Rorug02G0649100

Histone H2A

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
75819572 .. 75819838
267 bp
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UTR
Exon/CDS
Intron
Rorug02G0649100.1

Sequence Viewer

Length: 267 bp
ATGATTTTTGCTGTCTCAGACACAGAGAAGTTCTATACTGAAGTCCAGGAAATTATACTTGCTAGGTACAATAAAACTTTTGATTGGGCTTTGAAAGCAAAAATGATGGGAAAGAAAGCAATAGAAGCTGCTCGGGTCTTTGTTGAAGACACTGGACTTAGTGACTCTCTTACTGCTGAGGACTTTCTGGTTGAAAGAGAGGCAATGTTGCAGAAATTGTTTCCATCAAGCGAGCTGATGCCAGGTACCATTAGTATATGCAAATAG

Protein Analysis

88

Amino Acids

9.99

Weight (kDa)

4.9

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 2 cut(s) 68, 247
AgsI TTSAA 3 cut(s) 94, 146, 194
AjnI CCWGG 2 cut(s) 45, 241
AluBI AGCT 2 cut(s) 128, 235
AluI AGCT 2 cut(s) 128, 235
Alw26I GTCTC 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 128
Asp718I GGTACC 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 153
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 100, 232
BciT130I CCWGG 2 cut(s) 47, 243
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 47, 243
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 47, 243
BmsI GCATC 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 2 cut(s) 47, 243
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 30, 168
BseNI ACTGG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 115
BshNI GGYRCC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 132
BspCNI CTCAG 2 cut(s) 29, 169
BspLI GGNNCC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 47, 243
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 16, 158, 177
BstMAI GTCTC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 95, 125
BstNI CCWGG 2 cut(s) 47, 243
BstSCI CCNGG 2 cut(s) 45, 241
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 67, 246
CviJI RGCY 3 cut(s) 89, 128, 235
CviKI_1 RGCY 3 cut(s) 89, 128, 235
CviQI GTAC 2 cut(s) 67, 246
DdeI CTNAG 3 cut(s) 16, 158, 177
Eco57I CTGAAG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 45, 241
FaiI YATR 4 cut(s) 36, 56, 257, 259
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 129
HinfI GANTC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 211, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 125
HpyF3I CTNAG 3 cut(s) 16, 158, 177
KpnI GGTACC 1 cut(s) 249
LpnPI CCDG 6 cut(s) 32, 59, 138, 173, 228, 255
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 228
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 161
MboII GAAGA 1 cut(s) 158
MluCI AATT 2 cut(s) 51, 215
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 172, 193
MspR9I CCNGG 2 cut(s) 47, 243
MvaI CCWGG 2 cut(s) 47, 243
MwoI GCNNNNNNNGC 2 cut(s) 95, 125
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 45, 241
PspGI CCWGG 2 cut(s) 45, 241
PspN4I GGNNCC 1 cut(s) 247
RsaI GTAC 2 cut(s) 68, 247
RsaNI GTAC 2 cut(s) 67, 246
SatI GCNGC 1 cut(s) 129
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 47, 243
SetI ASST 4 cut(s) 68, 130, 237, 247
SfaNI GCATC 1 cut(s) 228
Sse9I AATT 2 cut(s) 51, 215
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 2 cut(s) 45, 241
TasI AATT 2 cut(s) 51, 215
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 161
TspRI CASTG 1 cut(s) 157
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.