Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001985

Physical Location & Seq

Genomic Coordinates Reverse (-)

7775251 .. 7778004

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGCTGCCGAGGCTCAATGGGGTTGTTTGGATGGAGGAGAGGGAGGACAGAGACGCCGGCGAGTGGGCCAGAACCGCCGCGGCCGCCGGCGCCGGGAACAGCAAGGACGAGATGGGTTCTCTGTCGAATTTCAAATCCATGCTGGAGGTTGAAGATGAGTGGACGTACATGAACAACAATGGCATTCAGGGCCATTCTGACGTCAGAGACTTGACGTTCTCGCCCAGCTTTGCTGACCCAGAAAGCTTGCTGCTCAACCAAGTGGACTCTTCGTCTTCTTGTTCTCCATCTTCCTCTGTTTTCAACAACCTCGACCCGTCTCAGGTTCACTACTACCTGCCTCAGAACCCATCATTGTCTTCTCTGCTCAATGCTGTGCCTAACAACCCTCTGGACCATGGCTTTGATTTGGGCTGTGAAATTGGGTTTCTTGACAACCAAGGCTCCGGTGGTGGTTCGAGTTTGATGAACAGGGGAGGTGGGGTTTTAACCGGGTTCAATGATTTGAGCTCCAACACCCACATGCAGGCTCAGAATCTGTGCTCCAATTTGCAATTCTCAACCACCCGTTTGCCTCATTTGCTTGAGAATGGTAATAATTTTTCGGGTTTTCGGGGTGTTGATGATACTTCAGGCAATGCTTTGTTTAGCAATAGGTCTAAAATGTTGAGACCCCTTCAGCCCTTATCTTCTGTGGGAGCACAGCCGACTCTTTTTCAGAAAAGGGCGGCGCTGCGGAAGAATTTGGGTGGACTGGGATCGGAGGGGGGACTGGTCTTGAGTAACTATGAAGGGGATAAGGGGAAGAGGGACATGGGGGAAGAGAATGAGAAGAAGAGGAAGTTTAGTGGTGGAGATGATGGCGAAGATTTGAGTTTCGATGGCTCGGGTTTGAACTATGATTCAGATGAGTTTACTGAGAATACTAAGATGGATGAGAATGCCAAGAATGGTGGGAATAGCTCCAATGCTAATAGTACTGTTACTGGTGGTGAGCACAAGGGGAAGAAGAAAGGGTTGCCTGCTAAGAATCTGATGGCTGAGAGGCGCCGCCGGAAGAAGCTCAATGATCGGCTGTATATGCTGAGATCCGTTGTTCCGAAGATCAGCAAAATGGATAGGGCTTCTATCCTTGGGGATGCAATTGAGTACTTGAAAGAACTTCTGCAGAGGATCAACAACCTCCATAACGAATTGGAGTCGCTCCCTCCCGGGTCTGCATTGACACCTACCGCAAGTACTTTTCATCCTTTGACACCCACTCCACCTACTCTGCCTAGCCGTATTAAGGAAGAGCTTTGCCCCAGCTTACCTAGCCCGAATGGCCAACCTGCAAGGGTTGAAGTAAGGCTACGAGAAGGCAGAGCTGTGAACATCCACATGTTCTGTGGCAGAAGACCTGGTCTCTTGCTCTCCACTATGAGGGCTGTAGATAATCTTGGTTTAGACATCCAGCAAGCTGTCATTAGCTGCTTCAATGGGTTTGCCATGGATATATTCCGGGCTGAGCAATGCAAGGAAGGTCAAGACGTCCACCCTGAGCATATAAAGGCAGTACTTTTGGATTCAGCTGGGTTCCATGGCATGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

530

Amino Acids

57.73

Weight (kDa)

5.81

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	345 - 394	2.5e-07	Transcription factor SAC51 bHLH domain
HLH	PF00010	346 - 388	2.5e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	447 - 520	1.7e-11	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12860 AT1G12860 AT1G12860 AT3G26744 AT3G26744 AT3G26744 AT3G26744 AT3G26744
fragaria_vesca	FvH4_5g09300 FvH4_5g09300
malus_domestica	MD06G1132200.v1.1 MD09G1003800.v1.1 MD14G1148600.v1.1 MD17G1007400.v1.1
prunus_persica	Prupe.3G312800_v2.0.a1 Prupe.3G312800_v2.0.a1 Prupe.5G143200_v2.0.a1
pyrus_communis	pycom06g12380 pycom111g00280 pycom14g12340 pycom17g00300
rosa_chinensis	RchiOBHm_Chr2g0176421 RchiOBHm_Chr7g0188921
rosa_laevigata	RLG00000004651 RLG00000022412
rosa_multiflora	Rmu_co8326225.1_g000001 Rmu_co8487291.1_g000001 Rmu_sc0009140.1_g000010 Rmu_sc0011904.1_g000015 Rmu_ssc0000113.1_g000008
rosa_roxburghii	Rroxscaffold_2G00076450 Rroxscaffold_3G00265940
rosa_rugosa	Rorug02G0594200 Rorug02G0594200 Rorug06G0494600
rosa_samantha	Rh2AG672700 Rh2BG684200 Rh2CG647000 Rh2DG697800 Rh7AG099500 Rh7BG101600 Rh7CG102900 Rh7DG101300
rosa_wichuraiana	Rw2G055180 Rw7G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	204, 1533
Acc36I	ACCTGC	2 cut(s)	345, 1339
AccB1I	GGYRCC	2 cut(s)	89, 1047
AccII	CGCG	1 cut(s)	80
AciI	CCGC	8 cut(s)	75, 78, 80, 84, 728, 736, 1051, 1233
AclWI	GGATC	3 cut(s)	766, 1083, 1181
AcoI	YGGCCR	2 cut(s)	81, 1324
AcsI	RAATTY	2 cut(s)	127, 742
AcuI	CTGAAG	2 cut(s)	615, 662
AcyI	GRCGYC	5 cut(s)	54, 90, 201, 1048, 1530
AfaI	GTAC	5 cut(s)	167, 979, 1151, 1240, 1557
AfiI	CCNNNNNNNGG	6 cut(s)	63, 93, 322, 526, 1288, 1422
AflIII	ACRYGT	1 cut(s)	1380
AgsI	TTSAA	8 cut(s)	133, 152, 304, 499, 895, 1156, 1343, 1477
AhdI	GACNNNNNGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	1399
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
Alw21I	GWGCWC	4 cut(s)	512, 545, 703, 999
Alw26I	GTCTC	5 cut(s)	45, 201, 324, 664, 1409
AlwI	GGATC	3 cut(s)	766, 1083, 1181
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	2 cut(s)	886, 1211
AoxI	GGCC	4 cut(s)	66, 81, 190, 1324
ApeKI	GCWGC	4 cut(s)	4, 250, 733, 1470
ApoI	RAATTY	2 cut(s)	127, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AspLEI	GCGC	3 cut(s)	92, 733, 1050
AspS9I	GGNCC	3 cut(s)	66, 190, 394
AsuC2I	CCSGG	5 cut(s)	94, 493, 1212, 1213, 1502
AsuHPI	GGTGA	1 cut(s)	1004
AvaI	CYCGRG	2 cut(s)	886, 1211
AvaII	GGWCC	1 cut(s)	394
BalI	TGGCCA	1 cut(s)	1326
BanI	GGYRCC	2 cut(s)	89, 1047
BanII	GRGCYC	1 cut(s)	512
BarI	GAAGNNNNNNTAC	2 cut(s)	1335, 1367
BbsI	GAAGAC	3 cut(s)	267, 351, 1402
Bbv12I	GWGCWC	4 cut(s)	512, 545, 703, 999
BbvI	GCAGC	3 cut(s)	237, 720, 1457
BccI	CCATC	8 cut(s)	25, 106, 295, 358, 854, 875, 925, 1030
BceAI	ACGGC	1 cut(s)	1266
BciT130I	CCWGG	1 cut(s)	1401
BcnI	CCSGG	5 cut(s)	94, 493, 1212, 1213, 1502
BcoDI	GTCTC	5 cut(s)	45, 201, 324, 664, 1409
BfaI	CTAG	2 cut(s)	1278, 1314
BfmI	CTRYAG	2 cut(s)	1166, 1428
BfoI	RGCGCY	3 cut(s)	93, 734, 1051
BfuAI	ACCTGC	2 cut(s)	345, 1339
BglI	GCCNNNNNGGC	1 cut(s)	1323
BisI	GCNGC	9 cut(s)	5, 78, 81, 84, 251, 729, 734, 1051, 1471
BlpI	GCTNAGC	1 cut(s)	1506
BlsI	GCNGC	9 cut(s)	6, 79, 82, 85, 252, 730, 735, 1052, 1472
BmcAI	AGTACT	4 cut(s)	979, 1151, 1240, 1557
Bme1390I	CCNGG	6 cut(s)	94, 493, 1212, 1213, 1401, 1502
Bme18I	GGWCC	1 cut(s)	394
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmeT110I	CYCGRG	2 cut(s)	886, 1211
BmgT120I	GGNCC	3 cut(s)	66, 190, 394
BmiI	GGNNCC	4 cut(s)	91, 445, 1049, 1577
BmrFI	CCNGG	6 cut(s)	94, 493, 1212, 1213, 1401, 1502
BmrI	ACTGGG	1 cut(s)	764
BmsI	GCATC	1 cut(s)	1129
BmuI	ACTGGG	1 cut(s)	764
BpiI	GAAGAC	3 cut(s)	267, 351, 1402
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	1539
Bpu1102I	GCTNAGC	1 cut(s)	1506
BpuEI	CTTGAG	2 cut(s)	605, 799
BpuMI	CCSGG	5 cut(s)	94, 493, 1212, 1213, 1502
BsaHI	GRCGYC	5 cut(s)	54, 90, 201, 1048, 1530
BsaI	GGTCTC	2 cut(s)	664, 1409
BsaJI	CCNNGG	8 cut(s)	8, 78, 397, 439, 1132, 1211, 1488, 1579
BsaWI	WCCGGW	1 cut(s)	446
BsaXI	ACNNNNNCTCC	6 cut(s)	428, 458, 468, 498, 1246, 1276
Bsc4I	CCNNNNNNNGG	6 cut(s)	63, 93, 322, 526, 1288, 1422
Bse118I	RCCGGY	2 cut(s)	56, 86
Bse1I	ACTGG	3 cut(s)	759, 777, 991
Bse3DI	GCAATG	2 cut(s)	643, 1517
BseBI	CCWGG	1 cut(s)	1401
BseDI	CCNNGG	8 cut(s)	8, 78, 397, 439, 1132, 1211, 1488, 1579
BseGI	GGATG	6 cut(s)	36, 940, 1144, 1246, 1374, 1449
BseLI	CCNNNNNNNGG	6 cut(s)	63, 93, 322, 526, 1288, 1422
BseMI	GCAATG	2 cut(s)	643, 1517
BseMII	CTCAG	8 cut(s)	335, 356, 545, 909, 1032, 1076, 1497, 1530
BseNI	ACTGG	3 cut(s)	759, 777, 991
BseRI	GAGGAG	1 cut(s)	50
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	237, 720, 1457
BseYI	CCCAGC	3 cut(s)	224, 1304, 1571
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	4 cut(s)	68, 83, 192, 1326
BshNI	GGYRCC	2 cut(s)	89, 1047
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	4 cut(s)	512, 545, 703, 999
BsiHKCI	CYCGRG	2 cut(s)	886, 1211
BsiSI	CCGG	8 cut(s)	57, 87, 93, 447, 492, 1054, 1212, 1501
BslFI	GGGAC	2 cut(s)	783, 824
BslI	CCNNNNNNNGG	6 cut(s)	63, 93, 322, 526, 1288, 1422
BsmAI	GTCTC	5 cut(s)	45, 201, 324, 664, 1409
BsmBI	CGTCTC	2 cut(s)	45, 324
BsmFI	GGGAC	2 cut(s)	783, 824
BsmI	GAATGC	2 cut(s)	183, 946
BsnI	GGCC	4 cut(s)	68, 83, 192, 1326
Bso31I	GGTCTC	2 cut(s)	664, 1409
BsoBI	CYCGRG	2 cut(s)	886, 1211
Bsp1286I	GDGCHC	4 cut(s)	512, 545, 703, 999
Bsp143I	GATC	5 cut(s)	758, 1069, 1088, 1104, 1173
Bsp1720I	GCTNAGC	1 cut(s)	1506
Bsp19I	CCATGG	3 cut(s)	397, 1488, 1579
BspACI	CCGC	8 cut(s)	75, 78, 80, 84, 728, 736, 1051, 1233
BspANI	GGCC	4 cut(s)	68, 83, 192, 1326
BspCNI	CTCAG	8 cut(s)	334, 355, 544, 910, 1033, 1077, 1498, 1531
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	4 cut(s)	91, 445, 1049, 1577
BspMAI	CTGCAG	1 cut(s)	1170
BspMI	ACCTGC	2 cut(s)	345, 1339
BspPI	GGATC	3 cut(s)	766, 1083, 1181
BspQI	GCTCTTC	1 cut(s)	1287
BspT107I	GGYRCC	2 cut(s)	89, 1047
BspTNI	GGTCTC	2 cut(s)	664, 1409
BsrDI	GCAATG	2 cut(s)	643, 1517
BsrFI	RCCGGY	2 cut(s)	56, 86
BsrI	ACTGG	3 cut(s)	759, 777, 991
BssAI	RCCGGY	2 cut(s)	56, 86
BssECI	CCNNGG	8 cut(s)	8, 78, 397, 439, 1132, 1211, 1488, 1579
BssMI	GATC	5 cut(s)	758, 1069, 1088, 1104, 1173
BssNI	GRCGYC	5 cut(s)	54, 90, 201, 1048, 1530
BssT1I	CCWWGG	5 cut(s)	397, 439, 1132, 1488, 1579
Bst2UI	CCWGG	1 cut(s)	1401
Bst4CI	ACNGT	1 cut(s)	982
Bst6I	CTCTTC	5 cut(s)	274, 800, 816, 830, 1287
BstACI	GRCGYC	5 cut(s)	54, 90, 201, 1048, 1530
BstC8I	GCNNGC	6 cut(s)	58, 88, 248, 528, 1023, 1458
BstDSI	CCRYGG	4 cut(s)	78, 397, 1488, 1579
BstF5I	GGATG	6 cut(s)	36, 940, 1144, 1246, 1374, 1449
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	3 cut(s)	93, 734, 1051
BstHHI	GCGC	3 cut(s)	92, 733, 1050
BstKTI	GATC	5 cut(s)	761, 1072, 1091, 1107, 1176
BstMAI	GTCTC	5 cut(s)	45, 201, 324, 664, 1409
BstMBI	GATC	5 cut(s)	758, 1069, 1088, 1104, 1173
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 74, 83, 89, 189, 580, 1081, 1314, 1323
BstNI	CCWGG	1 cut(s)	1401
BstNSI	RCATGY	2 cut(s)	526, 1384
BstSCI	CCNGG	6 cut(s)	92, 491, 1210, 1211, 1399, 1500
BstSFI	CTRYAG	2 cut(s)	1166, 1428
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	237, 720, 1457
BstV2I	GAAGAC	3 cut(s)	267, 351, 1402
BstX2I	RGATCY	1 cut(s)	1088
BstYI	RGATCY	1 cut(s)	1088
BstZI	CGGCCG	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	68, 83, 192, 1326
BtgI	CCRYGG	4 cut(s)	78, 397, 1488, 1579
BtsCI	GGATG	6 cut(s)	36, 940, 1144, 1246, 1374, 1449
BveI	ACCTGC	2 cut(s)	345, 1339
Cac8I	GCNNGC	6 cut(s)	58, 88, 248, 528, 1023, 1458
CaiI	CAGNNNCTG	1 cut(s)	538
CciNI	GCGGCCGC	1 cut(s)	81
CfoI	GCGC	3 cut(s)	92, 733, 1050
Cfr10I	RCCGGY	2 cut(s)	56, 86
Cfr13I	GGNCC	3 cut(s)	66, 190, 394
Cfr42I	CCGCGG	1 cut(s)	81
Cfr9I	CCCGGG	1 cut(s)	1211
CseI	GACGC	1 cut(s)	62
CsiI	ACCWGGT	1 cut(s)	1399
Csp6I	GTAC	5 cut(s)	166, 978, 1150, 1239, 1556
CspCI	CAANNNNNGTGG	2 cut(s)	934, 969
CviAII	CATG	9 cut(s)	139, 169, 398, 523, 814, 1381, 1489, 1580, 1585
CviQI	GTAC	5 cut(s)	166, 978, 1150, 1239, 1556
DinI	GGCGCC	2 cut(s)	91, 1049
DpnI	GATC	5 cut(s)	760, 1071, 1090, 1106, 1175
DpnII	GATC	5 cut(s)	758, 1069, 1088, 1104, 1173
DriI	GACNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	2 cut(s)	81, 1324
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	5 cut(s)	274, 800, 816, 830, 1287
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	5 cut(s)	274, 800, 816, 830, 1287
Ecl136II	GAGCTC	1 cut(s)	510
EclXI	CGGCCG	1 cut(s)	81
Eco130I	CCWWGG	5 cut(s)	397, 439, 1132, 1488, 1579
Eco24I	GRGCYC	1 cut(s)	512
Eco31I	GGTCTC	2 cut(s)	664, 1409
Eco47I	GGWCC	1 cut(s)	394
Eco52I	CGGCCG	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	510
Eco57I	CTGAAG	2 cut(s)	615, 662
Eco88I	CYCGRG	2 cut(s)	886, 1211
EcoICRI	GAGCTC	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	1399
EcoT14I	CCWWGG	5 cut(s)	397, 439, 1132, 1488, 1579
EcoT38I	GRGCYC	1 cut(s)	512
EgeI	GGCGCC	2 cut(s)	91, 1049
EheI	GGCGCC	2 cut(s)	91, 1049
ErhI	CCWWGG	5 cut(s)	397, 439, 1132, 1488, 1579
Esp3I	CGTCTC	2 cut(s)	45, 324
FaeI	CATG	9 cut(s)	142, 172, 401, 526, 817, 1384, 1492, 1583, 1588
FaqI	GGGAC	2 cut(s)	783, 824
FatI	CATG	9 cut(s)	138, 168, 397, 522, 813, 1380, 1488, 1579, 1584
Fnu4HI	GCNGC	9 cut(s)	5, 78, 81, 84, 251, 729, 734, 1051, 1471
FokI	GGATG	6 cut(s)	43, 947, 1151, 1233, 1361, 1436
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	9 cut(s)	5, 78, 81, 84, 251, 729, 734, 1051, 1471
FspBI	CTAG	2 cut(s)	1278, 1314
GlaI	GCGC	3 cut(s)	91, 732, 1049
GluI	GCNGC	9 cut(s)	5, 78, 81, 84, 251, 729, 734, 1051, 1471
GsaI	CCCAGC	3 cut(s)	228, 1308, 1575
GsuI	CTGGAG	1 cut(s)	164
HaeII	RGCGCY	3 cut(s)	93, 734, 1051
HaeIII	GGCC	4 cut(s)	68, 83, 192, 1326
HapII	CCGG	8 cut(s)	57, 87, 93, 447, 492, 1054, 1212, 1501
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	3 cut(s)	92, 733, 1050
Hin1I	GRCGYC	5 cut(s)	54, 90, 201, 1048, 1530
Hin1II	CATG	9 cut(s)	142, 172, 401, 526, 817, 1384, 1492, 1583, 1588
Hin6I	GCGC	3 cut(s)	90, 731, 1048
HinP1I	GCGC	3 cut(s)	90, 731, 1048
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	7 cut(s)	266, 535, 709, 902, 1030, 1199, 1565
HpaII	CCGG	8 cut(s)	57, 87, 93, 447, 492, 1054, 1212, 1501
HphI	GGTGA	1 cut(s)	1004
Hpy166II	GTNNAC	7 cut(s)	162, 265, 328, 752, 915, 1372, 1534
Hpy188I	TCNGA	9 cut(s)	199, 206, 345, 534, 720, 763, 907, 1035, 1101
Hpy188III	TCNNGA	4 cut(s)	392, 431, 778, 1526
Hpy8I	GTNNAC	7 cut(s)	162, 265, 328, 752, 915, 1372, 1534
HpyAV	CCTTC	4 cut(s)	686, 785, 1352, 1514
HpyCH4III	ACNGT	1 cut(s)	982
HpyCH4IV	ACGT	4 cut(s)	164, 201, 215, 1530
HpyCH4V	TGCA	7 cut(s)	526, 553, 1142, 1168, 1220, 1334, 1515
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 74, 83, 89, 189, 580, 1081, 1314, 1323
HpySE526I	ACGT	4 cut(s)	164, 201, 215, 1530
Hsp92I	GRCGYC	5 cut(s)	54, 90, 201, 1048, 1530
Hsp92II	CATG	9 cut(s)	142, 172, 401, 526, 817, 1384, 1492, 1583, 1588
HspAI	GCGC	3 cut(s)	90, 731, 1048
KasI	GGCGCC	2 cut(s)	89, 1047
KroI	GCCGGC	2 cut(s)	56, 86
KroNI	GCCGGC	2 cut(s)	58, 88
KspI	CCGCGG	1 cut(s)	81
Kzo9I	GATC	5 cut(s)	758, 1069, 1088, 1104, 1173
LguI	GCTCTTC	1 cut(s)	1287
LmnI	GCTCC	6 cut(s)	449, 515, 548, 698, 968, 1209
Lsp1109I	GCAGC	3 cut(s)	237, 720, 1457
LweI	GCATC	1 cut(s)	1129
MabI	ACCWGGT	1 cut(s)	1399
MaeI	CTAG	2 cut(s)	1278, 1314
MaeII	ACGT	4 cut(s)	164, 201, 215, 1530
MaeIII	GTNAC	2 cut(s)	782, 982
MalI	GATC	5 cut(s)	760, 1071, 1090, 1106, 1175
MboI	GATC	5 cut(s)	758, 1069, 1088, 1104, 1173
MfeI	CAATTG	1 cut(s)	1143
MflI	RGATCY	1 cut(s)	1088
MhlI	GDGCHC	4 cut(s)	512, 545, 703, 999
MlsI	TGGCCA	1 cut(s)	1326
MluCI	AATT	8 cut(s)	127, 420, 547, 554, 598, 742, 1143, 1193
MluNI	TGGCCA	1 cut(s)	1326
Mly113I	GGCGCC	2 cut(s)	90, 1048
MlyI	GAGTC	3 cut(s)	260, 703, 1208
MmeI	TCCRAC	1 cut(s)	537
Mox20I	TGGCCA	1 cut(s)	1326
MreI	CGCCGGCG	2 cut(s)	56, 86
MroNI	GCCGGC	2 cut(s)	56, 86
MscI	TGGCCA	1 cut(s)	1326
MseI	TTAA	2 cut(s)	488, 1287
MslI	CAYNNNNRTG	2 cut(s)	521, 1379
Msp20I	TGGCCA	1 cut(s)	1326
MspA1I	CMGCKG	2 cut(s)	80, 1571
MspI	CCGG	8 cut(s)	57, 87, 93, 447, 492, 1054, 1212, 1501
MspR9I	CCNGG	6 cut(s)	94, 493, 1212, 1213, 1401, 1502
MunI	CAATTG	1 cut(s)	1143
Mva1269I	GAATGC	2 cut(s)	183, 946
MvaI	CCWGG	1 cut(s)	1401
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	9 cut(s)	10, 74, 83, 89, 189, 580, 1081, 1314, 1323
NaeI	GCCGGC	2 cut(s)	58, 88
NarI	GGCGCC	2 cut(s)	90, 1048
NciI	CCSGG	5 cut(s)	94, 493, 1212, 1213, 1502
NcoI	CCATGG	3 cut(s)	397, 1488, 1579
NdeII	GATC	5 cut(s)	758, 1069, 1088, 1104, 1173
NgoMIV	GCCGGC	2 cut(s)	56, 86
NlaIII	CATG	9 cut(s)	142, 172, 401, 526, 817, 1384, 1492, 1583, 1588
NlaIV	GGNNCC	4 cut(s)	91, 445, 1049, 1577
NmeAIII	GCCGAG	1 cut(s)	33
NotI	GCGGCCGC	1 cut(s)	81
NspI	RCATGY	2 cut(s)	526, 1384
PciI	ACATGT	1 cut(s)	1380
PciSI	GCTCTTC	1 cut(s)	1287
PctI	GAATGC	2 cut(s)	183, 946
PdiI	GCCGGC	2 cut(s)	58, 88
PfeI	GAWTC	4 cut(s)	535, 902, 1030, 1565
PflFI	GACNNNGTC	1 cut(s)	1401
PkrI	GCNGC	9 cut(s)	6, 79, 82, 85, 252, 730, 735, 1052, 1472
PleI	GAGTC	3 cut(s)	260, 703, 1207
PluTI	GGCGCC	2 cut(s)	93, 1051
PpsI	GAGTC	3 cut(s)	260, 703, 1207
PscI	ACATGT	1 cut(s)	1380
Psp124BI	GAGCTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	1399
PspFI	CCCAGC	3 cut(s)	224, 1304, 1571
PspGI	CCWGG	1 cut(s)	1399
PspN4I	GGNNCC	4 cut(s)	91, 445, 1049, 1577
PspPI	GGNCC	3 cut(s)	66, 190, 394
PstI	CTGCAG	1 cut(s)	1170
PstNI	CAGNNNCTG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	1088
PsyI	GACNNNGTC	1 cut(s)	1401
PvuII	CAGCTG	1 cut(s)	1571
RsaI	GTAC	5 cut(s)	167, 979, 1151, 1240, 1557
RsaNI	GTAC	5 cut(s)	166, 978, 1150, 1239, 1556
RseI	CAYNNNNRTG	2 cut(s)	521, 1379
SacI	GAGCTC	1 cut(s)	512
SacII	CCGCGG	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	1287
SaqAI	TTAA	2 cut(s)	488, 1287
SatI	GCNGC	9 cut(s)	5, 78, 81, 84, 251, 729, 734, 1051, 1471
Sau3AI	GATC	5 cut(s)	758, 1069, 1088, 1104, 1173
Sau96I	GGNCC	3 cut(s)	66, 190, 394
ScaI	AGTACT	4 cut(s)	979, 1151, 1240, 1557
SchI	GAGTC	3 cut(s)	260, 703, 1208
ScrFI	CCNGG	6 cut(s)	94, 493, 1212, 1213, 1401, 1502
SduI	GDGCHC	4 cut(s)	512, 545, 703, 999
SexAI	ACCWGGT	1 cut(s)	1399
SfaNI	GCATC	1 cut(s)	1129
SfcI	CTRYAG	2 cut(s)	1166, 1428
SfoI	GGCGCC	2 cut(s)	91, 1049
Sfr303I	CCGCGG	1 cut(s)	81
SgrAI	CRCCGGYG	2 cut(s)	56, 86
SgrBI	CCGCGG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	394
SmaI	CCCGGG	1 cut(s)	1213
SmiMI	CAYNNNNRTG	2 cut(s)	521, 1379
SmlI	CTYRAG	2 cut(s)	584, 778
SmoI	CTYRAG	2 cut(s)	584, 778
Sse9I	AATT	8 cut(s)	127, 420, 547, 554, 598, 742, 1143, 1193
SsiI	CCGC	8 cut(s)	75, 78, 80, 84, 728, 736, 1051, 1233
SspDI	GGCGCC	2 cut(s)	89, 1047
SspMI	CTAG	2 cut(s)	1278, 1314
SstI	GAGCTC	1 cut(s)	512
StyD4I	CCNGG	6 cut(s)	92, 491, 1210, 1211, 1399, 1500
StyI	CCWWGG	5 cut(s)	397, 439, 1132, 1488, 1579
TaaI	ACNGT	1 cut(s)	982
TaiI	ACGT	4 cut(s)	167, 204, 218, 1533
TaqI	TCGA	4 cut(s)	125, 312, 458, 879
TasI	AATT	8 cut(s)	127, 420, 547, 554, 598, 742, 1143, 1193
TatI	WGTACW	4 cut(s)	977, 1149, 1238, 1555
TauI	GCSGC	5 cut(s)	80, 83, 86, 731, 1053
TfiI	GAWTC	4 cut(s)	535, 902, 1030, 1565
Tru1I	TTAA	2 cut(s)	488, 1287
Tru9I	TTAA	2 cut(s)	488, 1287
TseI	GCWGC	4 cut(s)	4, 250, 733, 1470
TspDTI	ATGAA	4 cut(s)	185, 482, 804, 1235
TspGWI	ACGGA	1 cut(s)	1081
TspMI	CCCGGG	1 cut(s)	1211
Tth111I	GACNNNGTC	1 cut(s)	1401
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	2 cut(s)	127, 742
XceI	RCATGY	2 cut(s)	526, 1384
XcmI	CCANNNNNNNNNTGG	2 cut(s)	446, 1385
XmaI	CCCGGG	1 cut(s)	1211
XspI	CTAG	2 cut(s)	1278, 1314
ZraI	GACGTC	2 cut(s)	202, 1531
ZrmI	AGTACT	4 cut(s)	979, 1151, 1240, 1557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.