cut(s)	15, 18, 198, 228
Sau3AI	GATC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	4 cut(s)	98, 115, 164, 416
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	8, 48, 174, 195, 199, 207, 276, 331, 340
SmlI	CTYRAG	2 cut(s)	67, 122
SmoI	CTYRAG	2 cut(s)	67, 122
Sse9I	AATT	1 cut(s)	92
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	2 cut(s)	194, 424
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	4 cut(s)	96, 113, 162, 414
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	186
TaqII	GACCGA	2 cut(s)	52, 92
TasI	AATT	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	252
TscAI	CASTG	2 cut(s)	160, 285
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	4 cut(s)	14, 17, 197, 227
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	160, 285
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	2 cut(s)	194, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.