Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001985

Physical Location & Seq

Genomic Coordinates Forward (+)

59317378 .. 59320342

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGCTGCCGAGGCTCAACGGGGTTGTTTGGATGGAGGACAGGGAGGACAGAGACGCCGGCGAGTGGGCCAGAACCGCCGCGGCCGCCGGCTCCGGGAACAGCAAGGACGAGATGGGTTCTCTGTCGAATTTCAAATCCATGCTGGAGGTTGAAGATGAGTGGACGTACATGAACAACAATGGCATTCAGGGCCATTCTGACGTCAGAGACTTGACGTTCTCGCCCAGCTTTGCTGACCCAGAAAGCTTGCTGCTCAACCAAGTGGACTCTTCGTCTTCTTGTTCTCCATCTTCCTCTGTTTTCAACAACCTCGACCCGTCTCAGGTTCACTACTACCTGCCTCAGAACCCATCATTGTCTTCTCTGCTCAATGCTGTGCCCAACAACCCTTTGGACCATGGCTTTGATTTGGGCTGTGAAATTGGGTTTCTTGACAACCAAGGCTCCGGTGGTGGTTCGAGTTTGATGAACAGGGGAGGTGGGGTTTTAACCGGGTTCAATGATTTGAGCTCCAACACCCACATGCAGGCTCAGAATCTGTGCTCCAATTTGCAGTTCTCAACCACCCGTTTGCCTCATTTGCTTGAGAATGGTAATAATTTTTCGGGTTTTCGGGGTGTTGATGATACTTCAGGCAATACTTTGTTTAGCAATAGGTCCAAAATGCTGAGACCCCTTCAGCCCTTATCTTCTGTGGGAGCACAGCCGACTCTTTTTCAGAAAAGGGCGGCGCTGCGGAAGAATTTGGGTGGGAATGGCGGCAATTTGGGTGGTTTGGGATCGGAGGGGGGACTGGTTTTGAGTAACTATGAAGGGGATAAGGGGAAGAGGGACATGGGGGAAGAGAATGAGAAGAAGAGGAAGTTTAGTGGTGGAGATGATGGTGAAGATTTGAGTTTCGATGGCTCGGGTTTGAACTATGATTCAGATGAGTTTACTGAGAATACTAAGATGGATGAGAATGCCAAGAATGGTGGGAATAGCTCCAATGCTAATAGTACTGTTACTGGTGGGGAGCACAAGGGGAAGAAGAAAGGGTTGCCTGCCAAGAATCTGATGGCTGAGAGGCGCCGCCGGAAGAAGCTCAATGATCGGCTGTATATGCTGAGATCCGTTGTTCCAAAGATCAGCAAAATGGATAGGGCTTCTATCCTTGGGGATGCAATTGAGTACTTGAAAGAACTTCTGCAGAGGATCAACAACCTCCATAACGAATTGGAGTCGCTCCCTCCCGGGTCTGCATTGACACCTACCGCAAGTACTTTTCATCCTTTGACACCCACTCCACCTACTCTGCCTAGCCGTATTAAGGAAGAGCTTTGCCCCAGCTTACCTAGCCCGAATGGCCAACCTGCAAGGGTTGAAGTAAGGCTACGAGAAGGAAGAGCTGTGAACATCCACATGTTCTGTGGCAGAAGACCTGGTCTCTTGCTCTCCACTATGAGGGCTGTAGATAATCTTGGTTTAGACATCCAGCAAGCTGTCATTAGCTGCTTCAATGGGTTTGCCATGGATATATTCCGGGCTGAGCAATGCAAGGAAGGTCAAGACGTCCACCCTGAGCATATAAAGGCAGTACTTTTGGATTCAGCTGGGTTCCATGGCATGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

537

Amino Acids

58.33

Weight (kDa)

5.81

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	352 - 401	2.6e-07	Transcription factor SAC51 bHLH domain
HLH	PF00010	353 - 395	2.5e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	454 - 527	1.7e-11	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12860 AT1G12860 AT1G12860 AT3G26744 AT3G26744 AT3G26744 AT3G26744 AT3G26744
fragaria_vesca	FvH4_5g09300 FvH4_5g09300
malus_domestica	MD06G1132200.v1.1 MD09G1003800.v1.1 MD14G1148600.v1.1 MD17G1007400.v1.1
prunus_persica	Prupe.3G312800_v2.0.a1 Prupe.3G312800_v2.0.a1 Prupe.5G143200_v2.0.a1
pyrus_communis	pycom06g12380 pycom111g00280 pycom14g12340 pycom17g00300
rosa_chinensis	RchiOBHm_Chr2g0176421 RchiOBHm_Chr7g0188921
rosa_laevigata	RLG00000004651 RLG00000022412
rosa_multiflora	Rmu_co8326225.1_g000001 Rmu_co8487291.1_g000001 Rmu_sc0009140.1_g000010 Rmu_sc0011904.1_g000015 Rmu_ssc0000113.1_g000008
rosa_roxburghii	Rroxscaffold_2G00076450 Rroxscaffold_3G00265940
rosa_rugosa	Rorug02G0594200 Rorug02G0594200 Rorug06G0494600
rosa_samantha	Rh2AG672700 Rh2BG684200 Rh2CG647000 Rh2DG697800 Rh7AG099500 Rh7BG101600 Rh7CG102900 Rh7DG101300
rosa_wichuraiana	Rw2G055180 Rw7G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	204, 1554
Acc36I	ACCTGC	2 cut(s)	345, 1360
AccB1I	GGYRCC	1 cut(s)	1068
AccII	CGCG	1 cut(s)	80
AciI	CCGC	9 cut(s)	75, 78, 80, 84, 728, 736, 759, 1072, 1254
AclWI	GGATC	3 cut(s)	787, 1104, 1202
AcoI	YGGCCR	2 cut(s)	81, 1345
AcsI	RAATTY	2 cut(s)	127, 742
AcuI	CTGAAG	2 cut(s)	615, 662
AcyI	GRCGYC	4 cut(s)	54, 201, 1069, 1551
AfaI	GTAC	5 cut(s)	167, 1000, 1172, 1261, 1578
AfiI	CCNNNNNNNGG	6 cut(s)	63, 93, 322, 526, 1309, 1443
AflIII	ACRYGT	1 cut(s)	1401
AgsI	TTSAA	8 cut(s)	133, 152, 304, 499, 916, 1177, 1364, 1498
AhdI	GACNNNNNGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	1420
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
Alw21I	GWGCWC	4 cut(s)	512, 545, 703, 1020
Alw26I	GTCTC	5 cut(s)	45, 201, 324, 664, 1430
AlwI	GGATC	3 cut(s)	787, 1104, 1202
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	2 cut(s)	907, 1232
AoxI	GGCC	4 cut(s)	66, 81, 190, 1345
ApeKI	GCWGC	4 cut(s)	4, 250, 733, 1491
ApoI	RAATTY	2 cut(s)	127, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AspLEI	GCGC	2 cut(s)	733, 1071
AspS9I	GGNCC	4 cut(s)	66, 190, 394, 657
AsuC2I	CCSGG	5 cut(s)	94, 493, 1233, 1234, 1523
AsuHPI	GGTGA	1 cut(s)	896
AvaI	CYCGRG	2 cut(s)	907, 1232
AvaII	GGWCC	2 cut(s)	394, 657
BaeGI	GKGCMC	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	1347
BanI	GGYRCC	1 cut(s)	1068
BanII	GRGCYC	1 cut(s)	512
BarI	GAAGNNNNNNTAC	2 cut(s)	1356, 1388
BbsI	GAAGAC	3 cut(s)	267, 351, 1423
Bbv12I	GWGCWC	4 cut(s)	512, 545, 703, 1020
BbvI	GCAGC	3 cut(s)	237, 720, 1478
BccI	CCATC	8 cut(s)	25, 106, 295, 358, 875, 896, 946, 1051
BceAI	ACGGC	1 cut(s)	1287
BciT130I	CCWGG	1 cut(s)	1422
BcnI	CCSGG	5 cut(s)	94, 493, 1233, 1234, 1523
BcoDI	GTCTC	5 cut(s)	45, 201, 324, 664, 1430
BfaI	CTAG	2 cut(s)	1299, 1335
BfmI	CTRYAG	2 cut(s)	1187, 1449
BfoI	RGCGCY	2 cut(s)	734, 1072
BfuAI	ACCTGC	2 cut(s)	345, 1360
BglI	GCCNNNNNGGC	1 cut(s)	1344
BlpI	GCTNAGC	1 cut(s)	1527
BmcAI	AGTACT	4 cut(s)	1000, 1172, 1261, 1578
Bme1390I	CCNGG	6 cut(s)	94, 493, 1233, 1234, 1422, 1523
Bme18I	GGWCC	2 cut(s)	394, 657
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmeT110I	CYCGRG	2 cut(s)	907, 1232
BmgT120I	GGNCC	4 cut(s)	66, 190, 394, 657
BmiI	GGNNCC	4 cut(s)	91, 445, 1070, 1598
BmrFI	CCNGG	6 cut(s)	94, 493, 1233, 1234, 1422, 1523
BmsI	GCATC	1 cut(s)	1150
BpiI	GAAGAC	3 cut(s)	267, 351, 1423
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	1560
Bpu1102I	GCTNAGC	1 cut(s)	1527
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	5 cut(s)	94, 493, 1233, 1234, 1523
BsaHI	GRCGYC	4 cut(s)	54, 201, 1069, 1551
BsaI	GGTCTC	2 cut(s)	664, 1430
BsaJI	CCNNGG	8 cut(s)	8, 78, 397, 439, 1153, 1232, 1509, 1600
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	6 cut(s)	428, 458, 468, 498, 1267, 1297
Bsc4I	CCNNNNNNNGG	6 cut(s)	63, 93, 322, 526, 1309, 1443
Bse118I	RCCGGY	2 cut(s)	56, 86
Bse1I	ACTGG	2 cut(s)	798, 1012
Bse3DI	GCAATG	1 cut(s)	1538
BseBI	CCWGG	1 cut(s)	1422
BseDI	CCNNGG	8 cut(s)	8, 78, 397, 439, 1153, 1232, 1509, 1600
BseGI	GGATG	6 cut(s)	36, 961, 1165, 1267, 1395, 1470
BseLI	CCNNNNNNNGG	6 cut(s)	63, 93, 322, 526, 1309, 1443
BseMI	GCAATG	1 cut(s)	1538
BseMII	CTCAG	9 cut(s)	335, 356, 545, 659, 930, 1053, 1097, 1518, 1551
BseNI	ACTGG	2 cut(s)	798, 1012
BseSI	GKGCMC	1 cut(s)	381
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	237, 720, 1478
BseYI	CCCAGC	3 cut(s)	224, 1325, 1592
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	4 cut(s)	68, 83, 192, 1347
BshNI	GGYRCC	1 cut(s)	1068
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	4 cut(s)	512, 545, 703, 1020
BsiHKCI	CYCGRG	2 cut(s)	907, 1232
BsiSI	CCGG	8 cut(s)	57, 87, 93, 447, 492, 1075, 1233, 1522
BslFI	GGGAC	2 cut(s)	804, 845
BslI	CCNNNNNNNGG	6 cut(s)	63, 93, 322, 526, 1309, 1443
BsmAI	GTCTC	5 cut(s)	45, 201, 324, 664, 1430
BsmBI	CGTCTC	2 cut(s)	45, 324
BsmFI	GGGAC	2 cut(s)	804, 845
BsmI	GAATGC	2 cut(s)	183, 967
BsnI	GGCC	4 cut(s)	68, 83, 192, 1347
Bso31I	GGTCTC	2 cut(s)	664, 1430
BsoBI	CYCGRG	2 cut(s)	907, 1232
Bsp1286I	GDGCHC	5 cut(s)	381, 512, 545, 703, 1020
Bsp143I	GATC	5 cut(s)	779, 1090, 1109, 1125, 1194
Bsp1720I	GCTNAGC	1 cut(s)	1527
Bsp19I	CCATGG	3 cut(s)	397, 1509, 1600
BspACI	CCGC	9 cut(s)	75, 78, 80, 84, 728, 736, 759, 1072, 1254
BspANI	GGCC	4 cut(s)	68, 83, 192, 1347
BspCNI	CTCAG	9 cut(s)	334, 355, 544, 660, 931, 1054, 1098, 1519, 1552
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	4 cut(s)	91, 445, 1070, 1598
BspMAI	CTGCAG	1 cut(s)	1191
BspMI	ACCTGC	2 cut(s)	345, 1360
BspPI	GGATC	3 cut(s)	787, 1104, 1202
BspQI	GCTCTTC	2 cut(s)	1308, 1378
BspT107I	GGYRCC	1 cut(s)	1068
BspTNI	GGTCTC	2 cut(s)	664, 1430
BsrDI	GCAATG	1 cut(s)	1538
BsrFI	RCCGGY	2 cut(s)	56, 86
BsrI	ACTGG	2 cut(s)	798, 1012
BssAI	RCCGGY	2 cut(s)	56, 86
BssECI	CCNNGG	8 cut(s)	8, 78, 397, 439, 1153, 1232, 1509, 1600
BssMI	GATC	5 cut(s)	779, 1090, 1109, 1125, 1194
BssNI	GRCGYC	4 cut(s)	54, 201, 1069, 1551
BssT1I	CCWWGG	5 cut(s)	397, 439, 1153, 1509, 1600
Bst2UI	CCWGG	1 cut(s)	1422
Bst4CI	ACNGT	1 cut(s)	1003
Bst6I	CTCTTC	6 cut(s)	274, 821, 837, 851, 1308, 1378
BstACI	GRCGYC	4 cut(s)	54, 201, 1069, 1551
BstC8I	GCNNGC	6 cut(s)	58, 88, 248, 528, 1044, 1479
BstDSI	CCRYGG	4 cut(s)	78, 397, 1509, 1600
BstF5I	GGATG	6 cut(s)	36, 961, 1165, 1267, 1395, 1470
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	2 cut(s)	734, 1072
BstHHI	GCGC	2 cut(s)	733, 1071
BstKTI	GATC	5 cut(s)	782, 1093, 1112, 1128, 1197
BstMAI	GTCTC	5 cut(s)	45, 201, 324, 664, 1430
BstMBI	GATC	5 cut(s)	779, 1090, 1109, 1125, 1194
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 74, 83, 189, 580, 1102, 1335, 1344
BstNI	CCWGG	1 cut(s)	1422
BstNSI	RCATGY	2 cut(s)	526, 1405
BstSCI	CCNGG	6 cut(s)	92, 491, 1231, 1232, 1420, 1521
BstSFI	CTRYAG	2 cut(s)	1187, 1449
BstSLI	GKGCMC	1 cut(s)	381
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	237, 720, 1478
BstV2I	GAAGAC	3 cut(s)	267, 351, 1423
BstX2I	RGATCY	1 cut(s)	1109
BstYI	RGATCY	1 cut(s)	1109
BstZI	CGGCCG	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	68, 83, 192, 1347
BtgI	CCRYGG	4 cut(s)	78, 397, 1509, 1600
BtsCI	GGATG	6 cut(s)	36, 961, 1165, 1267, 1395, 1470
BveI	ACCTGC	2 cut(s)	345, 1360
Cac8I	GCNNGC	6 cut(s)	58, 88, 248, 528, 1044, 1479
CaiI	CAGNNNCTG	1 cut(s)	538
CciNI	GCGGCCGC	1 cut(s)	81
CfoI	GCGC	2 cut(s)	733, 1071
Cfr10I	RCCGGY	2 cut(s)	56, 86
Cfr13I	GGNCC	4 cut(s)	66, 190, 394, 657
Cfr42I	CCGCGG	1 cut(s)	81
Cfr9I	CCCGGG	1 cut(s)	1232
CseI	GACGC	1 cut(s)	62
CsiI	ACCWGGT	1 cut(s)	1420
Csp6I	GTAC	5 cut(s)	166, 999, 1171, 1260, 1577
CspCI	CAANNNNNGTGG	4 cut(s)	751, 786, 955, 990
CviAII	CATG	9 cut(s)	139, 169, 398, 523, 835, 1402, 1510, 1601, 1606
CviQI	GTAC	5 cut(s)	166, 999, 1171, 1260, 1577
DinI	GGCGCC	1 cut(s)	1070
DpnI	GATC	5 cut(s)	781, 1092, 1111, 1127, 1196
DpnII	GATC	5 cut(s)	779, 1090, 1109, 1125, 1194
DriI	GACNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	2 cut(s)	81, 1345
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	6 cut(s)	274, 821, 837, 851, 1308, 1378
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	6 cut(s)	274, 821, 837, 851, 1308, 1378
Ecl136II	GAGCTC	1 cut(s)	510
EclXI	CGGCCG	1 cut(s)	81
Eco130I	CCWWGG	5 cut(s)	397, 439, 1153, 1509, 1600
Eco24I	GRGCYC	1 cut(s)	512
Eco31I	GGTCTC	2 cut(s)	664, 1430
Eco47I	GGWCC	2 cut(s)	394, 657
Eco52I	CGGCCG	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	510
Eco57I	CTGAAG	2 cut(s)	615, 662
Eco88I	CYCGRG	2 cut(s)	907, 1232
EcoICRI	GAGCTC	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	1420
EcoT14I	CCWWGG	5 cut(s)	397, 439, 1153, 1509, 1600
EcoT38I	GRGCYC	1 cut(s)	512
EgeI	GGCGCC	1 cut(s)	1070
EheI	GGCGCC	1 cut(s)	1070
ErhI	CCWWGG	5 cut(s)	397, 439, 1153, 1509, 1600
Esp3I	CGTCTC	2 cut(s)	45, 324
FaeI	CATG	9 cut(s)	142, 172, 401, 526, 838, 1405, 1513, 1604, 1609
FaqI	GGGAC	2 cut(s)	804, 845
FatI	CATG	9 cut(s)	138, 168, 397, 522, 834, 1401, 1509, 1600, 1605
FokI	GGATG	6 cut(s)	43, 968, 1172, 1254, 1382, 1457
FriOI	GRGCYC	1 cut(s)	512
FspBI	CTAG	2 cut(s)	1299, 1335
GlaI	GCGC	2 cut(s)	732, 1070
GsaI	CCCAGC	3 cut(s)	228, 1329, 1596
GsuI	CTGGAG	1 cut(s)	164
HaeII	RGCGCY	2 cut(s)	734, 1072
HaeIII	GGCC	4 cut(s)	68, 83, 192, 1347
HapII	CCGG	8 cut(s)	57, 87, 93, 447, 492, 1075, 1233, 1522
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	2 cut(s)	733, 1071
Hin1I	GRCGYC	4 cut(s)	54, 201, 1069, 1551
Hin1II	CATG	9 cut(s)	142, 172, 401, 526, 838, 1405, 1513, 1604, 1609
Hin6I	GCGC	2 cut(s)	731, 1069
HinP1I	GCGC	2 cut(s)	731, 1069
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	7 cut(s)	266, 535, 709, 923, 1051, 1220, 1586
HpaII	CCGG	8 cut(s)	57, 87, 93, 447, 492, 1075, 1233, 1522
HphI	GGTGA	1 cut(s)	896
Hpy166II	GTNNAC	6 cut(s)	162, 265, 328, 936, 1393, 1555
Hpy188I	TCNGA	8 cut(s)	199, 206, 345, 534, 720, 784, 928, 1056
Hpy188III	TCNNGA	2 cut(s)	431, 1547
Hpy8I	GTNNAC	6 cut(s)	162, 265, 328, 936, 1393, 1555
HpyAV	CCTTC	4 cut(s)	686, 806, 1373, 1535
HpyCH4III	ACNGT	1 cut(s)	1003
HpyCH4IV	ACGT	4 cut(s)	164, 201, 215, 1551
HpyCH4V	TGCA	7 cut(s)	526, 553, 1163, 1189, 1241, 1355, 1536
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 74, 83, 189, 580, 1102, 1335, 1344
HpySE526I	ACGT	4 cut(s)	164, 201, 215, 1551
Hsp92I	GRCGYC	4 cut(s)	54, 201, 1069, 1551
Hsp92II	CATG	9 cut(s)	142, 172, 401, 526, 838, 1405, 1513, 1604, 1609
HspAI	GCGC	2 cut(s)	731, 1069
KasI	GGCGCC	1 cut(s)	1068
KroI	GCCGGC	2 cut(s)	56, 86
KroNI	GCCGGC	2 cut(s)	58, 88
KspI	CCGCGG	1 cut(s)	81
Kzo9I	GATC	5 cut(s)	779, 1090, 1109, 1125, 1194
LguI	GCTCTTC	2 cut(s)	1308, 1378
LmnI	GCTCC	8 cut(s)	95, 449, 515, 548, 698, 989, 1015, 1230
Lsp1109I	GCAGC	3 cut(s)	237, 720, 1478
LweI	GCATC	1 cut(s)	1150
MabI	ACCWGGT	1 cut(s)	1420
MaeI	CTAG	2 cut(s)	1299, 1335
MaeII	ACGT	4 cut(s)	164, 201, 215, 1551
MaeIII	GTNAC	2 cut(s)	803, 1003
MalI	GATC	5 cut(s)	781, 1092, 1111, 1127, 1196
MboI	GATC	5 cut(s)	779, 1090, 1109, 1125, 1194
MfeI	CAATTG	1 cut(s)	1164
MflI	RGATCY	1 cut(s)	1109
MhlI	GDGCHC	5 cut(s)	381, 512, 545, 703, 1020
MlsI	TGGCCA	1 cut(s)	1347
MluCI	AATT	8 cut(s)	127, 420, 547, 598, 742, 763, 1164, 1214
MluNI	TGGCCA	1 cut(s)	1347
Mly113I	GGCGCC	1 cut(s)	1069
MlyI	GAGTC	3 cut(s)	260, 703, 1229
MmeI	TCCRAC	1 cut(s)	537
Mox20I	TGGCCA	1 cut(s)	1347
MreI	CGCCGGCG	1 cut(s)	56
MroNI	GCCGGC	2 cut(s)	56, 86
MscI	TGGCCA	1 cut(s)	1347
MseI	TTAA	2 cut(s)	488, 1308
MslI	CAYNNNNRTG	2 cut(s)	521, 1400
Msp20I	TGGCCA	1 cut(s)	1347
MspA1I	CMGCKG	2 cut(s)	80, 1592
MspI	CCGG	8 cut(s)	57, 87, 93, 447, 492, 1075, 1233, 1522
MspR9I	CCNGG	6 cut(s)	94, 493, 1233, 1234, 1422, 1523
MunI	CAATTG	1 cut(s)	1164
Mva1269I	GAATGC	2 cut(s)	183, 967
MvaI	CCWGG	1 cut(s)	1422
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	8 cut(s)	10, 74, 83, 189, 580, 1102, 1335, 1344
NaeI	GCCGGC	2 cut(s)	58, 88
NarI	GGCGCC	1 cut(s)	1069
NciI	CCSGG	5 cut(s)	94, 493, 1233, 1234, 1523
NcoI	CCATGG	3 cut(s)	397, 1509, 1600
NdeII	GATC	5 cut(s)	779, 1090, 1109, 1125, 1194
NgoMIV	GCCGGC	2 cut(s)	56, 86
NlaIII	CATG	9 cut(s)	142, 172, 401, 526, 838, 1405, 1513, 1604, 1609
NlaIV	GGNNCC	4 cut(s)	91, 445, 1070, 1598
NmeAIII	GCCGAG	1 cut(s)	33
NotI	GCGGCCGC	1 cut(s)	81
NspI	RCATGY	2 cut(s)	526, 1405
PciI	ACATGT	1 cut(s)	1401
PciSI	GCTCTTC	2 cut(s)	1308, 1378
PctI	GAATGC	2 cut(s)	183, 967
PdiI	GCCGGC	2 cut(s)	58, 88
PfeI	GAWTC	4 cut(s)	535, 923, 1051, 1586
PflFI	GACNNNGTC	1 cut(s)	1422
PfoI	TCCNGGA	1 cut(s)	92
PleI	GAGTC	3 cut(s)	260, 703, 1228
PluTI	GGCGCC	1 cut(s)	1072
PpsI	GAGTC	3 cut(s)	260, 703, 1228
PscI	ACATGT	1 cut(s)	1401
Psp124BI	GAGCTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	1420
PspFI	CCCAGC	3 cut(s)	224, 1325, 1592
PspGI	CCWGG	1 cut(s)	1420
PspN4I	GGNNCC	4 cut(s)	91, 445, 1070, 1598
PspPI	GGNCC	4 cut(s)	66, 190, 394, 657
PstI	CTGCAG	1 cut(s)	1191
PstNI	CAGNNNCTG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	1109
PsyI	GACNNNGTC	1 cut(s)	1422
PvuII	CAGCTG	1 cut(s)	1592
RsaI	GTAC	5 cut(s)	167, 1000, 1172, 1261, 1578
RsaNI	GTAC	5 cut(s)	166, 999, 1171, 1260, 1577
RseI	CAYNNNNRTG	2 cut(s)	521, 1400
SacI	GAGCTC	1 cut(s)	512
SacII	CCGCGG	1 cut(s)	81
SapI	GCTCTTC	2 cut(s)	1308, 1378
SaqAI	TTAA	2 cut(s)	488, 1308
Sau3AI	GATC	5 cut(s)	779, 1090, 1109, 1125, 1194
Sau96I	GGNCC	4 cut(s)	66, 190, 394, 657
ScaI	AGTACT	4 cut(s)	1000, 1172, 1261, 1578
SchI	GAGTC	3 cut(s)	260, 703, 1229
ScrFI	CCNGG	6 cut(s)	94, 493, 1233, 1234, 1422, 1523
SduI	GDGCHC	5 cut(s)	381, 512, 545, 703, 1020
SexAI	ACCWGGT	1 cut(s)	1420
SfaNI	GCATC	1 cut(s)	1150
SfcI	CTRYAG	2 cut(s)	1187, 1449
SfoI	GGCGCC	1 cut(s)	1070
Sfr303I	CCGCGG	1 cut(s)	81
SgrAI	CRCCGGYG	1 cut(s)	56
SgrBI	CCGCGG	1 cut(s)	81
SinI	GGWCC	2 cut(s)	394, 657
SmaI	CCCGGG	1 cut(s)	1234
SmiMI	CAYNNNNRTG	2 cut(s)	521, 1400
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	8 cut(s)	127, 420, 547, 598, 742, 763, 1164, 1214
SsiI	CCGC	9 cut(s)	75, 78, 80, 84, 728, 736, 759, 1072, 1254
SspDI	GGCGCC	1 cut(s)	1068
SspMI	CTAG	2 cut(s)	1299, 1335
SstI	GAGCTC	1 cut(s)	512
StyD4I	CCNGG	6 cut(s)	92, 491, 1231, 1232, 1420, 1521
StyI	CCWWGG	5 cut(s)	397, 439, 1153, 1509, 1600
TaaI	ACNGT	1 cut(s)	1003
TaiI	ACGT	4 cut(s)	167, 204, 218, 1554
TaqI	TCGA	4 cut(s)	125, 312, 458, 900
TasI	AATT	8 cut(s)	127, 420, 547, 598, 742, 763, 1164, 1214
TatI	WGTACW	4 cut(s)	998, 1170, 1259, 1576
TauI	GCSGC	6 cut(s)	80, 83, 86, 731, 762, 1074
TfiI	GAWTC	4 cut(s)	535, 923, 1051, 1586
Tru1I	TTAA	2 cut(s)	488, 1308
Tru9I	TTAA	2 cut(s)	488, 1308
TseI	GCWGC	4 cut(s)	4, 250, 733, 1491
TspDTI	ATGAA	4 cut(s)	185, 482, 825, 1256
TspGWI	ACGGA	1 cut(s)	1102
TspMI	CCCGGG	1 cut(s)	1232
Tth111I	GACNNNGTC	1 cut(s)	1422
VpaK11BI	GGWCC	2 cut(s)	394, 657
XapI	RAATTY	2 cut(s)	127, 742
XceI	RCATGY	2 cut(s)	526, 1405
XcmI	CCANNNNNNNNNTGG	4 cut(s)	388, 446, 1054, 1406
XmaI	CCCGGG	1 cut(s)	1232
XspI	CTAG	2 cut(s)	1299, 1335
ZraI	GACGTC	2 cut(s)	202, 1552
ZrmI	AGTACT	4 cut(s)	1000, 1172, 1261, 1578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.