Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8326225.1

Orthogroup ID

OG0001985

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 950

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8326225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 949 bp

atgaacaacaatggcattcagggccattctgacgtcagagacttgacgttctcgcccagctttgctgacccagaaagcttgctgctcaaccaagtggactcttcgtcttcttgttctccatcttcctctgttttcaacaacctcgacccgtctcaggttcactactacctgcctcagaacccatcattgtcttctctgctcaatgctgtgcctaacaaccctctggaccatggctttgatttgggctgtgaaattgggtttcttgacaaccaaggctccggtggtggttcgagtttgatgaacaggggaggtggggttttaaccgggttcaatgatttgagctccaacacccacatgcaggctcagaatctgtgctccaatttgcaattctcaaccacccgtttgcctcatttgcttgagaatggtaataatttttcgggttttcggggtgttgatgatacttcaggcaatgctttgtttagcaataggtctaaaatgttgagacccctccagcccttatcttctgtgggagcacagccgactctttttcagaaaagggcggcgctgcggaagaatttgggtggactgggatccgaggggggactggtcttgagtaactatgaaggggataaggggaagagggacatgggggaagagaatgagaagaagaggaagtttagtggtggagatgatggcgaagatttgagtttcgatggctcgggtttgaactatgattcagatgagtttactgagaatactaagatggatgagaatgccaagaatggtggcaatagctccaatgctaatagtactgttactggtggggagcacaaggggaagaagaaagggttgcctgctaagaatctgatggctgagaggcgccgccggaagaagctcaatgatcggctgtatatgctgagatccgttgttccaaagatcagcaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

316

Amino Acids

34.07

Weight (kDa)

7.02

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12860 AT1G12860 AT1G12860 AT3G26744 AT3G26744 AT3G26744 AT3G26744 AT3G26744
fragaria_vesca	FvH4_5g09300 FvH4_5g09300
malus_domestica	MD06G1132200.v1.1 MD09G1003800.v1.1 MD14G1148600.v1.1 MD17G1007400.v1.1
prunus_persica	Prupe.3G312800_v2.0.a1 Prupe.3G312800_v2.0.a1 Prupe.5G143200_v2.0.a1
pyrus_communis	pycom06g12380 pycom111g00280 pycom14g12340 pycom17g00300
rosa_chinensis	RchiOBHm_Chr2g0176421 RchiOBHm_Chr7g0188921
rosa_laevigata	RLG00000004651 RLG00000022412
rosa_multiflora	Rmu_co8326225.1_g000001 Rmu_co8487291.1_g000001 Rmu_sc0009140.1_g000010 Rmu_sc0011904.1_g000015 Rmu_ssc0000113.1_g000008
rosa_roxburghii	Rroxscaffold_2G00076450 Rroxscaffold_3G00265940
rosa_rugosa	Rorug02G0594200 Rorug02G0594200 Rorug06G0494600
rosa_samantha	Rh2AG672700 Rh2BG684200 Rh2CG647000 Rh2DG697800 Rh7AG099500 Rh7BG101600 Rh7CG102900 Rh7DG101300
rosa_wichuraiana	Rw2G055180 Rw7G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	879
AciI	CCGC	3 cut(s)	560, 568, 883
AclWI	GGATC	3 cut(s)	585, 598, 915
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	2 cut(s)	33, 880
AfaI	GTAC	1 cut(s)	811
AfiI	CCNNNNNNNGG	2 cut(s)	154, 358
AgsI	TTSAA	3 cut(s)	136, 331, 727
AhdI	GACNNNNNGTC	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	5 cut(s)	60, 78, 342, 795, 895
AluI	AGCT	5 cut(s)	60, 78, 342, 795, 895
Alw21I	GWGCWC	4 cut(s)	344, 377, 535, 831
Alw26I	GTCTC	3 cut(s)	33, 156, 496
AlwI	GGATC	3 cut(s)	585, 598, 915
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	718
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	2 cut(s)	82, 565
ApoI	RAATTY	1 cut(s)	574
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	2 cut(s)	565, 882
AspS9I	GGNCC	2 cut(s)	22, 226
AsuC2I	CCSGG	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	718
AvaII	GGWCC	1 cut(s)	226
BamHI	GGATCC	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	344
BbsI	GAAGAC	2 cut(s)	99, 183
Bbv12I	GWGCWC	4 cut(s)	344, 377, 535, 831
BbvI	GCAGC	2 cut(s)	69, 552
BccI	CCATC	6 cut(s)	127, 190, 686, 707, 757, 862
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	3 cut(s)	33, 156, 496
BfoI	RGCGCY	2 cut(s)	566, 883
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	4 cut(s)	83, 561, 566, 883
BlsI	GCNGC	4 cut(s)	84, 562, 567, 884
BmcAI	AGTACT	1 cut(s)	811
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	226
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	718
BmgT120I	GGNCC	2 cut(s)	22, 226
BmiI	GGNNCC	3 cut(s)	277, 592, 881
BmrFI	CCNGG	1 cut(s)	325
BmrI	ACTGGG	1 cut(s)	596
BmuI	ACTGGG	1 cut(s)	596
BpiI	GAAGAC	2 cut(s)	99, 183
BpmI	CTGGAG	1 cut(s)	494
BpuEI	CTTGAG	2 cut(s)	437, 631
BpuMI	CCSGG	1 cut(s)	325
BsaHI	GRCGYC	2 cut(s)	33, 880
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	3 cut(s)	229, 271, 594
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 290, 300, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 358
Bse1I	ACTGG	3 cut(s)	591, 609, 823
Bse3DI	GCAATG	1 cut(s)	475
BseDI	CCNNGG	3 cut(s)	229, 271, 594
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	2 cut(s)	154, 358
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	6 cut(s)	167, 188, 377, 741, 864, 908
BseNI	ACTGG	3 cut(s)	591, 609, 823
BseXI	GCAGC	2 cut(s)	69, 552
BseYI	CCCAGC	1 cut(s)	56
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	879
BsiHKAI	GWGCWC	4 cut(s)	344, 377, 535, 831
BsiHKCI	CYCGRG	1 cut(s)	718
BsiSI	CCGG	3 cut(s)	279, 324, 886
BslFI	GGGAC	2 cut(s)	615, 656
BslI	CCNNNNNNNGG	2 cut(s)	154, 358
BsmAI	GTCTC	3 cut(s)	33, 156, 496
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	2 cut(s)	615, 656
BsmI	GAATGC	2 cut(s)	15, 778
BsnI	GGCC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	1 cut(s)	718
Bsp1286I	GDGCHC	4 cut(s)	344, 377, 535, 831
Bsp143I	GATC	4 cut(s)	590, 901, 920, 936
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	3 cut(s)	560, 568, 883
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	6 cut(s)	166, 187, 376, 742, 865, 909
BspLI	GGNNCC	3 cut(s)	277, 592, 881
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	3 cut(s)	585, 598, 915
BspT107I	GGYRCC	1 cut(s)	879
BspTNI	GGTCTC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	475
BsrI	ACTGG	3 cut(s)	591, 609, 823
BssECI	CCNNGG	3 cut(s)	229, 271, 594
BssMI	GATC	4 cut(s)	590, 901, 920, 936
BssNI	GRCGYC	2 cut(s)	33, 880
BssT1I	CCWWGG	2 cut(s)	229, 271
Bst4CI	ACNGT	1 cut(s)	814
Bst6I	CTCTTC	4 cut(s)	106, 632, 648, 662
BstACI	GRCGYC	2 cut(s)	33, 880
BstC8I	GCNNGC	3 cut(s)	80, 360, 855
BstDEI	CTNAG	8 cut(s)	153, 174, 363, 750, 759, 858, 873, 917
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	772
BstH2I	RGCGCY	2 cut(s)	566, 883
BstHHI	GCGC	2 cut(s)	565, 882
BstKTI	GATC	4 cut(s)	593, 904, 923, 939
BstMAI	GTCTC	3 cut(s)	33, 156, 496
BstMBI	GATC	4 cut(s)	590, 901, 920, 936
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 412, 913
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	69, 552
BstV2I	GAAGAC	2 cut(s)	99, 183
BstX2I	RGATCY	2 cut(s)	590, 920
BstYI	RGATCY	2 cut(s)	590, 920
BsuRI	GGCC	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	772
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	3 cut(s)	80, 360, 855
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	2 cut(s)	565, 882
Cfr13I	GGNCC	2 cut(s)	22, 226
Csp6I	GTAC	1 cut(s)	810
CspCI	CAANNNNNGTGG	2 cut(s)	766, 801
CviAII	CATG	3 cut(s)	230, 355, 646
CviQI	GTAC	1 cut(s)	810
DdeI	CTNAG	8 cut(s)	153, 174, 363, 750, 759, 858, 873, 917
DinI	GGCGCC	1 cut(s)	881
DpnI	GATC	4 cut(s)	592, 903, 922, 938
DpnII	GATC	4 cut(s)	590, 901, 920, 936
DriI	GACNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	4 cut(s)	106, 632, 648, 662
Eam1105I	GACNNNNNGTC	1 cut(s)	103
EarI	CTCTTC	4 cut(s)	106, 632, 648, 662
Ecl136II	GAGCTC	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	229, 271
Eco24I	GRGCYC	1 cut(s)	344
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	718
EcoICRI	GAGCTC	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	229, 271
EcoT38I	GRGCYC	1 cut(s)	344
EgeI	GGCGCC	1 cut(s)	881
EheI	GGCGCC	1 cut(s)	881
ErhI	CCWWGG	2 cut(s)	229, 271
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	3 cut(s)	233, 358, 649
FaiI	YATR	7 cut(s)	231, 356, 621, 647, 732, 912, 914
FaqI	GGGAC	2 cut(s)	615, 656
FatI	CATG	3 cut(s)	229, 354, 645
Fnu4HI	GCNGC	4 cut(s)	83, 561, 566, 883
FokI	GGATG	1 cut(s)	779
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	4 cut(s)	83, 561, 566, 883
GlaI	GCGC	2 cut(s)	564, 881
GluI	GCNGC	4 cut(s)	83, 561, 566, 883
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	2 cut(s)	566, 883
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	3 cut(s)	279, 324, 886
HhaI	GCGC	2 cut(s)	565, 882
Hin1I	GRCGYC	2 cut(s)	33, 880
Hin1II	CATG	3 cut(s)	233, 358, 649
Hin6I	GCGC	2 cut(s)	563, 880
HinP1I	GCGC	2 cut(s)	563, 880
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	5 cut(s)	98, 367, 541, 734, 862
HpaII	CCGG	3 cut(s)	279, 324, 886
Hpy166II	GTNNAC	4 cut(s)	97, 160, 584, 747
Hpy188I	TCNGA	8 cut(s)	31, 38, 177, 366, 552, 595, 739, 867
Hpy188III	TCNNGA	3 cut(s)	224, 263, 610
Hpy8I	GTNNAC	4 cut(s)	97, 160, 584, 747
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	2 cut(s)	33, 47
HpyCH4V	TGCA	2 cut(s)	358, 385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 412, 913
HpyF3I	CTNAG	8 cut(s)	153, 174, 363, 750, 759, 858, 873, 917
HpySE526I	ACGT	2 cut(s)	33, 47
Hsp92I	GRCGYC	2 cut(s)	33, 880
Hsp92II	CATG	3 cut(s)	233, 358, 649
HspAI	GCGC	2 cut(s)	563, 880
KasI	GGCGCC	1 cut(s)	879
Kzo9I	GATC	4 cut(s)	590, 901, 920, 936
LmnI	GCTCC	6 cut(s)	281, 347, 380, 530, 800, 826
Lsp1109I	GCAGC	2 cut(s)	69, 552
MaeII	ACGT	2 cut(s)	33, 47
MaeIII	GTNAC	2 cut(s)	614, 814
MalI	GATC	4 cut(s)	592, 903, 922, 938
MboI	GATC	4 cut(s)	590, 901, 920, 936
MflI	RGATCY	2 cut(s)	590, 920
MhlI	GDGCHC	4 cut(s)	344, 377, 535, 831
MluCI	AATT	5 cut(s)	252, 379, 386, 430, 574
Mly113I	GGCGCC	1 cut(s)	880
MlyI	GAGTC	2 cut(s)	92, 535
MmeI	TCCRAC	1 cut(s)	369
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	3 cut(s)	279, 324, 886
MspR9I	CCNGG	1 cut(s)	325
Mva1269I	GAATGC	2 cut(s)	15, 778
MwoI	GCNNNNNNNGC	3 cut(s)	21, 412, 913
NarI	GGCGCC	1 cut(s)	880
NciI	CCSGG	1 cut(s)	325
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	4 cut(s)	590, 901, 920, 936
NlaIII	CATG	3 cut(s)	233, 358, 649
NlaIV	GGNNCC	3 cut(s)	277, 592, 881
NspI	RCATGY	1 cut(s)	358
PctI	GAATGC	2 cut(s)	15, 778
PfeI	GAWTC	3 cut(s)	367, 734, 862
PkrI	GCNGC	4 cut(s)	84, 562, 567, 884
PleI	GAGTC	2 cut(s)	92, 535
PluTI	GGCGCC	1 cut(s)	883
PpsI	GAGTC	2 cut(s)	92, 535
Psp124BI	GAGCTC	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	56
PspN4I	GGNNCC	3 cut(s)	277, 592, 881
PspPI	GGNCC	2 cut(s)	22, 226
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	2 cut(s)	590, 920
RsaI	GTAC	1 cut(s)	811
RsaNI	GTAC	1 cut(s)	810
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	4 cut(s)	83, 561, 566, 883
Sau3AI	GATC	4 cut(s)	590, 901, 920, 936
Sau96I	GGNCC	2 cut(s)	22, 226
ScaI	AGTACT	1 cut(s)	811
SchI	GAGTC	2 cut(s)	92, 535
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	4 cut(s)	344, 377, 535, 831
SfoI	GGCGCC	1 cut(s)	881
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	2 cut(s)	416, 610
SmoI	CTYRAG	2 cut(s)	416, 610
Sse9I	AATT	5 cut(s)	252, 379, 386, 430, 574
SsiI	CCGC	3 cut(s)	560, 568, 883
SspDI	GGCGCC	1 cut(s)	879
SstI	GAGCTC	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	2 cut(s)	229, 271
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	2 cut(s)	36, 50
TaqI	TCGA	3 cut(s)	144, 290, 711
TasI	AATT	5 cut(s)	252, 379, 386, 430, 574
TatI	WGTACW	1 cut(s)	809
TauI	GCSGC	2 cut(s)	563, 885
TfiI	GAWTC	3 cut(s)	367, 734, 862
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseI	GCWGC	2 cut(s)	82, 565
TspDTI	ATGAA	3 cut(s)	17, 314, 636
TspGWI	ACGGA	1 cut(s)	913
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	574
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
ZraI	GACGTC	1 cut(s)	34
ZrmI	AGTACT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.