Rmu_co8487291.1_g000001

helix loop helix domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8487291.1
Physical Location & Seq
Reverse (-)
119 .. 2378
2260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8487291.1_g000001.1.cds

Sequence Viewer

Length: 1491 bp
atgtccagcggcggcgtttggatgaacagagagggagaagacgcagtttcttcttggaccagcaacccccataacaacaatgaaacagagcccaaagacctgaccctggccagcttcaaagccatgttagaaggtgactggtacttgaacaacaacaacaacaacgtcgtcgtcctcaaccaagacaacattaactgcttctcttccaacccctttcaaatggacacctccgcttcttgctctccgtccatggcatttactcttttaaattcaaatcccaatcccaactccaaatcctgcttctcttctctaggaaactctaatccattcgataacaatttcaattcggttggcgaaagtgagctcttgacccagcttcagcagcaaaatgaagctttgatgaacttggcagctcttaatcctcactcccaggtggctgctactcctgcactcagttccggcaccgagttcccctcgaatcagctgcttccagcttccggcaacaccgccggtgtctttagcaacgccggcttcgaaagctccgggagtgctctgttactgaacagggctgaggatatgagtttcccttgttccatgggtggtgcacagcccactctgtatcagaagcgagctgcacttcgccagaactccactggcagcagcggctgcgatatattgggcaacttggagatttcggggcccagttactccggcttgggtttggaggagaaaaggaagaggagacataatgagagcgaaatggaagacgatatgtctagtttgaatttttatgattctgatggtcaagcggaggaggaggaggaggggaatgtgaataatgccgctggtggaggctattctaatgccaatagtagtgtcactgatggagatttcaaggggaagaagacgggtttaccggccaaaaatctcatggccgaaaggcgccggaggaagaagctcaacgacaggctctacatgcttaggtctgtagtacccaagataagcaagatggatagggcgtccatacttggggatgcaattgactatttgagagagcttctgggaaggattgatgacctccataaggagctggaatcagatgcacctggctcttctttgcaaccttcaacaaattttaacccattgacaccaaattcactcacctatcccggccgtatcaaggaggagctccgtcctagctccttgccaacccctaaaagccaacaacctgctgcaaaggtggatgttcagataagggaaggacgagctcttaacatccgcatgttatctccacgcagaccaggtctgttgctctctactatgagagccttggacaaccttgggttagacatccagcaggctgtgatcagctgctttaatggatttgctctggatgtgttccaagctgagcaatccagggaaagccatttcttgcctgagcaaattagagcgatactcttgaaatcagctggatttgatggtatgatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

496

Amino Acids

53.99

Weight (kDa)

5.07

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1237
AccB1I GGYRCC 2 cut(s) 461, 942
AciI CCGC 8 cut(s) 9, 12, 231, 507, 663, 809, 843, 1279
AcoI YGGCCR 4 cut(s) 108, 918, 933, 1171
AcsI RAATTY 4 cut(s) 268, 784, 1132, 1153
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 2 cut(s) 943, 1019
AfaI GTAC 2 cut(s) 143, 993
AfiI CCNNNNNNNGG 5 cut(s) 106, 497, 1029, 1084, 1180
AgsI TTSAA 9 cut(s) 118, 148, 218, 273, 343, 784, 895, 1128, 1462
AhdI GACNNNNNGTC 1 cut(s) 772
AjnI CCWGG 5 cut(s) 105, 429, 1105, 1300, 1415
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
Alw21I GWGCWC 5 cut(s) 366, 553, 607, 1191, 1270
Alw26I GTCTC 1 cut(s) 736
Alw44I GTGCAC 1 cut(s) 603
AlwNI CAGNNNCTG 1 cut(s) 666
AoxI GGCC 5 cut(s) 108, 698, 918, 933, 1171
ApaI GGGCCC 1 cut(s) 702
ApaLI GTGCAC 1 cut(s) 603
ApoI RAATTY 4 cut(s) 268, 784, 1132, 1153
AspLEI GCGC 1 cut(s) 945
AspS9I GGNCC 3 cut(s) 57, 698, 699
AsuC2I CCSGG 2 cut(s) 544, 1170
AsuHPI GGTGA 2 cut(s) 146, 1153
AsuII TTCGAA 1 cut(s) 534
AvaII GGWCC 1 cut(s) 57
BaeGI GKGCMC 2 cut(s) 607, 702
BalI TGGCCA 1 cut(s) 110
BanI GGYRCC 2 cut(s) 461, 942
BanII GRGCYC 5 cut(s) 93, 366, 702, 1191, 1270
BbsI GAAGAC 3 cut(s) 45, 771, 911
Bbv12I GWGCWC 5 cut(s) 366, 553, 607, 1191, 1270
BbvCI CCTCAGC 1 cut(s) 570
BccI CCATC 4 cut(s) 794, 878, 1003, 1472
BceAI ACGGC 1 cut(s) 1158
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BciT130I CCWGG 5 cut(s) 107, 431, 1107, 1302, 1417
BclI TGATCA 1 cut(s) 1365
BcnI CCSGG 2 cut(s) 544, 1170
BcoDI GTCTC 1 cut(s) 736
BfaI CTAG 3 cut(s) 311, 777, 1197
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 946
BfuAI ACCTGC 1 cut(s) 1237
BlpI GCTNAGC 1 cut(s) 1407
Bme1390I CCNGG 7 cut(s) 107, 431, 544, 1107, 1170, 1302, 1417
Bme18I GGWCC 1 cut(s) 57
BmeRI GACNNNNNGTC 1 cut(s) 772
BmgT120I GGNCC 3 cut(s) 57, 698, 699
BmiI GGNNCC 4 cut(s) 463, 699, 700, 944
BmrFI CCNGG 7 cut(s) 107, 431, 544, 1107, 1170, 1302, 1417
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 2 cut(s) 1024, 1090
BmuI ACTGGG 1 cut(s) 696
BpiI GAAGAC 3 cut(s) 45, 771, 911
BplI GAGNNNNNCTC 4 cut(s) 458, 490, 1440, 1472
Bpu10I CCTNAGC 3 cut(s) 570, 980, 1437
Bpu1102I GCTNAGC 1 cut(s) 1407
Bpu14I TTCGAA 1 cut(s) 534
BpuMI CCSGG 2 cut(s) 544, 1170
BsaHI GRCGYC 2 cut(s) 943, 1019
BsaJI CCNNGG 7 cut(s) 105, 249, 429, 594, 1329, 1339, 1416
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 497, 1029, 1084, 1180
Bse118I RCCGGY 3 cut(s) 509, 527, 916
Bse1I ACTGG 3 cut(s) 143, 658, 702
BseBI CCWGG 5 cut(s) 107, 431, 1107, 1302, 1417
BseDI CCNNGG 7 cut(s) 105, 249, 429, 594, 1329, 1339, 1416
BseGI GGATG 6 cut(s) 27, 1039, 1249, 1275, 1350, 1399
BseLI CCNNNNNNNGG 5 cut(s) 106, 497, 1029, 1084, 1180
BseMII CTCAG 4 cut(s) 466, 561, 1398, 1428
BseNI ACTGG 3 cut(s) 143, 658, 702
BseRI GAGGAG 7 cut(s) 740, 754, 827, 830, 833, 836, 1199
BseSI GKGCMC 2 cut(s) 607, 702
BseX3I CGGCCG 1 cut(s) 1171
BseYI CCCAGC 1 cut(s) 372
BsgI GTGCAG 2 cut(s) 432, 618
Bsh1285I CGRYCG 1 cut(s) 1174
BshFI GGCC 5 cut(s) 110, 700, 920, 935, 1173
BshNI GGYRCC 2 cut(s) 461, 942
BsiEI CGRYCG 1 cut(s) 1174
BsiHKAI GWGCWC 5 cut(s) 366, 553, 607, 1191, 1270
BsiSI CCGG 9 cut(s) 459, 498, 510, 528, 543, 711, 917, 946, 1170
BslI CCNNNNNNNGG 5 cut(s) 106, 497, 1029, 1084, 1180
BsmAI GTCTC 1 cut(s) 736
BsnI GGCC 5 cut(s) 110, 700, 920, 935, 1173
Bsp119I TTCGAA 1 cut(s) 534
Bsp120I GGGCCC 1 cut(s) 698
Bsp1286I GDGCHC 7 cut(s) 93, 366, 553, 607, 702, 1191, 1270
Bsp143I GATC 1 cut(s) 1365
Bsp1720I GCTNAGC 1 cut(s) 1407
Bsp19I CCATGG 2 cut(s) 249, 594
BspACI CCGC 8 cut(s) 9, 12, 231, 507, 663, 809, 843, 1279
BspANI GGCC 5 cut(s) 110, 700, 920, 935, 1173
BspCNI CTCAG 4 cut(s) 465, 562, 1399, 1429
BspLI GGNNCC 4 cut(s) 463, 699, 700, 944
BspMI ACCTGC 1 cut(s) 1237
BspQI GCTCTTC 1 cut(s) 1117
BspT104I TTCGAA 1 cut(s) 534
BspT107I GGYRCC 2 cut(s) 461, 942
BsrFI RCCGGY 3 cut(s) 509, 527, 916
BsrI ACTGG 3 cut(s) 143, 658, 702
BssAI RCCGGY 3 cut(s) 509, 527, 916
BssECI CCNNGG 7 cut(s) 105, 249, 429, 594, 1329, 1339, 1416
BssMI GATC 1 cut(s) 1365
BssNI GRCGYC 2 cut(s) 943, 1019
BssT1I CCWWGG 4 cut(s) 249, 594, 1329, 1339
Bst2UI CCWGG 5 cut(s) 107, 431, 1107, 1302, 1417
Bst6I CTCTTC 4 cut(s) 208, 310, 731, 1117
BstACI GRCGYC 2 cut(s) 943, 1019
BstAPI GCANNNNNTGC 1 cut(s) 666
BstBI TTCGAA 1 cut(s) 534
BstC8I GCNNGC 4 cut(s) 112, 529, 630, 1359
BstDEI CTNAG 5 cut(s) 452, 570, 980, 1407, 1437
BstDSI CCRYGG 2 cut(s) 249, 594
BstENI CCTNNNNNAGG 1 cut(s) 1082
BstF5I GGATG 6 cut(s) 27, 1039, 1249, 1275, 1350, 1399
BstH2I RGCGCY 1 cut(s) 946
BstHHI GCGC 1 cut(s) 945
BstKTI GATC 1 cut(s) 1368
BstMAI GTCTC 1 cut(s) 736
BstMBI GATC 1 cut(s) 1365
BstMCI CGRYCG 1 cut(s) 1174
BstMWI GCNNNNNNNGC 7 cut(s) 382, 446, 528, 537, 663, 666, 976
BstNI CCWGG 5 cut(s) 107, 431, 1107, 1302, 1417
BstNSI RCATGY 2 cut(s) 979, 1285
BstSCI CCNGG 7 cut(s) 105, 429, 542, 1105, 1168, 1300, 1415
BstSFI CTRYAG 1 cut(s) 987
BstSLI GKGCMC 2 cut(s) 607, 702
BstV2I GAAGAC 3 cut(s) 45, 771, 911
BstZI CGGCCG 1 cut(s) 1171
BsuRI GGCC 5 cut(s) 110, 700, 920, 935, 1173
BtgI CCRYGG 2 cut(s) 249, 594
BtsCI GGATG 6 cut(s) 27, 1039, 1249, 1275, 1350, 1399
BtsIMutI CAGTG 2 cut(s) 651, 879
BveI ACCTGC 1 cut(s) 1237
Cac8I GCNNGC 4 cut(s) 112, 529, 630, 1359
CaiI CAGNNNCTG 1 cut(s) 666
CfoI GCGC 1 cut(s) 945
Cfr10I RCCGGY 3 cut(s) 509, 527, 916
Cfr13I GGNCC 3 cut(s) 57, 698, 699
CseI GACGC 2 cut(s) 50, 1008
CsiI ACCWGGT 1 cut(s) 1300
Csp6I GTAC 2 cut(s) 142, 992
CviAII CATG 6 cut(s) 124, 250, 595, 931, 976, 1282
CviQI GTAC 2 cut(s) 142, 992
DdeI CTNAG 5 cut(s) 452, 570, 980, 1407, 1437
DinI GGCGCC 1 cut(s) 944
DpnI GATC 1 cut(s) 1367
DpnII GATC 1 cut(s) 1365
DraI TTTAAA 1 cut(s) 267
DriI GACNNNNNGTC 1 cut(s) 772
EaeI YGGCCR 4 cut(s) 108, 918, 933, 1171
EagI CGGCCG 1 cut(s) 1171
Eam1104I CTCTTC 4 cut(s) 208, 310, 731, 1117
Eam1105I GACNNNNNGTC 1 cut(s) 772
EarI CTCTTC 4 cut(s) 208, 310, 731, 1117
Ecl136II GAGCTC 3 cut(s) 364, 1189, 1268
EclXI CGGCCG 1 cut(s) 1171
Eco130I CCWWGG 4 cut(s) 249, 594, 1329, 1339
Eco24I GRGCYC 5 cut(s) 93, 366, 702, 1191, 1270
Eco47I GGWCC 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 1171
Eco53kI GAGCTC 3 cut(s) 364, 1189, 1268
Eco57I CTGAAG 1 cut(s) 362
EcoICRI GAGCTC 3 cut(s) 364, 1189, 1268
EcoNI CCTNNNNNAGG 1 cut(s) 1082
EcoO109I RGGNCCY 1 cut(s) 698
EcoRII CCWGG 5 cut(s) 105, 429, 1105, 1300, 1415
EcoT14I CCWWGG 4 cut(s) 249, 594, 1329, 1339
EcoT38I GRGCYC 5 cut(s) 93, 366, 702, 1191, 1270
EgeI GGCGCC 1 cut(s) 944
EheI GGCGCC 1 cut(s) 944
ErhI CCWWGG 4 cut(s) 249, 594, 1329, 1339
FaeI CATG 6 cut(s) 127, 253, 598, 934, 979, 1285
FatI CATG 6 cut(s) 123, 249, 594, 930, 975, 1281
FbaI TGATCA 1 cut(s) 1365
FokI GGATG 6 cut(s) 34, 1046, 1256, 1262, 1337, 1406
FriOI GRGCYC 5 cut(s) 93, 366, 702, 1191, 1270
FspBI CTAG 3 cut(s) 311, 777, 1197
GlaI GCGC 1 cut(s) 944
GsaI CCCAGC 1 cut(s) 376
HaeII RGCGCY 1 cut(s) 946
HaeIII GGCC 5 cut(s) 110, 700, 920, 935, 1173
HapII CCGG 9 cut(s) 459, 498, 510, 528, 543, 711, 917, 946, 1170
HgaI GACGC 2 cut(s) 50, 1008
HhaI GCGC 1 cut(s) 945
Hin1I GRCGYC 2 cut(s) 943, 1019
Hin1II CATG 6 cut(s) 127, 253, 598, 934, 979, 1285
Hin6I GCGC 1 cut(s) 943
HinP1I GCGC 1 cut(s) 943
HindIII AAGCTT 1 cut(s) 393
HinfI GANTC 3 cut(s) 478, 794, 1094
HpaII CCGG 9 cut(s) 459, 498, 510, 528, 543, 711, 917, 946, 1170
HphI GGTGA 2 cut(s) 146, 1153
Hpy166II GTNNAC 2 cut(s) 605, 914
Hpy188I TCNGA 4 cut(s) 624, 799, 1099, 1251
Hpy188III TCNNGA 3 cut(s) 367, 1391, 1459
Hpy8I GTNNAC 2 cut(s) 605, 914
Hpy99I CGWCG 2 cut(s) 170, 173
HpyAV CCTTC 4 cut(s) 125, 1059, 1134, 1253
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 7 cut(s) 449, 605, 635, 1037, 1103, 1120, 1235
HpyF10VI GCNNNNNNNGC 7 cut(s) 382, 446, 528, 537, 663, 666, 976
HpyF3I CTNAG 5 cut(s) 452, 570, 980, 1407, 1437
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 2 cut(s) 943, 1019
Hsp92II CATG 6 cut(s) 127, 253, 598, 934, 979, 1285
HspAI GCGC 1 cut(s) 943
KasI GGCGCC 1 cut(s) 942
KroI GCCGGC 1 cut(s) 527
KroNI GCCGGC 1 cut(s) 529
Ksp22I TGATCA 1 cut(s) 1365
Kzo9I GATC 1 cut(s) 1365
LguI GCTCTTC 1 cut(s) 1117
LmnI GCTCC 5 cut(s) 545, 1087, 1186, 1194, 1205
LweI GCATC 2 cut(s) 1024, 1090
MabI ACCWGGT 1 cut(s) 1300
MaeI CTAG 3 cut(s) 311, 777, 1197
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 4 cut(s) 134, 555, 704, 877
MalI GATC 1 cut(s) 1367
MboI GATC 1 cut(s) 1365
MfeI CAATTG 1 cut(s) 1038
MhlI GDGCHC 7 cut(s) 93, 366, 553, 607, 702, 1191, 1270
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 8 cut(s) 268, 337, 343, 784, 1038, 1132, 1153, 1443
MluNI TGGCCA 1 cut(s) 110
Mly113I GGCGCC 1 cut(s) 943
MmeI TCCRAC 1 cut(s) 231
Mox20I TGGCCA 1 cut(s) 110
MroNI GCCGGC 1 cut(s) 527
MscI TGGCCA 1 cut(s) 110
MseI TTAA 6 cut(s) 192, 266, 417, 1137, 1272, 1377
MslI CAYNNNNRTG 1 cut(s) 1280
Msp20I TGGCCA 1 cut(s) 110
MspA1I CMGCKG 6 cut(s) 9, 484, 663, 845, 1371, 1469
MspI CCGG 9 cut(s) 459, 498, 510, 528, 543, 711, 917, 946, 1170
MspR9I CCNGG 7 cut(s) 107, 431, 544, 1107, 1170, 1302, 1417
MunI CAATTG 1 cut(s) 1038
MvaI CCWGG 5 cut(s) 107, 431, 1107, 1302, 1417
MwoI GCNNNNNNNGC 7 cut(s) 382, 446, 528, 537, 663, 666, 976
NaeI GCCGGC 1 cut(s) 529
NarI GGCGCC 1 cut(s) 943
NciI CCSGG 2 cut(s) 544, 1170
NcoI CCATGG 2 cut(s) 249, 594
NdeII GATC 1 cut(s) 1365
NgoMIV GCCGGC 1 cut(s) 527
NlaIII CATG 6 cut(s) 127, 253, 598, 934, 979, 1285
NlaIV GGNNCC 4 cut(s) 463, 699, 700, 944
NmuCI GTSAC 2 cut(s) 134, 877
NspI RCATGY 2 cut(s) 979, 1285
NspV TTCGAA 1 cut(s) 534
PciSI GCTCTTC 1 cut(s) 1117
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PdiI GCCGGC 1 cut(s) 529
PfeI GAWTC 3 cut(s) 478, 794, 1094
PflFI GACNNNGTC 1 cut(s) 1302
PfoI TCCNGGA 1 cut(s) 542
PluTI GGCGCC 1 cut(s) 946
Psp124BI GAGCTC 3 cut(s) 366, 1191, 1270
Psp6I CCWGG 5 cut(s) 105, 429, 1105, 1300, 1415
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 5 cut(s) 105, 429, 1105, 1300, 1415
PspN4I GGNNCC 4 cut(s) 463, 699, 700, 944
PspOMI GGGCCC 1 cut(s) 698
PspPI GGNCC 3 cut(s) 57, 698, 699
PstNI CAGNNNCTG 1 cut(s) 666
PsyI GACNNNGTC 1 cut(s) 1302
PvuII CAGCTG 3 cut(s) 484, 1371, 1469
RsaI GTAC 2 cut(s) 143, 993
RsaNI GTAC 2 cut(s) 142, 992
RseI CAYNNNNRTG 1 cut(s) 1280
SacI GAGCTC 3 cut(s) 366, 1191, 1270
SapI GCTCTTC 1 cut(s) 1117
SaqAI TTAA 6 cut(s) 192, 266, 417, 1137, 1272, 1377
Sau3AI GATC 1 cut(s) 1365
Sau96I GGNCC 3 cut(s) 57, 698, 699
ScrFI CCNGG 7 cut(s) 107, 431, 544, 1107, 1170, 1302, 1417
SduI GDGCHC 7 cut(s) 93, 366, 553, 607, 702, 1191, 1270
SexAI ACCWGGT 1 cut(s) 1300
SfaNI GCATC 2 cut(s) 1024, 1090
SfcI CTRYAG 1 cut(s) 987
SfoI GGCGCC 1 cut(s) 944
SfuI TTCGAA 1 cut(s) 534
SgrAI CRCCGGYG 1 cut(s) 509
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 1280
Sse9I AATT 8 cut(s) 268, 337, 343, 784, 1038, 1132, 1153, 1443
SsiI CCGC 8 cut(s) 9, 12, 231, 507, 663, 809, 843, 1279
SspDI GGCGCC 1 cut(s) 942
SspMI CTAG 3 cut(s) 311, 777, 1197
SstI GAGCTC 3 cut(s) 366, 1191, 1270
StyD4I CCNGG 7 cut(s) 105, 429, 542, 1105, 1168, 1300, 1415
StyI CCWWGG 4 cut(s) 249, 594, 1329, 1339
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 330, 476, 534
TasI AATT 8 cut(s) 268, 337, 343, 784, 1038, 1132, 1153, 1443
TauI GCSGC 4 cut(s) 12, 15, 666, 845
TfiI GAWTC 3 cut(s) 478, 794, 1094
Tru1I TTAA 6 cut(s) 192, 266, 417, 1137, 1272, 1377
Tru9I TTAA 6 cut(s) 192, 266, 417, 1137, 1272, 1377
TscAI CASTG 2 cut(s) 658, 886
TseFI GTSAC 2 cut(s) 134, 877
Tsp45I GTSAC 2 cut(s) 134, 877
TspDTI ATGAA 4 cut(s) 38, 96, 405, 416
TspGWI ACGGA 2 cut(s) 234, 1181
TspRI CASTG 2 cut(s) 658, 886
Tth111I GACNNNGTC 1 cut(s) 1302
VneI GTGCAC 1 cut(s) 603
VpaK11BI GGWCC 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 1082
XapI RAATTY 4 cut(s) 268, 784, 1132, 1153
XceI RCATGY 2 cut(s) 979, 1285
XcmI CCANNNNNNNNNTGG 2 cut(s) 650, 928
XspI CTAG 3 cut(s) 311, 777, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.