Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001985

Physical Location & Seq

Genomic Coordinates Reverse (-)

292112 .. 294933

Gene Structure 2822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGCTGCCCATGTCCAGCGGCGCCGTTTGGATGAACAGAGAGGGAGAAGACGCAGTTTCTTCTTGGACCAGCAACCCCCATAACAACAATGAAACAGAGCCCAAAGACCTGACCTTGTCCAACTTCAAAGCCATGTTAGAAGGTGACTGGTACTTGAACAACAACAACAACAACAACAACAACGTCGTCCTCAACCAAGAGAACATTAACTGCTTCTCTTCCAACCCCTTTCAAATGGACACCTCCGCTTCTTGCTCTCCGTCCAGGGCATTTACTCTTTTAAATTCAAATCCCAATCCCAATCCCAACTCCAAATCCTGCTTCTCTTCTCTCCCAAACTCTAATCCATTCTATAATAATTTCAATTTGGTTGGCGAAAGTGAGCTCTTAACCCAGCTTCAGCAGGAAAATGGAGCTTTGATGAACTTGGCAGCTCTTAATCCTCACTCACAGGTGGCTGCAACTCCTGCACTCAGTTCCGGCACCGAGTTCCCCTCGAATCAGCTGCTTCCAGTATCCGGCAACACCGCCGGTGTCTTTAGCAACGCCGGCTTCGACAGCTCCGGGAGTGCTCTGTTACTGAACAGGGCTGAGGATATGAGTTTCCCTTGTTCCATGGGTGGTGTACAGCCCACTCTGTATCAGAAGCGAGCTGCATTTCGCCAGAACTCCACTGGCAGCAGCGGCTGCGATATATTGGGCAACTTGGAGATTTCGGGGCCCAGTTACTCCGGCTTGGGTTTGGAGGAGAAAAGGAAGAGGAGACATAATGAGAGCGAAATGGAAGACGATATGTCTAGTTTGAATTTTTATGATTCTGATGGTCAAGTGGAGGAGGAGGAGGGGAATGTGAATAATGCCGCTGGTGGAGGCTATTCTAATGTCAATAGTAGTGTCACTGATGGAGATTTCAAGGGGAAGAAGACGGGTTTACCGGCCAAAAATCTCATGGCCGAAAGGCGCCGGAGGAAGAAGCTCAACGACAGGCTCTACATGCTTAGGTCTGTAGTACCCAAGATAAGCAAGATGGATAGAGCGTCCATACTTGGGGATGCAATTGACTATTTGAGAGAGCTTCTGGGAAGGATTGATGACCTCCATAAGGAGCTGGAATCAGCTGCACCTGGCTCTTCGTTGCAACCGTCAACAAACTTTAACCCATTGACACCAACTCCACTCACCTATCCCAGCCGTATCAAGGAGGAGCTCCGTCCTAGCTCCTTGCCAACCCCTAAAAGCCAACAACCTGCTCCAAAGGTGGATGTTCAGGTAAGGGAAGGACGAGCTCTTAACATCCGCATGTTATCTCCACGCAGACCAGGTCTGTTGCTCTCTACTATGAGAGCCTTGGACAACCTTGGGTTAGACATCCAGCAGGCTGTGATCAGCTGCTTTAATGGATTTACTCTGGATGTGTTCCGAGCTGAGCAATCCAGGGAAAGCCATTTCTTGCCTGAGCAAATTAGAGCGGTACTCTTGAAATCAGCTGGCTTTGATGGTATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

502

Amino Acids

54.96

Weight (kDa)

5.41

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	316 - 359	3.2e-06	Transcription factor SAC51 bHLH domain
HLH	PF00010	317 - 359	3.8e-09	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	420 - 488	5.4e-10	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12860 AT1G12860 AT1G12860 AT3G26744 AT3G26744 AT3G26744 AT3G26744 AT3G26744
fragaria_vesca	FvH4_5g09300 FvH4_5g09300
malus_domestica	MD06G1132200.v1.1 MD09G1003800.v1.1 MD14G1148600.v1.1 MD17G1007400.v1.1
prunus_persica	Prupe.3G312800_v2.0.a1 Prupe.3G312800_v2.0.a1 Prupe.5G143200_v2.0.a1
pyrus_communis	pycom06g12380 pycom111g00280 pycom14g12340 pycom17g00300
rosa_chinensis	RchiOBHm_Chr2g0176421 RchiOBHm_Chr7g0188921
rosa_laevigata	RLG00000004651 RLG00000022412
rosa_multiflora	Rmu_co8326225.1_g000001 Rmu_co8487291.1_g000001 Rmu_sc0009140.1_g000010 Rmu_sc0011904.1_g000015 Rmu_ssc0000113.1_g000008
rosa_roxburghii	Rroxscaffold_2G00076450 Rroxscaffold_3G00265940
rosa_rugosa	Rorug02G0594200 Rorug02G0594200 Rorug06G0494600
rosa_samantha	Rh2AG672700 Rh2BG684200 Rh2CG647000 Rh2DG697800 Rh7AG099500 Rh7BG101600 Rh7CG102900 Rh7DG101300
rosa_wichuraiana	Rw2G055180 Rw7G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1255
AccB1I	GGYRCC	3 cut(s)	20, 482, 960
AccBSI	CCGCTC	1 cut(s)	1469
AciI	CCGC	7 cut(s)	18, 246, 528, 684, 861, 1297, 1469
AcoI	YGGCCR	2 cut(s)	936, 951
AcsI	RAATTY	2 cut(s)	283, 805
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	2 cut(s)	21, 961
AfaI	GTAC	4 cut(s)	152, 627, 1011, 1473
AfiI	CCNNNNNNNGG	4 cut(s)	518, 1047, 1102, 1198
AgsI	TTSAA	8 cut(s)	127, 157, 233, 288, 364, 805, 913, 1480
AhdI	GACNNNNNGTC	1 cut(s)	793
AjnI	CCWGG	4 cut(s)	263, 1123, 1318, 1433
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
Alw21I	GWGCWC	4 cut(s)	387, 574, 1209, 1288
Alw26I	GTCTC	1 cut(s)	757
AlwNI	CAGNNNCTG	1 cut(s)	687
AoxI	GGCC	3 cut(s)	719, 936, 951
ApaI	GGGCCC	1 cut(s)	723
ApoI	RAATTY	2 cut(s)	283, 805
AspLEI	GCGC	2 cut(s)	23, 963
AspS9I	GGNCC	3 cut(s)	66, 719, 720
AsuC2I	CCSGG	1 cut(s)	565
AsuHPI	GGTGA	2 cut(s)	155, 1171
AvaII	GGWCC	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	723
BanI	GGYRCC	3 cut(s)	20, 482, 960
BanII	GRGCYC	5 cut(s)	102, 387, 723, 1209, 1288
BbsI	GAAGAC	3 cut(s)	54, 792, 929
Bbv12I	GWGCWC	4 cut(s)	387, 574, 1209, 1288
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	9 cut(s)	443, 445, 492, 640, 674, 690, 693, 1105, 1376
BccI	CCATC	4 cut(s)	815, 896, 1021, 1490
BceAI	ACGGC	2 cut(s)	8, 1176
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BciT130I	CCWGG	4 cut(s)	265, 1125, 1320, 1435
BciVI	GTATCC	1 cut(s)	526
BclI	TGATCA	1 cut(s)	1383
BcnI	CCSGG	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	757
BfaI	CTAG	2 cut(s)	798, 1215
BfmI	CTRYAG	1 cut(s)	1005
BfoI	RGCGCY	2 cut(s)	24, 964
BfuAI	ACCTGC	1 cut(s)	1255
BfuI	GTATCC	1 cut(s)	526
BlpI	GCTNAGC	1 cut(s)	1425
Bme1390I	CCNGG	5 cut(s)	265, 565, 1125, 1320, 1435
Bme18I	GGWCC	1 cut(s)	66
BmeRI	GACNNNNNGTC	1 cut(s)	793
BmgT120I	GGNCC	3 cut(s)	66, 719, 720
BmiI	GGNNCC	5 cut(s)	22, 484, 720, 721, 962
BmrFI	CCNGG	5 cut(s)	265, 565, 1125, 1320, 1435
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	1 cut(s)	1042
BmuI	ACTGGG	1 cut(s)	717
BpiI	GAAGAC	3 cut(s)	54, 792, 929
BplI	GAGNNNNNCTC	4 cut(s)	479, 511, 1458, 1490
Bpu10I	CCTNAGC	3 cut(s)	591, 998, 1455
Bpu1102I	GCTNAGC	1 cut(s)	1425
BpuMI	CCSGG	1 cut(s)	565
BsaHI	GRCGYC	2 cut(s)	21, 961
BsaJI	CCNNGG	5 cut(s)	264, 615, 1347, 1357, 1434
BsaXI	ACNNNNNCTCC	2 cut(s)	1156, 1186
Bsc4I	CCNNNNNNNGG	4 cut(s)	518, 1047, 1102, 1198
Bse118I	RCCGGY	3 cut(s)	530, 548, 934
Bse1I	ACTGG	4 cut(s)	152, 512, 679, 723
BseBI	CCWGG	4 cut(s)	265, 1125, 1320, 1435
BseDI	CCNNGG	5 cut(s)	264, 615, 1347, 1357, 1434
BseGI	GGATG	6 cut(s)	36, 1057, 1267, 1293, 1368, 1417
BseLI	CCNNNNNNNGG	4 cut(s)	518, 1047, 1102, 1198
BseMII	CTCAG	4 cut(s)	487, 582, 1416, 1446
BseNI	ACTGG	4 cut(s)	152, 512, 679, 723
BseRI	GAGGAG	6 cut(s)	761, 775, 848, 851, 854, 1217
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	9 cut(s)	443, 445, 492, 640, 674, 690, 693, 1105, 1376
BseYI	CCCAGC	2 cut(s)	393, 1187
BsgI	GTGCAG	2 cut(s)	453, 1104
BshFI	GGCC	3 cut(s)	721, 938, 953
BshNI	GGYRCC	3 cut(s)	20, 482, 960
BsiHKAI	GWGCWC	4 cut(s)	387, 574, 1209, 1288
BsiSI	CCGG	8 cut(s)	480, 519, 531, 549, 564, 732, 935, 964
BslI	CCNNNNNNNGG	4 cut(s)	518, 1047, 1102, 1198
BsmAI	GTCTC	1 cut(s)	757
BsnI	GGCC	3 cut(s)	721, 938, 953
Bsp120I	GGGCCC	1 cut(s)	719
Bsp1286I	GDGCHC	6 cut(s)	102, 387, 574, 723, 1209, 1288
Bsp1407I	TGTACA	1 cut(s)	625
Bsp143I	GATC	1 cut(s)	1383
Bsp1720I	GCTNAGC	1 cut(s)	1425
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	7 cut(s)	18, 246, 528, 684, 861, 1297, 1469
BspANI	GGCC	3 cut(s)	721, 938, 953
BspCNI	CTCAG	4 cut(s)	486, 583, 1417, 1447
BspLI	GGNNCC	5 cut(s)	22, 484, 720, 721, 962
BspMI	ACCTGC	1 cut(s)	1255
BspQI	GCTCTTC	1 cut(s)	1135
BspT107I	GGYRCC	3 cut(s)	20, 482, 960
BsrBI	CCGCTC	1 cut(s)	1469
BsrFI	RCCGGY	3 cut(s)	530, 548, 934
BsrGI	TGTACA	1 cut(s)	625
BsrI	ACTGG	4 cut(s)	152, 512, 679, 723
BssAI	RCCGGY	3 cut(s)	530, 548, 934
BssECI	CCNNGG	5 cut(s)	264, 615, 1347, 1357, 1434
BssMI	GATC	1 cut(s)	1383
BssNI	GRCGYC	2 cut(s)	21, 961
BssT1I	CCWWGG	3 cut(s)	615, 1347, 1357
Bst2UI	CCWGG	4 cut(s)	265, 1125, 1320, 1435
Bst4CI	ACNGT	1 cut(s)	1143
Bst6I	CTCTTC	4 cut(s)	223, 331, 752, 1135
BstACI	GRCGYC	2 cut(s)	21, 961
BstAPI	GCANNNNNTGC	2 cut(s)	467, 687
BstAUI	TGTACA	1 cut(s)	625
BstC8I	GCNNGC	4 cut(s)	550, 651, 1377, 1489
BstDEI	CTNAG	5 cut(s)	473, 591, 998, 1425, 1455
BstDSI	CCRYGG	1 cut(s)	615
BstENI	CCTNNNNNAGG	1 cut(s)	1100
BstF5I	GGATG	6 cut(s)	36, 1057, 1267, 1293, 1368, 1417
BstH2I	RGCGCY	2 cut(s)	24, 964
BstHHI	GCGC	2 cut(s)	23, 963
BstKTI	GATC	1 cut(s)	1386
BstMAI	GTCTC	1 cut(s)	757
BstMBI	GATC	1 cut(s)	1383
BstMWI	GCNNNNNNNGC	6 cut(s)	467, 549, 558, 684, 687, 994
BstNI	CCWGG	4 cut(s)	265, 1125, 1320, 1435
BstNSI	RCATGY	2 cut(s)	997, 1303
BstSCI	CCNGG	5 cut(s)	263, 563, 1123, 1318, 1433
BstSFI	CTRYAG	1 cut(s)	1005
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	9 cut(s)	443, 445, 492, 640, 674, 690, 693, 1105, 1376
BstV2I	GAAGAC	3 cut(s)	54, 792, 929
BsuI	GTATCC	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	721, 938, 953
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	6 cut(s)	36, 1057, 1267, 1293, 1368, 1417
BtsIMutI	CAGTG	2 cut(s)	672, 897
BveI	ACCTGC	1 cut(s)	1255
Cac8I	GCNNGC	4 cut(s)	550, 651, 1377, 1489
CaiI	CAGNNNCTG	1 cut(s)	687
CfoI	GCGC	2 cut(s)	23, 963
Cfr10I	RCCGGY	3 cut(s)	530, 548, 934
Cfr13I	GGNCC	3 cut(s)	66, 719, 720
CseI	GACGC	2 cut(s)	59, 1026
CsiI	ACCWGGT	1 cut(s)	1318
Csp6I	GTAC	4 cut(s)	151, 626, 1010, 1472
CviAII	CATG	6 cut(s)	10, 133, 616, 949, 994, 1300
CviQI	GTAC	4 cut(s)	151, 626, 1010, 1472
DdeI	CTNAG	5 cut(s)	473, 591, 998, 1425, 1455
DinI	GGCGCC	2 cut(s)	22, 962
DpnI	GATC	1 cut(s)	1385
DpnII	GATC	1 cut(s)	1383
DraI	TTTAAA	1 cut(s)	282
DriI	GACNNNNNGTC	1 cut(s)	793
EaeI	YGGCCR	2 cut(s)	936, 951
Eam1104I	CTCTTC	4 cut(s)	223, 331, 752, 1135
Eam1105I	GACNNNNNGTC	1 cut(s)	793
EarI	CTCTTC	4 cut(s)	223, 331, 752, 1135
Ecl136II	GAGCTC	3 cut(s)	385, 1207, 1286
Eco130I	CCWWGG	3 cut(s)	615, 1347, 1357
Eco24I	GRGCYC	5 cut(s)	102, 387, 723, 1209, 1288
Eco47I	GGWCC	1 cut(s)	66
Eco53kI	GAGCTC	3 cut(s)	385, 1207, 1286
Eco57I	CTGAAG	1 cut(s)	383
EcoICRI	GAGCTC	3 cut(s)	385, 1207, 1286
EcoNI	CCTNNNNNAGG	1 cut(s)	1100
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRII	CCWGG	4 cut(s)	263, 1123, 1318, 1433
EcoT14I	CCWWGG	3 cut(s)	615, 1347, 1357
EcoT38I	GRGCYC	5 cut(s)	102, 387, 723, 1209, 1288
EgeI	GGCGCC	2 cut(s)	22, 962
EheI	GGCGCC	2 cut(s)	22, 962
ErhI	CCWWGG	3 cut(s)	615, 1347, 1357
FaeI	CATG	6 cut(s)	13, 136, 619, 952, 997, 1303
FatI	CATG	6 cut(s)	9, 132, 615, 948, 993, 1299
FbaI	TGATCA	1 cut(s)	1383
FokI	GGATG	6 cut(s)	43, 1064, 1274, 1280, 1355, 1424
FriOI	GRGCYC	5 cut(s)	102, 387, 723, 1209, 1288
FspBI	CTAG	2 cut(s)	798, 1215
GlaI	GCGC	2 cut(s)	22, 962
GsaI	CCCAGC	2 cut(s)	397, 1191
HaeII	RGCGCY	2 cut(s)	24, 964
HaeIII	GGCC	3 cut(s)	721, 938, 953
HapII	CCGG	8 cut(s)	480, 519, 531, 549, 564, 732, 935, 964
HgaI	GACGC	2 cut(s)	59, 1026
HhaI	GCGC	2 cut(s)	23, 963
Hin1I	GRCGYC	2 cut(s)	21, 961
Hin1II	CATG	6 cut(s)	13, 136, 619, 952, 997, 1303
Hin6I	GCGC	2 cut(s)	21, 961
HinP1I	GCGC	2 cut(s)	21, 961
HincII	GTYRAC	1 cut(s)	1146
HindII	GTYRAC	1 cut(s)	1146
HinfI	GANTC	3 cut(s)	499, 815, 1112
HpaII	CCGG	8 cut(s)	480, 519, 531, 549, 564, 732, 935, 964
HphI	GGTGA	2 cut(s)	155, 1171
Hpy166II	GTNNAC	3 cut(s)	626, 932, 1146
Hpy188I	TCNGA	3 cut(s)	645, 820, 1421
Hpy188III	TCNNGA	2 cut(s)	1409, 1477
Hpy8I	GTNNAC	3 cut(s)	626, 932, 1146
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	134, 1077, 1271
HpyCH4III	ACNGT	1 cut(s)	1143
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	6 cut(s)	461, 470, 656, 1055, 1121, 1138
HpyF10VI	GCNNNNNNNGC	6 cut(s)	467, 549, 558, 684, 687, 994
HpyF3I	CTNAG	5 cut(s)	473, 591, 998, 1425, 1455
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	2 cut(s)	21, 961
Hsp92II	CATG	6 cut(s)	13, 136, 619, 952, 997, 1303
HspAI	GCGC	2 cut(s)	21, 961
KasI	GGCGCC	2 cut(s)	20, 960
KroI	GCCGGC	1 cut(s)	548
KroNI	GCCGGC	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	1383
Kzo9I	GATC	1 cut(s)	1383
LguI	GCTCTTC	1 cut(s)	1135
LmnI	GCTCC	7 cut(s)	413, 566, 1105, 1204, 1212, 1223, 1255
Lsp1109I	GCAGC	9 cut(s)	443, 445, 492, 640, 674, 690, 693, 1105, 1376
LweI	GCATC	1 cut(s)	1042
MabI	ACCWGGT	1 cut(s)	1318
MaeI	CTAG	2 cut(s)	798, 1215
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	4 cut(s)	143, 576, 725, 895
MalI	GATC	1 cut(s)	1385
MbiI	CCGCTC	1 cut(s)	1469
MboI	GATC	1 cut(s)	1383
MfeI	CAATTG	1 cut(s)	1056
MhlI	GDGCHC	6 cut(s)	102, 387, 574, 723, 1209, 1288
MluCI	AATT	6 cut(s)	283, 358, 364, 805, 1056, 1461
Mly113I	GGCGCC	2 cut(s)	21, 961
MmeI	TCCRAC	2 cut(s)	144, 246
MroNI	GCCGGC	1 cut(s)	548
MseI	TTAA	7 cut(s)	207, 281, 389, 438, 1155, 1290, 1395
MslI	CAYNNNNRTG	1 cut(s)	1298
MspA1I	CMGCKG	7 cut(s)	18, 505, 684, 863, 1118, 1389, 1487
MspI	CCGG	8 cut(s)	480, 519, 531, 549, 564, 732, 935, 964
MspR9I	CCNGG	5 cut(s)	265, 565, 1125, 1320, 1435
MunI	CAATTG	1 cut(s)	1056
MvaI	CCWGG	4 cut(s)	265, 1125, 1320, 1435
MwoI	GCNNNNNNNGC	6 cut(s)	467, 549, 558, 684, 687, 994
NaeI	GCCGGC	1 cut(s)	550
NarI	GGCGCC	2 cut(s)	21, 961
NciI	CCSGG	1 cut(s)	565
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	1 cut(s)	1383
NgoMIV	GCCGGC	1 cut(s)	548
NlaIII	CATG	6 cut(s)	13, 136, 619, 952, 997, 1303
NlaIV	GGNNCC	5 cut(s)	22, 484, 720, 721, 962
NmuCI	GTSAC	2 cut(s)	143, 895
NspI	RCATGY	2 cut(s)	997, 1303
PciSI	GCTCTTC	1 cut(s)	1135
PcsI	WCGNNNNNNNCGW	2 cut(s)	552, 1139
PdiI	GCCGGC	1 cut(s)	550
PfeI	GAWTC	3 cut(s)	499, 815, 1112
PflFI	GACNNNGTC	2 cut(s)	115, 1320
PfoI	TCCNGGA	1 cut(s)	563
PluTI	GGCGCC	2 cut(s)	24, 964
Psp124BI	GAGCTC	3 cut(s)	387, 1209, 1288
Psp6I	CCWGG	4 cut(s)	263, 1123, 1318, 1433
PspFI	CCCAGC	2 cut(s)	393, 1187
PspGI	CCWGG	4 cut(s)	263, 1123, 1318, 1433
PspN4I	GGNNCC	5 cut(s)	22, 484, 720, 721, 962
PspOMI	GGGCCC	1 cut(s)	719
PspPI	GGNCC	3 cut(s)	66, 719, 720
PstNI	CAGNNNCTG	1 cut(s)	687
PsyI	GACNNNGTC	2 cut(s)	115, 1320
PvuII	CAGCTG	4 cut(s)	505, 1118, 1389, 1487
RsaI	GTAC	4 cut(s)	152, 627, 1011, 1473
RsaNI	GTAC	4 cut(s)	151, 626, 1010, 1472
RseI	CAYNNNNRTG	1 cut(s)	1298
SacI	GAGCTC	3 cut(s)	387, 1209, 1288
SapI	GCTCTTC	1 cut(s)	1135
SaqAI	TTAA	7 cut(s)	207, 281, 389, 438, 1155, 1290, 1395
Sau3AI	GATC	1 cut(s)	1383
Sau96I	GGNCC	3 cut(s)	66, 719, 720
ScrFI	CCNGG	5 cut(s)	265, 565, 1125, 1320, 1435
SduI	GDGCHC	6 cut(s)	102, 387, 574, 723, 1209, 1288
SexAI	ACCWGGT	1 cut(s)	1318
SfaNI	GCATC	1 cut(s)	1042
SfcI	CTRYAG	1 cut(s)	1005
SfoI	GGCGCC	2 cut(s)	22, 962
SgrAI	CRCCGGYG	1 cut(s)	530
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	1298
Sse9I	AATT	6 cut(s)	283, 358, 364, 805, 1056, 1461
SsiI	CCGC	7 cut(s)	18, 246, 528, 684, 861, 1297, 1469
SspDI	GGCGCC	2 cut(s)	20, 960
SspMI	CTAG	2 cut(s)	798, 1215
SstI	GAGCTC	3 cut(s)	387, 1209, 1288
StyD4I	CCNGG	5 cut(s)	263, 563, 1123, 1318, 1433
StyI	CCWWGG	3 cut(s)	615, 1347, 1357
TaaI	ACNGT	1 cut(s)	1143
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	497, 555
TasI	AATT	6 cut(s)	283, 358, 364, 805, 1056, 1461
TatI	WGTACW	1 cut(s)	625
TauI	GCSGC	3 cut(s)	21, 687, 863
TfiI	GAWTC	3 cut(s)	499, 815, 1112
Tru1I	TTAA	7 cut(s)	207, 281, 389, 438, 1155, 1290, 1395
Tru9I	TTAA	7 cut(s)	207, 281, 389, 438, 1155, 1290, 1395
TscAI	CASTG	2 cut(s)	679, 904
TseFI	GTSAC	2 cut(s)	143, 895
Tsp45I	GTSAC	2 cut(s)	143, 895
TspDTI	ATGAA	3 cut(s)	47, 105, 437
TspGWI	ACGGA	2 cut(s)	249, 1199
TspRI	CASTG	2 cut(s)	679, 904
Tth111I	GACNNNGTC	2 cut(s)	115, 1320
VpaK11BI	GGWCC	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	1100
XapI	RAATTY	2 cut(s)	283, 805
XceI	RCATGY	2 cut(s)	997, 1303
XcmI	CCANNNNNNNNNTGG	2 cut(s)	671, 946
XspI	CTAG	2 cut(s)	798, 1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.