Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002003

Physical Location & Seq

Genomic Coordinates Forward (+)

35704494 .. 35706014

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1273900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGTTCGCCGACTTCTAAGGGCGGCAGAGGCAAGCCCAAGGCATCCAAGTCCGTCTCCCGATCTTCCAAGGCCGGCCTCCAGTTCCCCGTCGGCCGTATCGCTCGGTTTCTTAAGTCCGGCAAGTACGCCGAGCGTGTCGGCGCCGGTGCCCCCGTATACCTCTCCGCCGTCCTCGAGTATCTCGCTGCTGAGGTGCTTGAGCTCGCCGGAAACGCAGCCAGAGACAACAAGAAGAACCGAATTGTGCCGAGGCACATTCAGCTGGCTGTTCGAAACGACGAGGAGCTGAGCAAGCTTTTGGGATCTGTTACGATCGCAAACGGTGGCGTCTTGCCGAACATTCATCAGAATCTGCTGCCGAGCAAGGCTGGGAAGGGGAAAGGTGACATCGGATCTGCCTCACAAGAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

139

Amino Acids

14.48

Weight (kDa)

10.32

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	13 - 92	7.9e-15	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	95 - 128	3.4e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08880 AT1G54690
fragaria_vesca	FvH4_2g24430 FvH4_2g24440 FvH4_6g04950
malus_domestica	MD03G1273800.v1.1 MD03G1273900.v1.1 MD04G1212600.v1.1 MD11G1296200.v1.1 MD12G1227300.v1.1 MD17G1159100.v1.1
prunus_persica	Prupe.6G332900_v2.0.a1 Prupe.8G250000_v2.0.a1 Prupe.8G250100_v2.0.a1
pyrus_communis	pycom03g21800 pycom03g21810 pycom04g18860 pycom12g21210 pycom14g01910
rosa_chinensis	RchiOBHm_Chr3g0453441 RchiOBHm_Chr6g0292261 RchiOBHm_Chr6g0292281
rosa_laevigata	RLG00000012046 RLG00000012047 RLG00000025514
rosa_multiflora	Rmu_co8413311.1_g000001 Rmu_sc0002993.1_g000016 Rmu_sc0037544.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430410 Rroxscaffold_7G00175250 Rroxscaffold_7G00175270
rosa_rugosa	Rorug02G0649100 Rorug06G0225000 Rorug06G0225100
rosa_samantha	Rh3BG053300 Rh3CG052600 Rh3DG053400 Rh6AG338300 Rh6AG338500 Rh6CG352500 Rh6CG352700 Rh6DG338500
rosa_wichuraiana	Rw3G003990 Rw6G029440 Rw6G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	143, 149
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	2 cut(s)	24, 168
AclWI	GGATC	2 cut(s)	313, 403
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	410
AcyI	GRCGYC	2 cut(s)	144, 330
AfaI	GTAC	1 cut(s)	128
AflII	CTTAAG	1 cut(s)	113
AluBI	AGCT	4 cut(s)	205, 265, 289, 298
AluI	AGCT	4 cut(s)	205, 265, 289, 298
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	61, 219
AlwI	GGATC	2 cut(s)	313, 403
AlwNI	CAGNNNCTG	1 cut(s)	355
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	72, 76, 94
ApeKI	GCWGC	3 cut(s)	188, 218, 358
ApoI	RAATTY	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	398
AsuII	TTCGAA	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	2 cut(s)	143, 149
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	175, 230, 345
BceAI	ACGGC	2 cut(s)	81, 155
BcoDI	GTCTC	2 cut(s)	61, 219
BfoI	RGCGCY	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	113
BisI	GCNGC	4 cut(s)	25, 189, 219, 359
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	4 cut(s)	26, 190, 220, 360
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	145, 151
BmsI	GCATC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	290
Bpu14I	TTCGAA	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	221
BsaHI	GRCGYC	2 cut(s)	144, 330
BsaJI	CCNNGG	3 cut(s)	39, 69, 251
Bse118I	RCCGGY	2 cut(s)	74, 146
Bse1I	ACTGG	1 cut(s)	82
BseDI	CCNNGG	3 cut(s)	39, 69, 251
BseGI	GGATG	1 cut(s)	44
BseMII	CTCAG	2 cut(s)	183, 281
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	175, 230, 345
BseYI	CCCAGC	1 cut(s)	371
Bsh1285I	CGRYCG	2 cut(s)	97, 318
BshFI	GGCC	3 cut(s)	74, 78, 96
BshNI	GGYRCC	2 cut(s)	143, 149
BsiEI	CGRYCG	2 cut(s)	97, 318
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	75, 120, 147, 210
BsmAI	GTCTC	2 cut(s)	61, 219
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	3 cut(s)	74, 78, 96
BsoBI	CYCGRG	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	154, 207
Bsp143I	GATC	4 cut(s)	62, 305, 315, 395
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	2 cut(s)	24, 168
BspANI	GGCC	3 cut(s)	74, 78, 96
BspCNI	CTCAG	2 cut(s)	184, 282
BspLI	GGNNCC	2 cut(s)	145, 151
BspPI	GGATC	2 cut(s)	313, 403
BspT104I	TTCGAA	1 cut(s)	274
BspT107I	GGYRCC	2 cut(s)	143, 149
BspTI	CTTAAG	1 cut(s)	113
BsrFI	RCCGGY	2 cut(s)	74, 146
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	2 cut(s)	74, 146
BssECI	CCNNGG	3 cut(s)	39, 69, 251
BssMI	GATC	4 cut(s)	62, 305, 315, 395
BssNAI	GTATAC	1 cut(s)	160
BssNI	GRCGYC	2 cut(s)	144, 330
BssT1I	CCWWGG	2 cut(s)	39, 69
Bst1107I	GTATAC	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	326
BstACI	GRCGYC	2 cut(s)	144, 330
BstAFI	CTTAAG	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	274
BstC8I	GCNNGC	5 cut(s)	35, 76, 207, 267, 296
BstDEI	CTNAG	3 cut(s)	18, 192, 290
BstF5I	GGATG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	4 cut(s)	65, 308, 318, 398
BstMAI	GTCTC	2 cut(s)	61, 219
BstMBI	GATC	4 cut(s)	62, 305, 315, 395
BstMCI	CGRYCG	2 cut(s)	97, 318
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 215, 262, 295
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	3 cut(s)	175, 230, 345
BstX2I	RGATCY	2 cut(s)	305, 395
BstYI	RGATCY	2 cut(s)	305, 395
BstZ17I	GTATAC	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	74, 78, 96
BtsCI	GGATG	1 cut(s)	44
Cac8I	GCNNGC	5 cut(s)	35, 76, 207, 267, 296
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	2 cut(s)	74, 146
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	127
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	3 cut(s)	18, 192, 290
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	4 cut(s)	64, 307, 317, 397
DpnII	GATC	4 cut(s)	62, 305, 315, 395
EaeI	YGGCCR	1 cut(s)	94
EagI	CGGCCG	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	205
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	39, 69
Eco24I	GRGCYC	1 cut(s)	207
Eco52I	CGGCCG	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	39, 69
EcoT38I	GRGCYC	1 cut(s)	207
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	39, 69
Esp3I	CGTCTC	1 cut(s)	61
FaiI	YATR	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	25, 189, 219, 359
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	1 cut(s)	207
FseI	GGCCGGCC	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	25, 189, 219, 359
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	4 cut(s)	25, 189, 219, 359
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	3 cut(s)	74, 78, 96
HapII	CCGG	4 cut(s)	75, 120, 147, 210
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	2 cut(s)	144, 330
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	4 cut(s)	75, 120, 147, 210
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	351, 395
Hpy188III	TCNNGA	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	2 cut(s)	95, 284
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 215, 262, 295
HpyF3I	CTNAG	3 cut(s)	18, 192, 290
Hsp92I	GRCGYC	2 cut(s)	144, 330
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	62, 305, 315, 395
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	8 cut(s)	88, 95, 133, 160, 223, 235, 251, 357
Lsp1109I	GCAGC	3 cut(s)	175, 230, 345
LweI	GCATC	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	310, 386
MalI	GATC	4 cut(s)	64, 307, 317, 397
MboI	GATC	4 cut(s)	62, 305, 315, 395
MboII	GAAGA	2 cut(s)	57, 247
MflI	RGATCY	2 cut(s)	305, 395
MhlI	GDGCHC	2 cut(s)	154, 207
MluCI	AATT	2 cut(s)	243, 410
Mly113I	GGCGCC	1 cut(s)	144
MnlI	CCTC	8 cut(s)	23, 89, 173, 185, 187, 246, 277, 412
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	265
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	4 cut(s)	75, 120, 147, 210
MwoI	GCNNNNNNNGC	4 cut(s)	30, 215, 262, 295
NaeI	GCCGGC	1 cut(s)	76
NarI	GGCGCC	1 cut(s)	144
NdeII	GATC	4 cut(s)	62, 305, 315, 395
NgoMIV	GCCGGC	1 cut(s)	74
NlaIV	GGNNCC	2 cut(s)	145, 151
NmeAIII	GCCGAG	3 cut(s)	157, 276, 387
NmuCI	GTSAC	1 cut(s)	386
NspV	TTCGAA	1 cut(s)	274
PaeR7I	CTCGAG	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	4 cut(s)	26, 190, 220, 360
Ple19I	CGATCG	1 cut(s)	318
PluTI	GGCGCC	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	145, 151
PspXI	VCTCGAGB	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	305, 395
PvuI	CGATCG	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	265
RigI	GGCCGGCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	4 cut(s)	25, 189, 219, 359
Sau3AI	GATC	4 cut(s)	62, 305, 315, 395
SduI	GDGCHC	2 cut(s)	154, 207
SetI	ASST	7 cut(s)	165, 198, 207, 267, 291, 300, 388
SfaNI	GCATC	1 cut(s)	53
SfoI	GGCGCC	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	176
SfuI	TTCGAA	1 cut(s)	274
SgrAI	CRCCGGYG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	3 cut(s)	113, 176, 200
SmoI	CTYRAG	3 cut(s)	113, 176, 200
Sse9I	AATT	2 cut(s)	243, 410
SsiI	CCGC	2 cut(s)	24, 168
SspDI	GGCGCC	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	207
StyI	CCWWGG	2 cut(s)	39, 69
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	177, 274
TasI	AATT	2 cut(s)	243, 410
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	3 cut(s)	188, 218, 358
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	43
Vha464I	CTTAAG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	410
XhoI	CTCGAG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.