Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001985

Physical Location & Seq

Genomic Coordinates Reverse (-)

9832667 .. 9835279

Gene Structure 2613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26744.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGGTCTTGACGGAAACAATGGTGGAGGGGTTTGGTTAAACGGTGGTGGTGGAGAAAGGGAAGAGAACGAGGAAGGTTCATGGGGAAGGAATCAAGAAGATGGTTCTTCTCAGTTTAAGCCTATGCTTGAAGGTGATTGGTTTAGTAGTAACCAACCACATCCACAAGATCTTCAGATGTTACAGAATCAGCCAGATTTCAGATACTTTGGTGGTTTTCCTTTTAACCCTAATGATAATCTTCTTCTTCAACACTCTATTGATTCTTCTTCTTCTTGTTCTCCTTCTCAAGCTTTTAGTCTTGACCCTTCTCAGCAAAATCAGTTCTTGTCAACTAACAACAACAAGGGTTGTCTTCTCAATGTTCCTTCTTCTGCAAACCCTTTTGATAATGCTTTTGAGTTTGGCTCTGAATCTGGTTTTCTTAACCAAATCCATGCTCCTATTTCGATGGGGTTTGGTTCTTTGACACAATTGGGGAACAGGGATTTGAGTTCTGTTCCTGATTTCTTGTCTGCTCGGTCACTTCTTGCGCCGGAAAGCAACAACAACAACACAATGTTGTGTGGTGGTTTCACAGCTCCGTTGGAGTTGGAAGGTTTTGGTAGTCCTGCTAATGGTGGTTTTGTTGGGAACAGAGCGAAAGTTCTGAAGCCTTTAGAGGTGTTAGCATCGTCTGGTGCACAGCCTACTCTGTTCCAGAAACGTGCAGCTATGCGTCAGAGCTCTGGAAGCAAAATGGGAAATTCGGAGAGTTCGGGAATGAGGAGGTTTAGTGATGATGGAGATATGGATGAGACTGGGATTGAGGTTTCTGGGTTGAACTATGAGTCTGATGAGATAAATGAGAGCGGTAAAGCGGCTGAGAGTGTTCAGATTGGAGGAGGAGGAAAGGGTAAGAAGAAAGGTATGCCTGCTAAGAATCTGATGGCTGAGAGGAGAAGGAGGAAGAAGCTTAATGATAGGCTTTATATGCTTAGATCAGTTGTCCCCAAGATCAGCAAAATGGATAGAGCATCAATACTTGGAGATGCAATTGATTATCTGAAGGAACTTCTACAAAGGATCAATGATCTTCACAATGAACTTGAGTCAACTCCTCCTGGATCTTTGCCTCCAACTTCATCAAGCTTCCATCCGTTGACACCTACACCGCAAACTCTTTCTTGTCGTGTCAAGGAAGAGTTGTGTCCCTCTTCTTTACCAAGTCCTAAAGGCCAGCAAGCTAGAGTTGAGGTTAGATTAAGGGAAGGAAGAGCAGTGAACATTCATATGTTCTGTGGTCGTAGACCGGGTCTGTTGCTCGCTACCATGAAAGCTTTGGATAATCTTGGATTGGATGTTCAGCAAGCTGTGATCAGCTGTTTTAATGGGTTTGCCTTGGATGTTTTCCGCGCTGAGCAATGCCAAGAAGGACAAGAGATACTGCCTGATCAAATCAAAGCAGTGCTTTTCGATACAGCAGGGTATGCTGGTATGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010374 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

494

Amino Acids

53.54

Weight (kDa)

5.31

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	309 - 357	8.3e-08	Transcription factor SAC51 bHLH domain
HLH	PF00010	310 - 352	1.8e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	411 - 481	4.4e-11	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12860 AT1G12860 AT1G12860 AT3G26744 AT3G26744 AT3G26744 AT3G26744 AT3G26744
fragaria_vesca	FvH4_5g09300 FvH4_5g09300
malus_domestica	MD06G1132200.v1.1 MD09G1003800.v1.1 MD14G1148600.v1.1 MD17G1007400.v1.1
prunus_persica	Prupe.3G312800_v2.0.a1 Prupe.3G312800_v2.0.a1 Prupe.5G143200_v2.0.a1
pyrus_communis	pycom06g12380 pycom111g00280 pycom14g12340 pycom17g00300
rosa_chinensis	RchiOBHm_Chr2g0176421 RchiOBHm_Chr7g0188921
rosa_laevigata	RLG00000004651 RLG00000022412
rosa_multiflora	Rmu_co8326225.1_g000001 Rmu_co8487291.1_g000001 Rmu_sc0009140.1_g000010 Rmu_sc0011904.1_g000015 Rmu_ssc0000113.1_g000008
rosa_roxburghii	Rroxscaffold_2G00076450 Rroxscaffold_3G00265940
rosa_rugosa	Rorug02G0594200 Rorug02G0594200 Rorug06G0494600
rosa_samantha	Rh2AG672700 Rh2BG684200 Rh2CG647000 Rh2DG697800 Rh7AG099500 Rh7BG101600 Rh7CG102900 Rh7DG101300
rosa_wichuraiana	Rw2G055180 Rw7G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	852
AccI	GTMKAC	1 cut(s)	1288
AccII	CGCG	1 cut(s)	1395
AciI	CCGC	4 cut(s)	852, 860, 1154, 1393
AclWI	GGATC	2 cut(s)	1073, 1114
AcsI	RAATTY	1 cut(s)	745
AcuI	CTGAAG	3 cut(s)	158, 671, 1067
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	131, 251, 823
AjnI	CCWGG	1 cut(s)	1102
AloI	GAACNNNNNNTCC	2 cut(s)	1326, 1358
Alw21I	GWGCWC	2 cut(s)	685, 728
Alw26I	GTCTC	1 cut(s)	791
Alw44I	GTGCAC	1 cut(s)	681
AlwI	GGATC	2 cut(s)	1073, 1114
AoxI	GGCC	1 cut(s)	1216
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	1 cut(s)	745
AspLEI	GCGC	2 cut(s)	535, 1397
AsuC2I	CCSGG	1 cut(s)	1293
AsuHPI	GGTGA	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	685
BaeI	ACNNNNGTAYC	2 cut(s)	196, 229
BanII	GRGCYC	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	685, 728
BbvI	GCAGC	1 cut(s)	722
BccI	CCATC	5 cut(s)	95, 445, 776, 922, 1143
BciT130I	CCWGG	1 cut(s)	1104
BclI	TGATCA	2 cut(s)	1356, 1432
BcnI	CCSGG	1 cut(s)	1293
BcoDI	GTCTC	1 cut(s)	791
BfaI	CTAG	1 cut(s)	1227
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	711, 861
BlpI	GCTNAGC	1 cut(s)	1398
BlsI	GCNGC	2 cut(s)	712, 862
Bme1390I	CCNGG	2 cut(s)	1104, 1293
BmrFI	CCNGG	2 cut(s)	1104, 1293
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	3 cut(s)	680, 1021, 1025
BmuI	ACTGGG	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
Bpu1102I	GCTNAGC	1 cut(s)	1398
BpuEI	CTTGAG	2 cut(s)	273, 1109
BpuMI	CCSGG	1 cut(s)	1293
BsaJI	CCNNGG	1 cut(s)	1380
BsaXI	ACNNNNNCTCC	2 cut(s)	760, 790
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	805
Bse3DI	GCAATG	1 cut(s)	1409
BseBI	CCWGG	1 cut(s)	1104
BseDI	CCNNGG	1 cut(s)	1380
BseGI	GGATG	5 cut(s)	160, 799, 1135, 1345, 1390
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMI	GCAATG	1 cut(s)	1409
BseMII	CTCAG	5 cut(s)	125, 326, 855, 924, 1389
BseNI	ACTGG	1 cut(s)	805
BseRI	GAGGAG	5 cut(s)	781, 897, 900, 952, 1089
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	1395
BshFI	GGCC	1 cut(s)	1218
BsiHKAI	GWGCWC	2 cut(s)	685, 728
BsiSI	CCGG	2 cut(s)	536, 1292
BslFI	GGGAC	2 cut(s)	974, 1176
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	791
BsmFI	GGGAC	2 cut(s)	974, 1176
BsnI	GGCC	1 cut(s)	1218
Bsp1286I	GDGCHC	2 cut(s)	685, 728
Bsp143I	GATC	9 cut(s)	169, 980, 996, 1065, 1072, 1106, 1356, 1432, 1479
Bsp1720I	GCTNAGC	1 cut(s)	1398
BspACI	CCGC	4 cut(s)	852, 860, 1154, 1393
BspANI	GGCC	1 cut(s)	1218
BspCNI	CTCAG	5 cut(s)	124, 325, 856, 925, 1390
BspFNI	CGCG	1 cut(s)	1395
BspPI	GGATC	2 cut(s)	1073, 1114
BspQI	GCTCTTC	1 cut(s)	1249
BsrBI	CCGCTC	1 cut(s)	852
BsrDI	GCAATG	1 cut(s)	1409
BsrI	ACTGG	1 cut(s)	805
BssECI	CCNNGG	1 cut(s)	1380
BssMI	GATC	9 cut(s)	169, 980, 996, 1065, 1072, 1106, 1356, 1432, 1479
BssT1I	CCWWGG	1 cut(s)	1380
Bst2UI	CCWGG	1 cut(s)	1104
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	4 cut(s)	57, 1176, 1201, 1249
BstAPI	GCANNNNNTGC	1 cut(s)	1469
BstC8I	GCNNGC	5 cut(s)	915, 1220, 1224, 1305, 1350
BstDEI	CTNAG	7 cut(s)	111, 312, 864, 918, 933, 977, 1398
BstF5I	GGATG	5 cut(s)	160, 799, 1135, 1345, 1390
BstFNI	CGCG	1 cut(s)	1395
BstHHI	GCGC	2 cut(s)	535, 1397
BstKTI	GATC	9 cut(s)	172, 983, 999, 1068, 1075, 1109, 1359, 1435, 1482
BstMAI	GTCTC	1 cut(s)	791
BstMBI	GATC	9 cut(s)	169, 980, 996, 1065, 1072, 1106, 1356, 1432, 1479
BstMWI	GCNNNNNNNGC	3 cut(s)	732, 973, 1469
BstNI	CCWGG	1 cut(s)	1104
BstSCI	CCNGG	2 cut(s)	1102, 1291
BstSLI	GKGCMC	1 cut(s)	685
BstUI	CGCG	1 cut(s)	1395
BstV1I	GCAGC	1 cut(s)	722
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	2 cut(s)	169, 1106
BstYI	RGATCY	2 cut(s)	169, 1106
BsuRI	GGCC	1 cut(s)	1218
BtsCI	GGATG	5 cut(s)	160, 799, 1135, 1345, 1390
BtsI	GCAGTG	2 cut(s)	1266, 1452
BtsIMutI	CAGTG	2 cut(s)	1266, 1452
Cac8I	GCNNGC	5 cut(s)	915, 1220, 1224, 1305, 1350
CfoI	GCGC	2 cut(s)	535, 1397
CseI	GACGC	1 cut(s)	707
CviAII	CATG	3 cut(s)	81, 437, 1312
DdeI	CTNAG	7 cut(s)	111, 312, 864, 918, 933, 977, 1398
DpnI	GATC	9 cut(s)	171, 982, 998, 1067, 1074, 1108, 1358, 1434, 1481
DpnII	GATC	9 cut(s)	169, 980, 996, 1065, 1072, 1106, 1356, 1432, 1479
Eam1104I	CTCTTC	4 cut(s)	57, 1176, 1201, 1249
EarI	CTCTTC	4 cut(s)	57, 1176, 1201, 1249
Ecl136II	GAGCTC	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	1380
Eco24I	GRGCYC	1 cut(s)	728
Eco53kI	GAGCTC	1 cut(s)	726
Eco57I	CTGAAG	3 cut(s)	158, 671, 1067
EcoICRI	GAGCTC	1 cut(s)	726
EcoRII	CCWGG	1 cut(s)	1102
EcoT14I	CCWWGG	1 cut(s)	1380
EcoT38I	GRGCYC	1 cut(s)	728
ErhI	CCWWGG	1 cut(s)	1380
FaeI	CATG	3 cut(s)	84, 440, 1315
FalI	AAGNNNNNCTT	2 cut(s)	1434, 1466
FaqI	GGGAC	2 cut(s)	974, 1176
FatI	CATG	3 cut(s)	80, 436, 1311
FauNDI	CATATG	1 cut(s)	1272
FbaI	TGATCA	2 cut(s)	1356, 1432
FblI	GTMKAC	1 cut(s)	1288
Fnu4HI	GCNGC	2 cut(s)	711, 861
FokI	GGATG	5 cut(s)	147, 806, 1122, 1352, 1397
FriOI	GRGCYC	1 cut(s)	728
Fsp4HI	GCNGC	2 cut(s)	711, 861
FspBI	CTAG	1 cut(s)	1227
GlaI	GCGC	2 cut(s)	534, 1396
GluI	GCNGC	2 cut(s)	711, 861
HaeIII	GGCC	1 cut(s)	1218
HapII	CCGG	2 cut(s)	536, 1292
HgaI	GACGC	1 cut(s)	707
HhaI	GCGC	2 cut(s)	535, 1397
Hin1II	CATG	3 cut(s)	84, 440, 1315
Hin6I	GCGC	2 cut(s)	533, 1395
HinP1I	GCGC	2 cut(s)	533, 1395
HincII	GTYRAC	3 cut(s)	333, 1095, 1143
HindII	GTYRAC	3 cut(s)	333, 1095, 1143
HindIII	AAGCTT	4 cut(s)	291, 953, 1129, 1317
HinfI	GANTC	7 cut(s)	91, 187, 263, 413, 830, 922, 1091
HpaII	CCGG	2 cut(s)	536, 1292
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	6 cut(s)	333, 683, 1095, 1143, 1264, 1289
Hpy188III	TCNNGA	7 cut(s)	8, 95, 302, 503, 700, 729, 759
Hpy8I	GTNNAC	6 cut(s)	333, 683, 1095, 1143, 1264, 1289
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	4 cut(s)	377, 683, 710, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	732, 973, 1469
HpyF3I	CTNAG	7 cut(s)	111, 312, 864, 918, 933, 977, 1398
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	3 cut(s)	84, 440, 1315
HspAI	GCGC	2 cut(s)	533, 1395
Ksp22I	TGATCA	2 cut(s)	1356, 1432
Kzo9I	GATC	9 cut(s)	169, 980, 996, 1065, 1072, 1106, 1356, 1432, 1479
LguI	GCTCTTC	1 cut(s)	1249
LmnI	GCTCC	2 cut(s)	445, 586
Lsp1109I	GCAGC	1 cut(s)	722
LweI	GCATC	3 cut(s)	680, 1021, 1025
MaeI	CTAG	1 cut(s)	1227
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	3 cut(s)	149, 180, 522
MalI	GATC	9 cut(s)	171, 982, 998, 1067, 1074, 1108, 1358, 1434, 1481
MbiI	CCGCTC	1 cut(s)	852
MboI	GATC	9 cut(s)	169, 980, 996, 1065, 1072, 1106, 1356, 1432, 1479
MfeI	CAATTG	2 cut(s)	473, 1035
MflI	RGATCY	2 cut(s)	169, 1106
MhlI	GDGCHC	2 cut(s)	685, 728
MluCI	AATT	3 cut(s)	473, 745, 1035
MlyI	GAGTC	2 cut(s)	839, 1100
MmeI	TCCRAC	3 cut(s)	567, 573, 1142
MseI	TTAA	7 cut(s)	38, 117, 225, 426, 957, 1244, 1368
MslI	CAYNNNNRTG	1 cut(s)	1271
MspA1I	CMGCKG	1 cut(s)	1362
MspI	CCGG	2 cut(s)	536, 1292
MspR9I	CCNGG	2 cut(s)	1104, 1293
MunI	CAATTG	2 cut(s)	473, 1035
MvaI	CCWGG	1 cut(s)	1104
MvnI	CGCG	1 cut(s)	1395
MwoI	GCNNNNNNNGC	3 cut(s)	732, 973, 1469
NciI	CCSGG	1 cut(s)	1293
NdeI	CATATG	1 cut(s)	1272
NdeII	GATC	9 cut(s)	169, 980, 996, 1065, 1072, 1106, 1356, 1432, 1479
NlaIII	CATG	3 cut(s)	84, 440, 1315
NmuCI	GTSAC	1 cut(s)	522
PciSI	GCTCTTC	1 cut(s)	1249
PfeI	GAWTC	5 cut(s)	91, 187, 263, 413, 922
PflFI	GACNNNGTC	1 cut(s)	1293
PfoI	TCCNGGA	1 cut(s)	1102
PkrI	GCNGC	2 cut(s)	712, 862
PleI	GAGTC	2 cut(s)	838, 1099
PpsI	GAGTC	2 cut(s)	838, 1099
Psp124BI	GAGCTC	1 cut(s)	728
Psp6I	CCWGG	1 cut(s)	1102
PspGI	CCWGG	1 cut(s)	1102
PsuI	RGATCY	2 cut(s)	169, 1106
PsyI	GACNNNGTC	1 cut(s)	1293
PvuII	CAGCTG	1 cut(s)	1362
RseI	CAYNNNNRTG	1 cut(s)	1271
SacI	GAGCTC	1 cut(s)	728
SapI	GCTCTTC	1 cut(s)	1249
SaqAI	TTAA	7 cut(s)	38, 117, 225, 426, 957, 1244, 1368
SatI	GCNGC	2 cut(s)	711, 861
Sau3AI	GATC	9 cut(s)	169, 980, 996, 1065, 1072, 1106, 1356, 1432, 1479
SchI	GAGTC	2 cut(s)	839, 1100
ScrFI	CCNGG	2 cut(s)	1104, 1293
SduI	GDGCHC	2 cut(s)	685, 728
SfaNI	GCATC	3 cut(s)	680, 1021, 1025
SmiMI	CAYNNNNRTG	1 cut(s)	1271
SmlI	CTYRAG	2 cut(s)	288, 1088
SmoI	CTYRAG	2 cut(s)	288, 1088
Sse9I	AATT	3 cut(s)	473, 745, 1035
SsiI	CCGC	4 cut(s)	852, 860, 1154, 1393
SspMI	CTAG	1 cut(s)	1227
SstI	GAGCTC	1 cut(s)	728
StyD4I	CCNGG	2 cut(s)	1102, 1291
StyI	CCWWGG	1 cut(s)	1380
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	2 cut(s)	449, 1455
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	3 cut(s)	473, 745, 1035
TauI	GCSGC	1 cut(s)	863
TfiI	GAWTC	5 cut(s)	91, 187, 263, 413, 922
Tru1I	TTAA	7 cut(s)	38, 117, 225, 426, 957, 1244, 1368
Tru9I	TTAA	7 cut(s)	38, 117, 225, 426, 957, 1244, 1368
TscAI	CASTG	2 cut(s)	1266, 1452
TseFI	GTSAC	1 cut(s)	522
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	1 cut(s)	522
TspDTI	ATGAA	5 cut(s)	69, 1098, 1113, 1259, 1328
TspGWI	ACGGA	3 cut(s)	27, 573, 1128
TspRI	CASTG	2 cut(s)	1266, 1452
Tth111I	GACNNNGTC	1 cut(s)	1293
VneI	GTGCAC	1 cut(s)	681
XapI	RAATTY	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1318
XmiI	GTMKAC	1 cut(s)	1288
XspI	CTAG	1 cut(s)	1227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.