Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001985

Physical Location & Seq

Genomic Coordinates Forward (+)

61172050 .. 61173766

Gene Structure 1717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0494600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCAGCAGTTGTGGATTGTGATCAGCGTGAGAAGGAGCTGAAAGAATTCGACGAAAGCAAAGCTGGCGTCAAAGGACTTGCAGACGCTGGGGTGACCAAGCTCCCAAGCATGTTCGTACACCCTCCTGAGAATCTACTTAACTCGTCATTCCCACAAGATGATGAGCAATATCAGAAACTTCGCAACCTTCAACTTCCGGTGATTGATCTCAGCGGTTTTGATAACAGCGAGAGGCGAAAAGAAATCATCACAGACATAAACAAAGCAGCTGAGTCGTGGGGCTTCTTTCAGTTGGTGAACCATGGAATTCCTCTTGGTCTTATGGAGGGGATCCAGAAAAGTATCCGAGGGTTCCATGAGCTACCCCAGAAGGAGAAGGTGAAGTGGTACTCGCGCGATTTTACGCAGAAGGTTAGGTTCTTCAGCAATTTTGATTTGAAGGTGTCGACGCCAGCTGCCTGCTGGAGGGATACCTTGTCATGCAAGGTCCTGGAAGACCCAGAAAGCTTTGAAGCAATACCGCAAGTGTGCAGACGAGAAGTAAGTGAGTATATGAAACACATCGATGGAGTGCAAGAGAAGTTATCCGAGTTATTTTCGGAAGCTTTAGGTCTTAGTAGTGACTATCTTGCAAGCATAGGGTGCTTCAAATCGAGGTCATTGGCGTGCCACTATCACCCGATTTGCCCTGAACCCCATTTGACTATGGGCGGAGTCAAGCATTCAGACCTCCCCTTTCTCACCTTGCTCCTTCAAGACGGTGTTGGCGGCCTACAAGTTCTTCATCAAAATGTTTGGATTGATGTTCCCCCCATGAAGGGAGCTTTGGTAGCAAATATTGCTGACATGATGCAGGTTATTACAAATGGCAAGTTCAAGAGCGTGGAGCATAGAGTTTTGATGAAACCAACTGTAGAGCCTCGTATCTCAATTGCATGTTTTTTAAATACAGATGACCTCCAAAAACCATACGGGCCGATAAAAGAGCTTATATCGGAAAACAATCCACCGATTTATAGCGAAGTCAAATTCGGAGAACAGATAAAAAAATTATATAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

355

Amino Acids

40.14

Weight (kDa)

5.85

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	66 - 167	2e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	222 - 317	7.9e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12860 AT1G12860 AT1G12860 AT3G26744 AT3G26744 AT3G26744 AT3G26744 AT3G26744
fragaria_vesca	FvH4_5g09300 FvH4_5g09300
malus_domestica	MD06G1132200.v1.1 MD09G1003800.v1.1 MD14G1148600.v1.1 MD17G1007400.v1.1
prunus_persica	Prupe.3G312800_v2.0.a1 Prupe.3G312800_v2.0.a1 Prupe.5G143200_v2.0.a1
pyrus_communis	pycom06g12380 pycom111g00280 pycom14g12340 pycom17g00300
rosa_chinensis	RchiOBHm_Chr2g0176421 RchiOBHm_Chr7g0188921
rosa_laevigata	RLG00000004651 RLG00000022412
rosa_multiflora	Rmu_co8326225.1_g000001 Rmu_co8487291.1_g000001 Rmu_sc0009140.1_g000010 Rmu_sc0011904.1_g000015 Rmu_ssc0000113.1_g000008
rosa_roxburghii	Rroxscaffold_2G00076450 Rroxscaffold_3G00265940
rosa_rugosa	Rorug02G0594200 Rorug02G0594200 Rorug06G0494600
rosa_samantha	Rh2AG672700 Rh2BG684200 Rh2CG647000 Rh2DG697800 Rh7AG099500 Rh7BG101600 Rh7CG102900 Rh7DG101300
rosa_wichuraiana	Rw2G055180 Rw7G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1066
Acc36I	ACCTGC	1 cut(s)	847
AccI	GTMKAC	1 cut(s)	449
AccII	CGCG	2 cut(s)	397, 399
AciI	CCGC	4 cut(s)	216, 524, 714, 771
AclWI	GGATC	2 cut(s)	328, 341
AcsI	RAATTY	3 cut(s)	47, 309, 1031
AcuI	CTGAAG	1 cut(s)	409
AcyI	GRCGYC	2 cut(s)	69, 452
AfaI	GTAC	2 cut(s)	120, 392
AfiI	CCNNNNNNNGG	3 cut(s)	468, 820, 821
AgsI	TTSAA	6 cut(s)	194, 442, 515, 652, 758, 880
AjnI	CCWGG	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	812, 844
AlwI	GGATC	2 cut(s)	328, 341
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	2 cut(s)	772, 977
ApeKI	GCWGC	3 cut(s)	5, 269, 458
ApoI	RAATTY	3 cut(s)	47, 309, 1031
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	490, 977
AsuHPI	GGTGA	6 cut(s)	106, 214, 310, 394, 671, 736
AvaII	GGWCC	1 cut(s)	490
BamHI	GGATCC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	17, 281, 445
BccI	CCATC	1 cut(s)	563
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BciT130I	CCWGG	1 cut(s)	494
BciVI	GTATCC	2 cut(s)	356, 466
BclI	TGATCA	1 cut(s)	22
BfmI	CTRYAG	1 cut(s)	915
BfuAI	ACCTGC	1 cut(s)	847
BfuI	GTATCC	2 cut(s)	356, 466
BisI	GCNGC	4 cut(s)	6, 270, 459, 772
BlsI	GCNGC	4 cut(s)	7, 271, 460, 773
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	490, 977
BmiI	GGNNCC	2 cut(s)	335, 356
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	843
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	487
Bsa29I	ATCGAT	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	21
BsaHI	GRCGYC	2 cut(s)	69, 452
BsaJI	CCNNGG	2 cut(s)	304, 349
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	816, 846
Bsc4I	CCNNNNNNNGG	3 cut(s)	468, 820, 821
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	494
BseCI	ATCGAT	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	304, 349
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	3 cut(s)	468, 820, 821
BseMII	CTCAG	3 cut(s)	120, 226, 264
BseXI	GCAGC	3 cut(s)	17, 281, 445
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	553
Bsh1236I	CGCG	2 cut(s)	397, 399
BshFI	GGCC	2 cut(s)	774, 979
BshVI	ATCGAT	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	468, 820, 821
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	774, 979
Bsp143I	GATC	3 cut(s)	22, 208, 333
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	4 cut(s)	216, 524, 714, 771
BspANI	GGCC	2 cut(s)	774, 979
BspCNI	CTCAG	3 cut(s)	121, 225, 265
BspDI	ATCGAT	1 cut(s)	567
BspFNI	CGCG	2 cut(s)	397, 399
BspLI	GGNNCC	2 cut(s)	335, 356
BspMI	ACCTGC	1 cut(s)	847
BspPI	GGATC	2 cut(s)	328, 341
BssECI	CCNNGG	2 cut(s)	304, 349
BssMI	GATC	3 cut(s)	22, 208, 333
BssNI	GRCGYC	2 cut(s)	69, 452
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	764, 916
BstACI	GRCGYC	2 cut(s)	69, 452
BstAPI	GCANNNNNTGC	2 cut(s)	645, 842
BstC8I	GCNNGC	5 cut(s)	67, 456, 463, 637, 670
BstDEI	CTNAG	4 cut(s)	129, 212, 273, 617
BstDSI	CCRYGG	1 cut(s)	304
BstEII	GGTNACC	1 cut(s)	94
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstFNI	CGCG	2 cut(s)	397, 399
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	3 cut(s)	25, 211, 336
BstMBI	GATC	3 cut(s)	22, 208, 333
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 645, 833, 842
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	2 cut(s)	115, 942
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	1 cut(s)	915
BstUI	CGCG	2 cut(s)	397, 399
BstV1I	GCAGC	3 cut(s)	17, 281, 445
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	567
BsuI	GTATCC	2 cut(s)	356, 466
BsuRI	GGCC	2 cut(s)	774, 979
BsuTUI	ATCGAT	1 cut(s)	567
BtgI	CCRYGG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	847
Cac8I	GCNNGC	5 cut(s)	67, 456, 463, 637, 670
CaiI	CAGNNNCTG	1 cut(s)	89
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	490, 977
ClaI	ATCGAT	1 cut(s)	567
CseI	GACGC	3 cut(s)	58, 95, 460
Csp6I	GTAC	2 cut(s)	119, 391
CviAII	CATG	7 cut(s)	112, 305, 359, 483, 817, 850, 939
CviQI	GTAC	2 cut(s)	119, 391
DdeI	CTNAG	4 cut(s)	129, 212, 273, 617
DpnI	GATC	3 cut(s)	24, 210, 335
DpnII	GATC	3 cut(s)	22, 208, 333
DraI	TTTAAA	1 cut(s)	948
EciI	GGCGGA	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	409
Eco91I	GGTNACC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	94
EcoRI	GAATTC	2 cut(s)	47, 309
EcoRII	CCWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	7 cut(s)	115, 308, 362, 486, 820, 853, 942
FatI	CATG	7 cut(s)	111, 304, 358, 482, 816, 849, 938
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	449
Fnu4HI	GCNGC	4 cut(s)	6, 270, 459, 772
Fsp4HI	GCNGC	4 cut(s)	6, 270, 459, 772
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	4 cut(s)	6, 270, 459, 772
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	774, 979
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	3 cut(s)	58, 95, 460
HhaI	GCGC	1 cut(s)	399
Hin1I	GRCGYC	2 cut(s)	69, 452
Hin1II	CATG	7 cut(s)	115, 308, 362, 486, 820, 853, 942
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	2 cut(s)	508, 606
HinfI	GANTC	3 cut(s)	133, 275, 717
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	6 cut(s)	106, 214, 310, 394, 671, 736
Hpy166II	GTNNAC	3 cut(s)	121, 301, 450
Hpy188I	TCNGA	7 cut(s)	177, 350, 592, 604, 730, 1000, 1037
Hpy188III	TCNNGA	4 cut(s)	128, 337, 758, 880
Hpy8I	GTNNAC	3 cut(s)	121, 301, 450
Hpy99I	CGWCG	2 cut(s)	56, 454
HpyAV	CCTTC	8 cut(s)	28, 200, 367, 373, 406, 436, 764, 814
HpyCH4III	ACNGT	2 cut(s)	764, 916
HpyCH4V	TGCA	7 cut(s)	83, 486, 534, 577, 635, 856, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 645, 833, 842
HpyF3I	CTNAG	4 cut(s)	129, 212, 273, 617
Hsp92I	GRCGYC	2 cut(s)	69, 452
Hsp92II	CATG	7 cut(s)	115, 308, 362, 486, 820, 853, 942
HspAI	GCGC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	22, 208, 333
LmnI	GCTCC	5 cut(s)	37, 108, 756, 824, 889
Lsp1109I	GCAGC	3 cut(s)	17, 281, 445
LweI	GCATC	1 cut(s)	843
MaeIII	GTNAC	2 cut(s)	94, 623
MalI	GATC	3 cut(s)	24, 210, 335
MboI	GATC	3 cut(s)	22, 208, 333
MboII	GAAGA	3 cut(s)	415, 509, 776
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	1 cut(s)	333
MluCI	AATT	7 cut(s)	47, 309, 430, 933, 1031, 1052, 1060
MlyI	GAGTC	2 cut(s)	284, 726
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	2 cut(s)	141, 947
MslI	CAYNNNNRTG	3 cut(s)	567, 667, 792
MspA1I	CMGCKG	3 cut(s)	216, 272, 458
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	933
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	1 cut(s)	494
MvnI	CGCG	2 cut(s)	397, 399
MwoI	GCNNNNNNNGC	4 cut(s)	66, 645, 833, 842
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	22, 208, 333
NlaIII	CATG	7 cut(s)	115, 308, 362, 486, 820, 853, 942
NlaIV	GGNNCC	2 cut(s)	335, 356
NmuCI	GTSAC	2 cut(s)	94, 623
NspI	RCATGY	2 cut(s)	115, 942
PctI	GAATGC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	133
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	4 cut(s)	7, 271, 460, 773
PleI	GAGTC	2 cut(s)	283, 725
PpsI	GAGTC	2 cut(s)	283, 725
PpuMI	RGGWCCY	1 cut(s)	490
PsiI	TTATAA	1 cut(s)	1066
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	492
PspEI	GGTNACC	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	335, 356
PspPI	GGNCC	2 cut(s)	490, 977
PspPPI	RGGWCCY	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	333
PvuII	CAGCTG	2 cut(s)	272, 458
RsaI	GTAC	2 cut(s)	120, 392
RsaNI	GTAC	2 cut(s)	119, 391
RseI	CAYNNNNRTG	3 cut(s)	567, 667, 792
SalI	GTCGAC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	141, 947
SatI	GCNGC	4 cut(s)	6, 270, 459, 772
Sau3AI	GATC	3 cut(s)	22, 208, 333
Sau96I	GGNCC	2 cut(s)	490, 977
SchI	GAGTC	2 cut(s)	284, 726
ScrFI	CCNGG	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	843
SfcI	CTRYAG	1 cut(s)	915
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	3 cut(s)	567, 667, 792
Sse9I	AATT	7 cut(s)	47, 309, 430, 933, 1031, 1052, 1060
SsiI	CCGC	4 cut(s)	216, 524, 714, 771
SspI	AATATT	1 cut(s)	841
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	764, 916
TaqI	TCGA	4 cut(s)	51, 449, 567, 656
TasI	AATT	7 cut(s)	47, 309, 430, 933, 1031, 1052, 1060
TauI	GCSGC	1 cut(s)	774
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	141, 947
Tru9I	TTAA	2 cut(s)	141, 947
TseFI	GTSAC	2 cut(s)	94, 623
TseI	GCWGC	3 cut(s)	5, 269, 458
Tsp45I	GTSAC	2 cut(s)	94, 623
TspDTI	ATGAA	4 cut(s)	572, 776, 833, 920
VpaK11BI	GGWCC	1 cut(s)	490
XagI	CCTNNNNNAGG	1 cut(s)	466
XapI	RAATTY	3 cut(s)	47, 309, 1031
XceI	RCATGY	2 cut(s)	115, 942
XcmI	CCANNNNNNNNNTGG	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.