transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G12860 AT1G12860 AT1G12860 AT3G26744 AT3G26744 AT3G26744 AT3G26744 AT3G26744 |
| fragaria_vesca | FvH4_5g09300 FvH4_5g09300 |
| malus_domestica | MD06G1132200.v1.1 MD09G1003800.v1.1 MD14G1148600.v1.1 MD17G1007400.v1.1 |
| prunus_persica | Prupe.3G312800_v2.0.a1 Prupe.3G312800_v2.0.a1 Prupe.5G143200_v2.0.a1 |
| pyrus_communis | pycom06g12380 pycom111g00280 pycom14g12340 pycom17g00300 |
| rosa_chinensis | RchiOBHm_Chr2g0176421 RchiOBHm_Chr7g0188921 |
| rosa_laevigata | RLG00000004651 RLG00000022412 |
| rosa_multiflora | Rmu_co8326225.1_g000001 Rmu_co8487291.1_g000001 Rmu_sc0009140.1_g000010 Rmu_sc0011904.1_g000015 Rmu_ssc0000113.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00076450 Rroxscaffold_3G00265940 |
| rosa_rugosa | Rorug02G0594200 Rorug02G0594200 Rorug06G0494600 |
| rosa_samantha | Rh2AG672700 Rh2BG684200 Rh2CG647000 Rh2DG697800 Rh7AG099500 Rh7BG101600 Rh7CG102900 Rh7DG101300 |
| rosa_wichuraiana | Rw2G055180 Rw7G008570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1322 |
| AccI | GTMKAC | 1 cut(s) | 1156 |
| AccII | CGCG | 1 cut(s) | 1263 |
| AccIII | TCCGGA | 2 cut(s) | 43, 490 |
| AciI | CCGC | 2 cut(s) | 1220, 1261 |
| AclWI | GGATC | 1 cut(s) | 514 |
| AcsI | RAATTY | 1 cut(s) | 445 |
| AcuI | CTGAAG | 2 cut(s) | 127, 182 |
| AfaI | GTAC | 2 cut(s) | 471, 709 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1042 |
| AflIII | ACRYGT | 2 cut(s) | 1140, 1290 |
| AgsI | TTSAA | 7 cut(s) | 103, 151, 736, 971, 993, 1214, 1237 |
| AhlI | ACTAGT | 1 cut(s) | 704 |
| AjiI | CACGTC | 1 cut(s) | 1291 |
| AjnI | CCWGG | 1 cut(s) | 1159 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1194, 1226 |
| Alw21I | GWGCWC | 1 cut(s) | 629 |
| AlwI | GGATC | 1 cut(s) | 514 |
| Ama87I | CYCGRG | 1 cut(s) | 628 |
| Aor13HI | TCCGGA | 2 cut(s) | 43, 490 |
| AoxI | GGCC | 1 cut(s) | 1084 |
| ApeKI | GCWGC | 4 cut(s) | 65, 260, 586, 611 |
| ApoI | RAATTY | 1 cut(s) | 445 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 368, 400 |
| AspLEI | GCGC | 1 cut(s) | 1265 |
| AsuHPI | GGTGA | 3 cut(s) | 47, 71, 1234 |
| AvaI | CYCGRG | 1 cut(s) | 628 |
| BanII | GRGCYC | 1 cut(s) | 629 |
| BbsI | GAAGAC | 2 cut(s) | 99, 1287 |
| Bbv12I | GWGCWC | 1 cut(s) | 629 |
| BbvI | GCAGC | 4 cut(s) | 52, 247, 598, 598 |
| BccI | CCATC | 2 cut(s) | 362, 1066 |
| BceAI | ACGGC | 1 cut(s) | 43 |
| BciT130I | CCWGG | 1 cut(s) | 1161 |
| BcuI | ACTAGT | 1 cut(s) | 704 |
| BfaI | CTAG | 1 cut(s) | 705 |
| BfuAI | ACCTGC | 1 cut(s) | 1322 |
| BisI | GCNGC | 4 cut(s) | 66, 261, 587, 612 |
| BlpI | GCTNAGC | 1 cut(s) | 1266 |
| BlsI | GCNGC | 4 cut(s) | 67, 262, 588, 613 |
| Bme1390I | CCNGG | 1 cut(s) | 1161 |
| BmeT110I | CYCGRG | 1 cut(s) | 628 |
| BmgBI | CACGTC | 1 cut(s) | 1291 |
| BmiI | GGNNCC | 1 cut(s) | 31 |
| BmrFI | CCNGG | 1 cut(s) | 1161 |
| BmsI | GCATC | 3 cut(s) | 901, 905, 1009 |
| BpiI | GAAGAC | 2 cut(s) | 99, 1287 |
| Bpu10I | CCTNAGC | 1 cut(s) | 502 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1266 |
| Bsa29I | ATCGAT | 2 cut(s) | 206, 720 |
| BsaJI | CCNNGG | 1 cut(s) | 415 |
| BsaWI | WCCGGW | 5 cut(s) | 32, 43, 472, 490, 710 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1000, 1030 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1042 |
| Bse1I | ACTGG | 2 cut(s) | 101, 457 |
| Bse3DI | GCAATG | 2 cut(s) | 621, 1277 |
| BseAI | TCCGGA | 2 cut(s) | 43, 490 |
| BseBI | CCWGG | 1 cut(s) | 1161 |
| BseCI | ATCGAT | 2 cut(s) | 206, 720 |
| BseDI | CCNNGG | 1 cut(s) | 415 |
| BseGI | GGATG | 4 cut(s) | 241, 1000, 1213, 1258 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1042 |
| BseMI | GCAATG | 2 cut(s) | 621, 1277 |
| BseMII | CTCAG | 6 cut(s) | 189, 480, 516, 642, 804, 1257 |
| BseNI | ACTGG | 2 cut(s) | 101, 457 |
| BseXI | GCAGC | 4 cut(s) | 52, 247, 598, 598 |
| Bsh1236I | CGCG | 1 cut(s) | 1263 |
| BshFI | GGCC | 1 cut(s) | 1086 |
| BshVI | ATCGAT | 2 cut(s) | 206, 720 |
| BsiHKAI | GWGCWC | 1 cut(s) | 629 |
| BsiHKCI | CYCGRG | 1 cut(s) | 628 |
| BsiSI | CCGG | 5 cut(s) | 33, 44, 473, 491, 711 |
| BslFI | GGGAC | 1 cut(s) | 332 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1042 |
| BsmFI | GGGAC | 1 cut(s) | 332 |
| BsmI | GAATGC | 1 cut(s) | 795 |
| BsnI | GGCC | 1 cut(s) | 1086 |
| BsoBI | CYCGRG | 1 cut(s) | 628 |
| Bsp1286I | GDGCHC | 1 cut(s) | 629 |
| Bsp13I | TCCGGA | 2 cut(s) | 43, 490 |
| Bsp143I | GATC | 4 cut(s) | 506, 860, 876, 952 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1266 |
| Bsp19I | CCATGG | 1 cut(s) | 415 |
| BspACI | CCGC | 2 cut(s) | 1220, 1261 |
| BspANI | GGCC | 1 cut(s) | 1086 |
| BspCNI | CTCAG | 6 cut(s) | 188, 479, 515, 643, 805, 1258 |
| BspDI | ATCGAT | 2 cut(s) | 206, 720 |
| BspEI | TCCGGA | 2 cut(s) | 43, 490 |
| BspFNI | CGCG | 1 cut(s) | 1263 |
| BspLI | GGNNCC | 1 cut(s) | 31 |
| BspMI | ACCTGC | 1 cut(s) | 1322 |
| BspPI | GGATC | 1 cut(s) | 514 |
| BsrDI | GCAATG | 2 cut(s) | 621, 1277 |
| BsrI | ACTGG | 2 cut(s) | 101, 457 |
| BssECI | CCNNGG | 1 cut(s) | 415 |
| BssMI | GATC | 4 cut(s) | 506, 860, 876, 952 |
| BssT1I | CCWWGG | 1 cut(s) | 415 |
| Bst2UI | CCWGG | 1 cut(s) | 1161 |
| Bst4CI | ACNGT | 5 cut(s) | 14, 59, 303, 558, 1037 |
| Bst6I | CTCTTC | 2 cut(s) | 342, 1041 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 642 |
| BstC8I | GCNNGC | 3 cut(s) | 584, 795, 998 |
| BstDSI | CCRYGG | 1 cut(s) | 415 |
| BstF5I | GGATG | 4 cut(s) | 241, 1000, 1213, 1258 |
| BstFNI | CGCG | 1 cut(s) | 1263 |
| BstHHI | GCGC | 1 cut(s) | 1265 |
| BstKTI | GATC | 4 cut(s) | 509, 863, 879, 955 |
| BstMBI | GATC | 4 cut(s) | 506, 860, 876, 952 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 320, 633, 642, 853, 1337 |
| BstNI | CCWGG | 1 cut(s) | 1161 |
| BstNSI | RCATGY | 2 cut(s) | 856, 1144 |
| BstSCI | CCNGG | 1 cut(s) | 1159 |
| BstUI | CGCG | 1 cut(s) | 1263 |
| BstV1I | GCAGC | 4 cut(s) | 52, 247, 598, 598 |
| BstV2I | GAAGAC | 2 cut(s) | 99, 1287 |
| Bsu15I | ATCGAT | 2 cut(s) | 206, 720 |
| BsuRI | GGCC | 1 cut(s) | 1086 |
| BsuTUI | ATCGAT | 2 cut(s) | 206, 720 |
| BtgI | CCRYGG | 1 cut(s) | 415 |
| BtrI | CACGTC | 1 cut(s) | 1291 |
| BtsCI | GGATG | 4 cut(s) | 241, 1000, 1213, 1258 |
| BtsI | GCAGTG | 2 cut(s) | 1134, 1320 |
| BtsIMutI | CAGTG | 3 cut(s) | 450, 1134, 1320 |
| BveI | ACCTGC | 1 cut(s) | 1322 |
| Cac8I | GCNNGC | 3 cut(s) | 584, 795, 998 |
| CfoI | GCGC | 1 cut(s) | 1265 |
| ClaI | ATCGAT | 2 cut(s) | 206, 720 |
| CseI | GACGC | 3 cut(s) | 57, 266, 608 |
| CsiI | ACCWGGT | 1 cut(s) | 1159 |
| Csp6I | GTAC | 2 cut(s) | 470, 708 |
| CviAII | CATG | 6 cut(s) | 416, 510, 853, 1141, 1180, 1286 |
| CviQI | GTAC | 2 cut(s) | 470, 708 |
| DpnI | GATC | 4 cut(s) | 508, 862, 878, 954 |
| DpnII | GATC | 4 cut(s) | 506, 860, 876, 952 |
| DraI | TTTAAA | 2 cut(s) | 168, 552 |
| Eam1104I | CTCTTC | 2 cut(s) | 342, 1041 |
| EarI | CTCTTC | 2 cut(s) | 342, 1041 |
| Ecl136II | GAGCTC | 1 cut(s) | 627 |
| Eco130I | CCWWGG | 1 cut(s) | 415 |
| Eco24I | GRGCYC | 1 cut(s) | 629 |
| Eco32I | GATATC | 1 cut(s) | 724 |
| Eco53kI | GAGCTC | 1 cut(s) | 627 |
| Eco57I | CTGAAG | 2 cut(s) | 127, 182 |
| Eco88I | CYCGRG | 1 cut(s) | 628 |
| EcoICRI | GAGCTC | 1 cut(s) | 627 |
| EcoRII | CCWGG | 1 cut(s) | 1159 |
| EcoRV | GATATC | 1 cut(s) | 724 |
| EcoT14I | CCWWGG | 1 cut(s) | 415 |
| EcoT38I | GRGCYC | 1 cut(s) | 629 |
| ErhI | CCWWGG | 1 cut(s) | 415 |
| FaeI | CATG | 6 cut(s) | 419, 513, 856, 1144, 1183, 1289 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1302, 1334 |
| FaqI | GGGAC | 1 cut(s) | 332 |
| FatI | CATG | 6 cut(s) | 415, 509, 852, 1140, 1179, 1285 |
| FblI | GTMKAC | 1 cut(s) | 1156 |
| Fnu4HI | GCNGC | 4 cut(s) | 66, 261, 587, 612 |
| FokI | GGATG | 4 cut(s) | 228, 987, 1220, 1265 |
| FriOI | GRGCYC | 1 cut(s) | 629 |
| Fsp4HI | GCNGC | 4 cut(s) | 66, 261, 587, 612 |
| FspBI | CTAG | 1 cut(s) | 705 |
| GlaI | GCGC | 1 cut(s) | 1264 |
| GluI | GCNGC | 4 cut(s) | 66, 261, 587, 612 |
| HaeIII | GGCC | 1 cut(s) | 1086 |
| HapII | CCGG | 5 cut(s) | 33, 44, 473, 491, 711 |
| HgaI | GACGC | 3 cut(s) | 57, 266, 608 |
| HhaI | GCGC | 1 cut(s) | 1265 |
| Hin1II | CATG | 6 cut(s) | 419, 513, 856, 1144, 1183, 1289 |
| Hin6I | GCGC | 1 cut(s) | 1263 |
| HinP1I | GCGC | 1 cut(s) | 1263 |
| HincII | GTYRAC | 1 cut(s) | 1008 |
| HindII | GTYRAC | 1 cut(s) | 1008 |
| HindIII | AAGCTT | 3 cut(s) | 321, 833, 994 |
| HpaI | GTTAAC | 1 cut(s) | 1008 |
| HpaII | CCGG | 5 cut(s) | 33, 44, 473, 491, 711 |
| HphI | GGTGA | 3 cut(s) | 47, 71, 1234 |
| Hpy166II | GTNNAC | 4 cut(s) | 1008, 1132, 1151, 1157 |
| Hpy188I | TCNGA | 9 cut(s) | 80, 146, 178, 435, 603, 624, 652, 664, 748 |
| Hpy188III | TCNNGA | 5 cut(s) | 44, 491, 504, 729, 1277 |
| Hpy8I | GTNNAC | 4 cut(s) | 1008, 1132, 1151, 1157 |
| Hpy99I | CGWCG | 2 cut(s) | 14, 260 |
| HpyAV | CCTTC | 2 cut(s) | 819, 1112 |
| HpyCH4III | ACNGT | 5 cut(s) | 14, 59, 303, 558, 1037 |
| HpyCH4IV | ACGT | 3 cut(s) | 345, 1153, 1290 |
| HpyCH4V | TGCA | 4 cut(s) | 614, 645, 797, 1000 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 320, 633, 642, 853, 1337 |
| HpySE526I | ACGT | 3 cut(s) | 345, 1153, 1290 |
| Hsp92II | CATG | 6 cut(s) | 419, 513, 856, 1144, 1183, 1289 |
| HspAI | GCGC | 1 cut(s) | 1263 |
| Kpn2I | TCCGGA | 2 cut(s) | 43, 490 |
| KspAI | GTTAAC | 1 cut(s) | 1008 |
| Kzo9I | GATC | 4 cut(s) | 506, 860, 876, 952 |
| LmnI | GCTCC | 2 cut(s) | 35, 493 |
| Lsp1109I | GCAGC | 4 cut(s) | 52, 247, 598, 598 |
| LweI | GCATC | 3 cut(s) | 901, 905, 1009 |
| MabI | ACCWGGT | 1 cut(s) | 1159 |
| MaeI | CTAG | 1 cut(s) | 705 |
| MaeII | ACGT | 3 cut(s) | 345, 1153, 1290 |
| MaeIII | GTNAC | 3 cut(s) | 558, 1293, 1334 |
| MalI | GATC | 4 cut(s) | 508, 862, 878, 954 |
| MboI | GATC | 4 cut(s) | 506, 860, 876, 952 |
| MhlI | GDGCHC | 1 cut(s) | 629 |
| MluCI | AATT | 4 cut(s) | 410, 445, 646, 736 |
| MlyI | GAGTC | 3 cut(s) | 383, 529, 1009 |
| MnlI | CCTC | 6 cut(s) | 184, 534, 663, 935, 1075, 1096 |
| MroI | TCCGGA | 2 cut(s) | 43, 490 |
| MseI | TTAA | 8 cut(s) | 51, 167, 458, 551, 837, 1007, 1041, 1112 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1139 |
| MspI | CCGG | 5 cut(s) | 33, 44, 473, 491, 711 |
| MspR9I | CCNGG | 1 cut(s) | 1161 |
| Mva1269I | GAATGC | 1 cut(s) | 795 |
| MvaI | CCWGG | 1 cut(s) | 1161 |
| MvnI | CGCG | 1 cut(s) | 1263 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 320, 633, 642, 853, 1337 |
| NcoI | CCATGG | 1 cut(s) | 415 |
| NdeII | GATC | 4 cut(s) | 506, 860, 876, 952 |
| NlaIII | CATG | 6 cut(s) | 419, 513, 856, 1144, 1183, 1289 |
| NlaIV | GGNNCC | 1 cut(s) | 31 |
| NspI | RCATGY | 2 cut(s) | 856, 1144 |
| PaeR7I | CTCGAG | 1 cut(s) | 628 |
| PciI | ACATGT | 1 cut(s) | 1140 |
| PctI | GAATGC | 1 cut(s) | 795 |
| PfeI | GAWTC | 9 cut(s) | 38, 147, 181, 212, 714, 743, 802, 945, 971 |
| PflFI | GACNNNGTC | 1 cut(s) | 1161 |
| PkrI | GCNGC | 4 cut(s) | 67, 262, 588, 613 |
| PleI | GAGTC | 3 cut(s) | 383, 528, 1009 |
| PpsI | GAGTC | 3 cut(s) | 383, 528, 1009 |
| PscI | ACATGT | 1 cut(s) | 1140 |
| Psp124BI | GAGCTC | 1 cut(s) | 629 |
| Psp6I | CCWGG | 1 cut(s) | 1159 |
| PspGI | CCWGG | 1 cut(s) | 1159 |
| PspN4I | GGNNCC | 1 cut(s) | 31 |
| PspXI | VCTCGAGB | 1 cut(s) | 628 |
| PsyI | GACNNNGTC | 1 cut(s) | 1161 |
| RsaI | GTAC | 2 cut(s) | 471, 709 |
| RsaNI | GTAC | 2 cut(s) | 470, 708 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1139 |
| SacI | GAGCTC | 1 cut(s) | 629 |
| SaqAI | TTAA | 8 cut(s) | 51, 167, 458, 551, 837, 1007, 1041, 1112 |
| SatI | GCNGC | 4 cut(s) | 66, 261, 587, 612 |
| Sau3AI | GATC | 4 cut(s) | 506, 860, 876, 952 |
| SchI | GAGTC | 3 cut(s) | 383, 529, 1009 |
| ScrFI | CCNGG | 1 cut(s) | 1161 |
| SduI | GDGCHC | 1 cut(s) | 629 |
| SexAI | ACCWGGT | 1 cut(s) | 1159 |
| SfaNI | GCATC | 3 cut(s) | 901, 905, 1009 |
| Sfr274I | CTCGAG | 1 cut(s) | 628 |
| SlaI | CTCGAG | 1 cut(s) | 628 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1139 |
| SmlI | CTYRAG | 1 cut(s) | 628 |
| SmoI | CTYRAG | 1 cut(s) | 628 |
| SpeI | ACTAGT | 1 cut(s) | 704 |
| Sse9I | AATT | 4 cut(s) | 410, 445, 646, 736 |
| SsiI | CCGC | 2 cut(s) | 1220, 1261 |
| SspMI | CTAG | 1 cut(s) | 705 |
| SstI | GAGCTC | 1 cut(s) | 629 |
| StyD4I | CCNGG | 1 cut(s) | 1159 |
| StyI | CCWWGG | 1 cut(s) | 415 |
| TaaI | ACNGT | 5 cut(s) | 14, 59, 303, 558, 1037 |
| TaiI | ACGT | 3 cut(s) | 348, 1156, 1293 |
| TaqI | TCGA | 7 cut(s) | 206, 255, 372, 440, 629, 677, 720 |
| TasI | AATT | 4 cut(s) | 410, 445, 646, 736 |
| TfiI | GAWTC | 9 cut(s) | 38, 147, 181, 212, 714, 743, 802, 945, 971 |
| Tru1I | TTAA | 8 cut(s) | 51, 167, 458, 551, 837, 1007, 1041, 1112 |
| Tru9I | TTAA | 8 cut(s) | 51, 167, 458, 551, 837, 1007, 1041, 1112 |
| TscAI | CASTG | 3 cut(s) | 457, 1134, 1320 |
| TseI | GCWGC | 4 cut(s) | 65, 260, 586, 611 |
| TspDTI | ATGAA | 4 cut(s) | 17, 105, 458, 564 |
| TspGWI | ACGGA | 2 cut(s) | 222, 993 |
| TspRI | CASTG | 3 cut(s) | 457, 1134, 1320 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1161 |
| XapI | RAATTY | 1 cut(s) | 445 |
| XceI | RCATGY | 2 cut(s) | 856, 1144 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 93, 1186 |
| XhoI | CTCGAG | 1 cut(s) | 628 |
| XmiI | GTMKAC | 1 cut(s) | 1156 |
| XspI | CTAG | 1 cut(s) | 705 |