AT1G12860

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4384304 .. 4386651
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12860.2

Sequence Viewer

Length: 1353 bp
ATGAACAGCGACGGTGTTTGGCTTGACGGCTCCGGTGAATCTCCGGAAGTTAATAACGGTGAAGCTGCGTCTTGGGTCAGAAACCCAGATGAAGACTGGTTCAATAACCCACCACCACCACAACACACTAATCAAAACGACTTCAGATTCAATGGTGGCTTTCCTTTAAACCCCTCAGAGAATCTGCTTCTTCTTCTTCAGCAATCGATTGATTCTTCTTCTTCTTCTTCTCCGTTATTACATCCTTTCACACTCGACGCTGCTTCACAGCAACAACAACAACAACAACAACAACAGGAACAGTCTTTCTTAGCTACGAAAGCTTGTATAGTTTCTCTTCTCAACGTCCCAACCATCAATAACAACACTTTCGATGACTTCGGCTTTGACTCTGGTTTCTTAGGACAACAATTCCATGGAAATCATCAATCTCCGAACTCGATGAATTTCACTGGCTTAAACCACTCAGTACCGGATTTTCTTCCAGCTCCGGAAAACAGCTCAGGATCATGTGGATTGAGTCCTCTGTTCTCAAACAGAGCAAAGGTTTTAAAACCGTTACAGGTAATGGCTTCATCTGGCTCGCAGCCAACTCTGTTTCAGAAACGAGCTGCAATGCGTCAGAGCTCGAGTAGCAAAATGTGCAATTCTGAGAGTTCTTCTGAAATGAGGAAATCGAGCTACGAGAGAGAGATTGACGATACTAGTACCGGAATCATCGATATCTCTGGATTGAATTACGAATCTGATGACCATAATACTAATAACAACAAAGGTAAGAAGAAAGGAATGCCTGCAAAGAATCTTATGGCTGAGAGAAGAAGAAGGAAGAAGCTTAATGATAGGCTTTACATGCTTAGATCAGTTGTTCCCAAGATCAGCAAAATGGATAGAGCATCAATACTTGGAGATGCTATTGATTACCTCAAAGAGCTTTTACAAAGAATCAACGATCTTCACACCGAACTTGAATCTACTCCACCGAGTTCTTCAAGCTTGCATCCGTTAACACCGACTCCACAAACGCTGTCTTACCGTGTTAAGGAAGAGTTGTGTCCATCTTCCTCCTTGCCAAGTCCTAAAGGCCAACAACCAAGAGTTGAGGTTAGATTAAGAGAAGGAAAGGCAGTGAACATACACATGTTCTGTGGACGTAGACCAGGTCTTTTACTTTCCACCATGAGAGCTTTGGATAACTTAGGATTGGATGTTCAACAAGCGGTGATTAGCTGTTTCAATGGTTTTGCTTTGGATGTTTTCCGCGCTGAGCAATGTCAAGAAGACCATGACGTGTTACCTGAACAAATCAAAGCAGTGCTTTTAGATACAGCAGGTTACGCTGGTTTGGTTTGA

Protein Analysis

450

Amino Acids

49.8

Weight (kDa)

5.85

Isoelectric Point (pI)

63.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 269 - 318 5.9e-08 Transcription factor SAC51 bHLH domain
HLH PF00010 270 - 312 1.5e-09 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 367 - 420 7e-11 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1322
AccI GTMKAC 1 cut(s) 1156
AccII CGCG 1 cut(s) 1263
AccIII TCCGGA 2 cut(s) 43, 490
AciI CCGC 2 cut(s) 1220, 1261
AclWI GGATC 1 cut(s) 514
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 2 cut(s) 127, 182
AfaI GTAC 2 cut(s) 471, 709
AfiI CCNNNNNNNGG 1 cut(s) 1042
AflIII ACRYGT 2 cut(s) 1140, 1290
AgsI TTSAA 7 cut(s) 103, 151, 736, 971, 993, 1214, 1237
AhlI ACTAGT 1 cut(s) 704
AjiI CACGTC 1 cut(s) 1291
AjnI CCWGG 1 cut(s) 1159
AloI GAACNNNNNNTCC 2 cut(s) 1194, 1226
Alw21I GWGCWC 1 cut(s) 629
AlwI GGATC 1 cut(s) 514
Ama87I CYCGRG 1 cut(s) 628
Aor13HI TCCGGA 2 cut(s) 43, 490
AoxI GGCC 1 cut(s) 1084
ApeKI GCWGC 4 cut(s) 65, 260, 586, 611
ApoI RAATTY 1 cut(s) 445
ArsI GACNNNNNNTTYG 2 cut(s) 368, 400
AspLEI GCGC 1 cut(s) 1265
AsuHPI GGTGA 3 cut(s) 47, 71, 1234
AvaI CYCGRG 1 cut(s) 628
BanII GRGCYC 1 cut(s) 629
BbsI GAAGAC 2 cut(s) 99, 1287
Bbv12I GWGCWC 1 cut(s) 629
BbvI GCAGC 4 cut(s) 52, 247, 598, 598
BccI CCATC 2 cut(s) 362, 1066
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 1161
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 1 cut(s) 705
BfuAI ACCTGC 1 cut(s) 1322
BisI GCNGC 4 cut(s) 66, 261, 587, 612
BlpI GCTNAGC 1 cut(s) 1266
BlsI GCNGC 4 cut(s) 67, 262, 588, 613
Bme1390I CCNGG 1 cut(s) 1161
BmeT110I CYCGRG 1 cut(s) 628
BmgBI CACGTC 1 cut(s) 1291
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 1161
BmsI GCATC 3 cut(s) 901, 905, 1009
BpiI GAAGAC 2 cut(s) 99, 1287
Bpu10I CCTNAGC 1 cut(s) 502
Bpu1102I GCTNAGC 1 cut(s) 1266
Bsa29I ATCGAT 2 cut(s) 206, 720
BsaJI CCNNGG 1 cut(s) 415
BsaWI WCCGGW 5 cut(s) 32, 43, 472, 490, 710
BsaXI ACNNNNNCTCC 2 cut(s) 1000, 1030
Bsc4I CCNNNNNNNGG 1 cut(s) 1042
Bse1I ACTGG 2 cut(s) 101, 457
Bse3DI GCAATG 2 cut(s) 621, 1277
BseAI TCCGGA 2 cut(s) 43, 490
BseBI CCWGG 1 cut(s) 1161
BseCI ATCGAT 2 cut(s) 206, 720
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 4 cut(s) 241, 1000, 1213, 1258
BseLI CCNNNNNNNGG 1 cut(s) 1042
BseMI GCAATG 2 cut(s) 621, 1277
BseMII CTCAG 6 cut(s) 189, 480, 516, 642, 804, 1257
BseNI ACTGG 2 cut(s) 101, 457
BseXI GCAGC 4 cut(s) 52, 247, 598, 598
Bsh1236I CGCG 1 cut(s) 1263
BshFI GGCC 1 cut(s) 1086
BshVI ATCGAT 2 cut(s) 206, 720
BsiHKAI GWGCWC 1 cut(s) 629
BsiHKCI CYCGRG 1 cut(s) 628
BsiSI CCGG 5 cut(s) 33, 44, 473, 491, 711
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 1042
BsmFI GGGAC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 795
BsnI GGCC 1 cut(s) 1086
BsoBI CYCGRG 1 cut(s) 628
Bsp1286I GDGCHC 1 cut(s) 629
Bsp13I TCCGGA 2 cut(s) 43, 490
Bsp143I GATC 4 cut(s) 506, 860, 876, 952
Bsp1720I GCTNAGC 1 cut(s) 1266
Bsp19I CCATGG 1 cut(s) 415
BspACI CCGC 2 cut(s) 1220, 1261
BspANI GGCC 1 cut(s) 1086
BspCNI CTCAG 6 cut(s) 188, 479, 515, 643, 805, 1258
BspDI ATCGAT 2 cut(s) 206, 720
BspEI TCCGGA 2 cut(s) 43, 490
BspFNI CGCG 1 cut(s) 1263
BspLI GGNNCC 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 1322
BspPI GGATC 1 cut(s) 514
BsrDI GCAATG 2 cut(s) 621, 1277
BsrI ACTGG 2 cut(s) 101, 457
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 4 cut(s) 506, 860, 876, 952
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 1161
Bst4CI ACNGT 5 cut(s) 14, 59, 303, 558, 1037
Bst6I CTCTTC 2 cut(s) 342, 1041
BstAPI GCANNNNNTGC 1 cut(s) 642
BstC8I GCNNGC 3 cut(s) 584, 795, 998
BstDSI CCRYGG 1 cut(s) 415
BstF5I GGATG 4 cut(s) 241, 1000, 1213, 1258
BstFNI CGCG 1 cut(s) 1263
BstHHI GCGC 1 cut(s) 1265
BstKTI GATC 4 cut(s) 509, 863, 879, 955
BstMBI GATC 4 cut(s) 506, 860, 876, 952
BstMWI GCNNNNNNNGC 5 cut(s) 320, 633, 642, 853, 1337
BstNI CCWGG 1 cut(s) 1161
BstNSI RCATGY 2 cut(s) 856, 1144
BstSCI CCNGG 1 cut(s) 1159
BstUI CGCG 1 cut(s) 1263
BstV1I GCAGC 4 cut(s) 52, 247, 598, 598
BstV2I GAAGAC 2 cut(s) 99, 1287
Bsu15I ATCGAT 2 cut(s) 206, 720
BsuRI GGCC 1 cut(s) 1086
BsuTUI ATCGAT 2 cut(s) 206, 720
BtgI CCRYGG 1 cut(s) 415
BtrI CACGTC 1 cut(s) 1291
BtsCI GGATG 4 cut(s) 241, 1000, 1213, 1258
BtsI GCAGTG 2 cut(s) 1134, 1320
BtsIMutI CAGTG 3 cut(s) 450, 1134, 1320
BveI ACCTGC 1 cut(s) 1322
Cac8I GCNNGC 3 cut(s) 584, 795, 998
CfoI GCGC 1 cut(s) 1265
ClaI ATCGAT 2 cut(s) 206, 720
CseI GACGC 3 cut(s) 57, 266, 608
CsiI ACCWGGT 1 cut(s) 1159
Csp6I GTAC 2 cut(s) 470, 708
CviAII CATG 6 cut(s) 416, 510, 853, 1141, 1180, 1286
CviQI GTAC 2 cut(s) 470, 708
DpnI GATC 4 cut(s) 508, 862, 878, 954
DpnII GATC 4 cut(s) 506, 860, 876, 952
DraI TTTAAA 2 cut(s) 168, 552
Eam1104I CTCTTC 2 cut(s) 342, 1041
EarI CTCTTC 2 cut(s) 342, 1041
Ecl136II GAGCTC 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 629
Eco32I GATATC 1 cut(s) 724
Eco53kI GAGCTC 1 cut(s) 627
Eco57I CTGAAG 2 cut(s) 127, 182
Eco88I CYCGRG 1 cut(s) 628
EcoICRI GAGCTC 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 1159
EcoRV GATATC 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 629
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 6 cut(s) 419, 513, 856, 1144, 1183, 1289
FalI AAGNNNNNCTT 2 cut(s) 1302, 1334
FaqI GGGAC 1 cut(s) 332
FatI CATG 6 cut(s) 415, 509, 852, 1140, 1179, 1285
FblI GTMKAC 1 cut(s) 1156
Fnu4HI GCNGC 4 cut(s) 66, 261, 587, 612
FokI GGATG 4 cut(s) 228, 987, 1220, 1265
FriOI GRGCYC 1 cut(s) 629
Fsp4HI GCNGC 4 cut(s) 66, 261, 587, 612
FspBI CTAG 1 cut(s) 705
GlaI GCGC 1 cut(s) 1264
GluI GCNGC 4 cut(s) 66, 261, 587, 612
HaeIII GGCC 1 cut(s) 1086
HapII CCGG 5 cut(s) 33, 44, 473, 491, 711
HgaI GACGC 3 cut(s) 57, 266, 608
HhaI GCGC 1 cut(s) 1265
Hin1II CATG 6 cut(s) 419, 513, 856, 1144, 1183, 1289
Hin6I GCGC 1 cut(s) 1263
HinP1I GCGC 1 cut(s) 1263
HincII GTYRAC 1 cut(s) 1008
HindII GTYRAC 1 cut(s) 1008
HindIII AAGCTT 3 cut(s) 321, 833, 994
HpaI GTTAAC 1 cut(s) 1008
HpaII CCGG 5 cut(s) 33, 44, 473, 491, 711
HphI GGTGA 3 cut(s) 47, 71, 1234
Hpy166II GTNNAC 4 cut(s) 1008, 1132, 1151, 1157
Hpy188I TCNGA 9 cut(s) 80, 146, 178, 435, 603, 624, 652, 664, 748
Hpy188III TCNNGA 5 cut(s) 44, 491, 504, 729, 1277
Hpy8I GTNNAC 4 cut(s) 1008, 1132, 1151, 1157
Hpy99I CGWCG 2 cut(s) 14, 260
HpyAV CCTTC 2 cut(s) 819, 1112
HpyCH4III ACNGT 5 cut(s) 14, 59, 303, 558, 1037
HpyCH4IV ACGT 3 cut(s) 345, 1153, 1290
HpyCH4V TGCA 4 cut(s) 614, 645, 797, 1000
HpyF10VI GCNNNNNNNGC 5 cut(s) 320, 633, 642, 853, 1337
HpySE526I ACGT 3 cut(s) 345, 1153, 1290
Hsp92II CATG 6 cut(s) 419, 513, 856, 1144, 1183, 1289
HspAI GCGC 1 cut(s) 1263
Kpn2I TCCGGA 2 cut(s) 43, 490
KspAI GTTAAC 1 cut(s) 1008
Kzo9I GATC 4 cut(s) 506, 860, 876, 952
LmnI GCTCC 2 cut(s) 35, 493
Lsp1109I GCAGC 4 cut(s) 52, 247, 598, 598
LweI GCATC 3 cut(s) 901, 905, 1009
MabI ACCWGGT 1 cut(s) 1159
MaeI CTAG 1 cut(s) 705
MaeII ACGT 3 cut(s) 345, 1153, 1290
MaeIII GTNAC 3 cut(s) 558, 1293, 1334
MalI GATC 4 cut(s) 508, 862, 878, 954
MboI GATC 4 cut(s) 506, 860, 876, 952
MhlI GDGCHC 1 cut(s) 629
MluCI AATT 4 cut(s) 410, 445, 646, 736
MlyI GAGTC 3 cut(s) 383, 529, 1009
MnlI CCTC 6 cut(s) 184, 534, 663, 935, 1075, 1096
MroI TCCGGA 2 cut(s) 43, 490
MseI TTAA 8 cut(s) 51, 167, 458, 551, 837, 1007, 1041, 1112
MslI CAYNNNNRTG 1 cut(s) 1139
MspI CCGG 5 cut(s) 33, 44, 473, 491, 711
MspR9I CCNGG 1 cut(s) 1161
Mva1269I GAATGC 1 cut(s) 795
MvaI CCWGG 1 cut(s) 1161
MvnI CGCG 1 cut(s) 1263
MwoI GCNNNNNNNGC 5 cut(s) 320, 633, 642, 853, 1337
NcoI CCATGG 1 cut(s) 415
NdeII GATC 4 cut(s) 506, 860, 876, 952
NlaIII CATG 6 cut(s) 419, 513, 856, 1144, 1183, 1289
NlaIV GGNNCC 1 cut(s) 31
NspI RCATGY 2 cut(s) 856, 1144
PaeR7I CTCGAG 1 cut(s) 628
PciI ACATGT 1 cut(s) 1140
PctI GAATGC 1 cut(s) 795
PfeI GAWTC 9 cut(s) 38, 147, 181, 212, 714, 743, 802, 945, 971
PflFI GACNNNGTC 1 cut(s) 1161
PkrI GCNGC 4 cut(s) 67, 262, 588, 613
PleI GAGTC 3 cut(s) 383, 528, 1009
PpsI GAGTC 3 cut(s) 383, 528, 1009
PscI ACATGT 1 cut(s) 1140
Psp124BI GAGCTC 1 cut(s) 629
Psp6I CCWGG 1 cut(s) 1159
PspGI CCWGG 1 cut(s) 1159
PspN4I GGNNCC 1 cut(s) 31
PspXI VCTCGAGB 1 cut(s) 628
PsyI GACNNNGTC 1 cut(s) 1161
RsaI GTAC 2 cut(s) 471, 709
RsaNI GTAC 2 cut(s) 470, 708
RseI CAYNNNNRTG 1 cut(s) 1139
SacI GAGCTC 1 cut(s) 629
SaqAI TTAA 8 cut(s) 51, 167, 458, 551, 837, 1007, 1041, 1112
SatI GCNGC 4 cut(s) 66, 261, 587, 612
Sau3AI GATC 4 cut(s) 506, 860, 876, 952
SchI GAGTC 3 cut(s) 383, 529, 1009
ScrFI CCNGG 1 cut(s) 1161
SduI GDGCHC 1 cut(s) 629
SexAI ACCWGGT 1 cut(s) 1159
SfaNI GCATC 3 cut(s) 901, 905, 1009
Sfr274I CTCGAG 1 cut(s) 628
SlaI CTCGAG 1 cut(s) 628
SmiMI CAYNNNNRTG 1 cut(s) 1139
SmlI CTYRAG 1 cut(s) 628
SmoI CTYRAG 1 cut(s) 628
SpeI ACTAGT 1 cut(s) 704
Sse9I AATT 4 cut(s) 410, 445, 646, 736
SsiI CCGC 2 cut(s) 1220, 1261
SspMI CTAG 1 cut(s) 705
SstI GAGCTC 1 cut(s) 629
StyD4I CCNGG 1 cut(s) 1159
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 5 cut(s) 14, 59, 303, 558, 1037
TaiI ACGT 3 cut(s) 348, 1156, 1293
TaqI TCGA 7 cut(s) 206, 255, 372, 440, 629, 677, 720
TasI AATT 4 cut(s) 410, 445, 646, 736
TfiI GAWTC 9 cut(s) 38, 147, 181, 212, 714, 743, 802, 945, 971
Tru1I TTAA 8 cut(s) 51, 167, 458, 551, 837, 1007, 1041, 1112
Tru9I TTAA 8 cut(s) 51, 167, 458, 551, 837, 1007, 1041, 1112
TscAI CASTG 3 cut(s) 457, 1134, 1320
TseI GCWGC 4 cut(s) 65, 260, 586, 611
TspDTI ATGAA 4 cut(s) 17, 105, 458, 564
TspGWI ACGGA 2 cut(s) 222, 993
TspRI CASTG 3 cut(s) 457, 1134, 1320
Tth111I GACNNNGTC 1 cut(s) 1161
XapI RAATTY 1 cut(s) 445
XceI RCATGY 2 cut(s) 856, 1144
XcmI CCANNNNNNNNNTGG 2 cut(s) 93, 1186
XhoI CTCGAG 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 1156
XspI CTAG 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.