Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Forward (+)

21555810 .. 21556466

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G250100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGTTCGCCGACTTCCAAGGGAGGCAGAGGCAAGCCTAAAGCTTCCAAATCCGTGTCCAGGTCTCACAAGGCTGGCCTCCAATTTCCAGTTGGCCGTATCGCTCGATTCCTCAAGTCCGGCAAGTACGCCGAGCGAGTCGGTGCTGGCGCTCCGGTATATCTCTCTGCCGTTCTCGAGTATCTCGCTGCTGAGGTACTTGAGCTTGCTGGCAATGCAGCCAGAGACAACAAGAAGAATCGAATTGTTCCAAGGCATATTCAGCTGGCTGTGCGTAACGACGAGGAGTTGAGCAAGCTTTTGGGGACTGTTACTATTGCTAATGGCGGTGTTTTGCCAAACATTCATCAGACTCTGTTGCCGAAGAAGATTGGTAGAGGGAAAGGAGACATTGGATCTGCCTCTCAAGAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

139

Amino Acids

14.64

Weight (kDa)

10.44

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	410
AfaI	GTAC	2 cut(s)	128, 198
AfiI	CCNNNNNNNGG	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	4 cut(s)	44, 205, 265, 298
AluI	AGCT	4 cut(s)	44, 205, 265, 298
Alw26I	GTCTC	3 cut(s)	69, 219, 381
AlwI	GGATC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	76, 94
ApeKI	GCWGC	2 cut(s)	188, 218
ApoI	RAATTY	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	175, 230
BceAI	ACGGC	2 cut(s)	81, 155
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	3 cut(s)	69, 219, 381
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	2 cut(s)	189, 219
BlsI	GCNGC	2 cut(s)	190, 220
Bme1390I	CCNGG	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	3 cut(s)	98, 221, 390
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	18, 251
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	2 cut(s)	18, 251
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	175, 230
BshFI	GGCC	2 cut(s)	78, 96
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	120, 155
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	3 cut(s)	69, 219, 381
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	78, 96
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	395
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	2 cut(s)	78, 96
BspCNI	CTCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	403
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	18, 251
BssMI	GATC	1 cut(s)	395
BssT1I	CCWWGG	2 cut(s)	18, 251
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	310
BstC8I	GCNNGC	7 cut(s)	35, 76, 148, 207, 211, 267, 296
BstDEI	CTNAG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	1 cut(s)	398
BstMAI	GTCTC	3 cut(s)	69, 219, 381
BstMBI	GATC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 262, 271
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	175, 230
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	78, 96
Cac8I	GCNNGC	7 cut(s)	35, 76, 148, 207, 211, 267, 296
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	127, 197
CviQI	GTAC	2 cut(s)	127, 197
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	18, 251
Eco31I	GGTCTC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	2 cut(s)	18, 251
ErhI	CCWWGG	2 cut(s)	18, 251
FaiI	YATR	2 cut(s)	160, 258
FaqI	GGGAC	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	189, 219
Fsp4HI	GCNGC	2 cut(s)	189, 219
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	2 cut(s)	189, 219
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	78, 96
HapII	CCGG	2 cut(s)	120, 155
HhaI	GCGC	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	2 cut(s)	42, 296
HinfI	GANTC	4 cut(s)	108, 138, 238, 352
HpaII	CCGG	2 cut(s)	120, 155
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	2 cut(s)	176, 407
Hpy99I	CGWCG	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 262, 271
HpyF3I	CTNAG	1 cut(s)	192
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	395
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	2 cut(s)	175, 230
MaeIII	GTNAC	2 cut(s)	275, 310
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	3 cut(s)	247, 376, 379
MflI	RGATCY	1 cut(s)	395
MluCI	AATT	3 cut(s)	83, 243, 410
MlyI	GAGTC	2 cut(s)	147, 346
MnlI	CCTC	8 cut(s)	17, 23, 89, 122, 187, 277, 371, 412
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	2 cut(s)	120, 155
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	3 cut(s)	215, 262, 271
NdeII	GATC	1 cut(s)	395
NmeAIII	GCCGAG	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	108, 238
PkrI	GCNGC	2 cut(s)	190, 220
PleI	GAGTC	2 cut(s)	146, 346
PpsI	GAGTC	2 cut(s)	146, 346
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PstNI	CAGNNNCTG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	2 cut(s)	128, 198
RsaNI	GTAC	2 cut(s)	127, 197
SatI	GCNGC	2 cut(s)	189, 219
Sau3AI	GATC	1 cut(s)	395
SchI	GAGTC	2 cut(s)	147, 346
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	6 cut(s)	46, 65, 198, 207, 267, 300
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	4 cut(s)	113, 176, 200, 405
SmoI	CTYRAG	4 cut(s)	113, 176, 200, 405
Sse9I	AATT	3 cut(s)	83, 243, 410
SsiI	CCGC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	2 cut(s)	18, 251
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	3 cut(s)	106, 177, 241
TasI	AATT	3 cut(s)	83, 243, 410
TfiI	GAWTC	2 cut(s)	108, 238
TseI	GCWGC	2 cut(s)	188, 218
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	43
XapI	RAATTY	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.