helix loop helix domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G12860 AT1G12860 AT1G12860 AT3G26744 AT3G26744 AT3G26744 AT3G26744 AT3G26744 |
| fragaria_vesca | FvH4_5g09300 FvH4_5g09300 |
| malus_domestica | MD06G1132200.v1.1 MD09G1003800.v1.1 MD14G1148600.v1.1 MD17G1007400.v1.1 |
| prunus_persica | Prupe.3G312800_v2.0.a1 Prupe.3G312800_v2.0.a1 Prupe.5G143200_v2.0.a1 |
| pyrus_communis | pycom06g12380 pycom111g00280 pycom14g12340 pycom17g00300 |
| rosa_chinensis | RchiOBHm_Chr2g0176421 RchiOBHm_Chr7g0188921 |
| rosa_laevigata | RLG00000004651 RLG00000022412 |
| rosa_multiflora | Rmu_co8326225.1_g000001 Rmu_co8487291.1_g000001 Rmu_sc0009140.1_g000010 Rmu_sc0011904.1_g000015 Rmu_ssc0000113.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00076450 Rroxscaffold_3G00265940 |
| rosa_rugosa | Rorug02G0594200 Rorug02G0594200 Rorug06G0494600 |
| rosa_samantha | Rh2AG672700 Rh2BG684200 Rh2CG647000 Rh2DG697800 Rh7AG099500 Rh7BG101600 Rh7CG102900 Rh7DG101300 |
| rosa_wichuraiana | Rw2G055180 Rw7G008570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 20 |
| AclWI | GGATC | 1 cut(s) | 1154 |
| AcoI | YGGCCR | 1 cut(s) | 996 |
| AcsI | RAATTY | 2 cut(s) | 739, 781 |
| AcyI | GRCGYC | 2 cut(s) | 21, 1097 |
| AfaI | GTAC | 4 cut(s) | 170, 582, 1071, 1524 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 667, 668, 764, 1107, 1414 |
| AflIII | ACRYGT | 1 cut(s) | 1350 |
| AgsI | TTSAA | 5 cut(s) | 138, 145, 853, 1206, 1447 |
| AhlI | ACTAGT | 1 cut(s) | 772 |
| AjnI | CCWGG | 2 cut(s) | 405, 1369 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1481, 1513 |
| Alw21I | GWGCWC | 4 cut(s) | 631, 676, 882, 1363 |
| Alw26I | GTCTC | 3 cut(s) | 33, 1360, 1379 |
| AlwI | GGATC | 1 cut(s) | 1154 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 637 |
| Ama87I | CYCGRG | 1 cut(s) | 515 |
| AoxI | GGCC | 3 cut(s) | 753, 996, 1395 |
| ApeKI | GCWGC | 5 cut(s) | 411, 556, 634, 1195, 1440 |
| ApoI | RAATTY | 2 cut(s) | 739, 781 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 584, 616 |
| AseI | ATTAAT | 1 cut(s) | 149 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 925 |
| AspLEI | GCGC | 4 cut(s) | 23, 53, 533, 699 |
| AspS9I | GGNCC | 3 cut(s) | 63, 754, 1395 |
| AsuHPI | GGTGA | 5 cut(s) | 173, 728, 827, 940, 977 |
| AsuII | TTCGAA | 2 cut(s) | 603, 929 |
| AvaI | CYCGRG | 1 cut(s) | 515 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BanI | GGYRCC | 1 cut(s) | 20 |
| BanII | GRGCYC | 1 cut(s) | 434 |
| Bbv12I | GWGCWC | 4 cut(s) | 631, 676, 882, 1363 |
| BbvI | GCAGC | 5 cut(s) | 398, 543, 621, 1182, 1427 |
| BccI | CCATC | 7 cut(s) | 25, 499, 608, 713, 1003, 1081, 1243 |
| BceAI | ACGGC | 4 cut(s) | 64, 498, 604, 1236 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 535, 569 |
| BciT130I | CCWGG | 2 cut(s) | 407, 1371 |
| BclI | TGATCA | 1 cut(s) | 1434 |
| BcoDI | GTCTC | 3 cut(s) | 33, 1360, 1379 |
| BcuI | ACTAGT | 1 cut(s) | 772 |
| BfaI | CTAG | 3 cut(s) | 773, 1106, 1185 |
| BfoI | RGCGCY | 3 cut(s) | 24, 534, 700 |
| BisI | GCNGC | 9 cut(s) | 19, 24, 320, 412, 557, 635, 700, 1196, 1441 |
| BlpI | GCTNAGC | 4 cut(s) | 630, 648, 675, 1476 |
| BlsI | GCNGC | 9 cut(s) | 20, 25, 321, 413, 558, 636, 701, 1197, 1442 |
| BmcAI | AGTACT | 1 cut(s) | 1524 |
| Bme1390I | CCNGG | 2 cut(s) | 407, 1371 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmeT110I | CYCGRG | 1 cut(s) | 515 |
| BmgT120I | GGNCC | 3 cut(s) | 63, 754, 1395 |
| BmiI | GGNNCC | 4 cut(s) | 22, 433, 619, 756 |
| BmrFI | CCNGG | 2 cut(s) | 407, 1371 |
| BmsI | GCATC | 1 cut(s) | 1102 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1058 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 630, 648, 675, 1476 |
| Bpu14I | TTCGAA | 2 cut(s) | 603, 929 |
| BpuEI | CTTGAG | 1 cut(s) | 183 |
| BsaHI | GRCGYC | 2 cut(s) | 21, 1097 |
| BsaI | GGTCTC | 2 cut(s) | 1360, 1379 |
| BsaJI | CCNNGG | 3 cut(s) | 406, 666, 1398 |
| BsaWI | WCCGGW | 1 cut(s) | 950 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 254, 284, 759, 789, 1216, 1246, 1357, 1387 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 667, 668, 764, 1107, 1414 |
| Bse118I | RCCGGY | 2 cut(s) | 623, 994 |
| Bse1I | ACTGG | 3 cut(s) | 170, 560, 1495 |
| Bse3DI | GCAATG | 1 cut(s) | 60 |
| BseBI | CCWGG | 2 cut(s) | 407, 1371 |
| BseDI | CCNNGG | 3 cut(s) | 406, 666, 1398 |
| BseGI | GGATG | 7 cut(s) | 36, 844, 1117, 1216, 1235, 1419, 1435 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 667, 668, 764, 1107, 1414 |
| BseMI | GCAATG | 1 cut(s) | 60 |
| BseMII | CTCAG | 6 cut(s) | 109, 199, 515, 644, 689, 1467 |
| BseNI | ACTGG | 3 cut(s) | 170, 560, 1495 |
| BseRI | GAGGAG | 6 cut(s) | 240, 259, 346, 353, 824, 1033 |
| BseXI | GCAGC | 5 cut(s) | 398, 543, 621, 1182, 1427 |
| BseYI | CCCAGC | 2 cut(s) | 193, 419 |
| BsgI | GTGCAG | 3 cut(s) | 225, 925, 1504 |
| BshFI | GGCC | 3 cut(s) | 755, 998, 1397 |
| BshNI | GGYRCC | 1 cut(s) | 20 |
| BsiHKAI | GWGCWC | 4 cut(s) | 631, 676, 882, 1363 |
| BsiHKCI | CYCGRG | 1 cut(s) | 515 |
| BsiSI | CCGG | 4 cut(s) | 542, 624, 951, 995 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 667, 668, 764, 1107, 1414 |
| BsmAI | GTCTC | 3 cut(s) | 33, 1360, 1379 |
| BsmBI | CGTCTC | 1 cut(s) | 33 |
| BsmI | GAATGC | 2 cut(s) | 296, 937 |
| BsnI | GGCC | 3 cut(s) | 755, 998, 1397 |
| Bso31I | GGTCTC | 2 cut(s) | 1360, 1379 |
| BsoBI | CYCGRG | 1 cut(s) | 515 |
| Bsp119I | TTCGAA | 2 cut(s) | 603, 929 |
| Bsp1286I | GDGCHC | 5 cut(s) | 434, 631, 676, 882, 1363 |
| Bsp143I | GATC | 4 cut(s) | 106, 1146, 1386, 1434 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 630, 648, 675, 1476 |
| Bsp19I | CCATGG | 1 cut(s) | 666 |
| BspANI | GGCC | 3 cut(s) | 755, 998, 1397 |
| BspCNI | CTCAG | 6 cut(s) | 108, 198, 514, 643, 688, 1468 |
| BspHI | TCATGA | 1 cut(s) | 1389 |
| BspLI | GGNNCC | 4 cut(s) | 22, 433, 619, 756 |
| BspPI | GGATC | 1 cut(s) | 1154 |
| BspT104I | TTCGAA | 2 cut(s) | 603, 929 |
| BspT107I | GGYRCC | 1 cut(s) | 20 |
| BspTNI | GGTCTC | 2 cut(s) | 1360, 1379 |
| BsrDI | GCAATG | 1 cut(s) | 60 |
| BsrFI | RCCGGY | 2 cut(s) | 623, 994 |
| BsrI | ACTGG | 3 cut(s) | 170, 560, 1495 |
| BssAI | RCCGGY | 2 cut(s) | 623, 994 |
| BssECI | CCNNGG | 3 cut(s) | 406, 666, 1398 |
| BssMI | GATC | 4 cut(s) | 106, 1146, 1386, 1434 |
| BssNI | GRCGYC | 2 cut(s) | 21, 1097 |
| BssT1I | CCWWGG | 2 cut(s) | 666, 1398 |
| Bst2UI | CCWGG | 2 cut(s) | 407, 1371 |
| Bst4CI | ACNGT | 4 cut(s) | 83, 884, 946, 1339 |
| Bst6I | CTCTTC | 5 cut(s) | 223, 471, 794, 822, 1257 |
| BstACI | GRCGYC | 2 cut(s) | 21, 1097 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 334 |
| BstBI | TTCGAA | 2 cut(s) | 603, 929 |
| BstC8I | GCNNGC | 2 cut(s) | 294, 996 |
| BstDEI | CTNAG | 8 cut(s) | 95, 185, 501, 630, 648, 675, 1058, 1476 |
| BstDSI | CCRYGG | 1 cut(s) | 666 |
| BstEII | GGTNACC | 1 cut(s) | 965 |
| BstF5I | GGATG | 7 cut(s) | 36, 844, 1117, 1216, 1235, 1419, 1435 |
| BstH2I | RGCGCY | 3 cut(s) | 24, 534, 700 |
| BstHHI | GCGC | 4 cut(s) | 23, 53, 533, 699 |
| BstKTI | GATC | 4 cut(s) | 109, 1149, 1389, 1437 |
| BstMAI | GTCTC | 3 cut(s) | 33, 1360, 1379 |
| BstMBI | GATC | 4 cut(s) | 106, 1146, 1386, 1434 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 325, 334, 597, 606, 615, 1054 |
| BstNI | CCWGG | 2 cut(s) | 407, 1371 |
| BstNSI | RCATGY | 2 cut(s) | 1057, 1354 |
| BstPI | GGTNACC | 1 cut(s) | 965 |
| BstSCI | CCNGG | 2 cut(s) | 405, 1369 |
| BstV1I | GCAGC | 5 cut(s) | 398, 543, 621, 1182, 1427 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 710 |
| BsuRI | GGCC | 3 cut(s) | 755, 998, 1397 |
| BtgI | CCRYGG | 1 cut(s) | 666 |
| BtsCI | GGATG | 7 cut(s) | 36, 844, 1117, 1216, 1235, 1419, 1435 |
| BtsI | GCAGTG | 1 cut(s) | 1487 |
| BtsIMutI | CAGTG | 4 cut(s) | 88, 567, 942, 1487 |
| Cac8I | GCNNGC | 2 cut(s) | 294, 996 |
| CaiI | CAGNNNCTG | 1 cut(s) | 637 |
| CciI | TCATGA | 1 cut(s) | 1389 |
| CfoI | GCGC | 4 cut(s) | 23, 53, 533, 699 |
| Cfr10I | RCCGGY | 2 cut(s) | 623, 994 |
| Cfr13I | GGNCC | 3 cut(s) | 63, 754, 1395 |
| CseI | GACGC | 2 cut(s) | 425, 1086 |
| CsiI | ACCWGGT | 1 cut(s) | 1369 |
| Csp6I | GTAC | 4 cut(s) | 169, 581, 1070, 1523 |
| CviAII | CATG | 5 cut(s) | 209, 667, 1054, 1351, 1390 |
| CviQI | GTAC | 4 cut(s) | 169, 581, 1070, 1523 |
| DdeI | CTNAG | 8 cut(s) | 95, 185, 501, 630, 648, 675, 1058, 1476 |
| DinI | GGCGCC | 1 cut(s) | 22 |
| DpnI | GATC | 4 cut(s) | 108, 1148, 1388, 1436 |
| DpnII | GATC | 4 cut(s) | 106, 1146, 1386, 1434 |
| EaeI | YGGCCR | 1 cut(s) | 996 |
| Eam1104I | CTCTTC | 5 cut(s) | 223, 471, 794, 822, 1257 |
| EarI | CTCTTC | 5 cut(s) | 223, 471, 794, 822, 1257 |
| EciI | GGCGGA | 5 cut(s) | 51, 262, 610, 1028, 1039 |
| Eco130I | CCWWGG | 2 cut(s) | 666, 1398 |
| Eco24I | GRGCYC | 1 cut(s) | 434 |
| Eco31I | GGTCTC | 2 cut(s) | 1360, 1379 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| Eco88I | CYCGRG | 1 cut(s) | 515 |
| Eco91I | GGTNACC | 1 cut(s) | 965 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1395 |
| EcoO65I | GGTNACC | 1 cut(s) | 965 |
| EcoRII | CCWGG | 2 cut(s) | 405, 1369 |
| EcoT14I | CCWWGG | 2 cut(s) | 666, 1398 |
| EcoT38I | GRGCYC | 1 cut(s) | 434 |
| EgeI | GGCGCC | 1 cut(s) | 22 |
| EheI | GGCGCC | 1 cut(s) | 22 |
| ErhI | CCWWGG | 2 cut(s) | 666, 1398 |
| Esp3I | CGTCTC | 1 cut(s) | 33 |
| FaeI | CATG | 5 cut(s) | 212, 670, 1057, 1354, 1393 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1509, 1541 |
| FatI | CATG | 5 cut(s) | 208, 666, 1053, 1350, 1389 |
| FbaI | TGATCA | 1 cut(s) | 1434 |
| Fnu4HI | GCNGC | 9 cut(s) | 19, 24, 320, 412, 557, 635, 700, 1196, 1441 |
| FokI | GGATG | 7 cut(s) | 43, 851, 1124, 1203, 1222, 1406, 1442 |
| FriOI | GRGCYC | 1 cut(s) | 434 |
| Fsp4HI | GCNGC | 9 cut(s) | 19, 24, 320, 412, 557, 635, 700, 1196, 1441 |
| FspBI | CTAG | 3 cut(s) | 773, 1106, 1185 |
| GlaI | GCGC | 4 cut(s) | 22, 52, 532, 698 |
| GluI | GCNGC | 9 cut(s) | 19, 24, 320, 412, 557, 635, 700, 1196, 1441 |
| GsaI | CCCAGC | 2 cut(s) | 197, 423 |
| HaeII | RGCGCY | 3 cut(s) | 24, 534, 700 |
| HaeIII | GGCC | 3 cut(s) | 755, 998, 1397 |
| HapII | CCGG | 4 cut(s) | 542, 624, 951, 995 |
| HgaI | GACGC | 2 cut(s) | 425, 1086 |
| HhaI | GCGC | 4 cut(s) | 23, 53, 533, 699 |
| Hin1I | GRCGYC | 2 cut(s) | 21, 1097 |
| Hin1II | CATG | 5 cut(s) | 212, 670, 1057, 1354, 1393 |
| Hin6I | GCGC | 4 cut(s) | 21, 51, 531, 697 |
| HinP1I | GCGC | 4 cut(s) | 21, 51, 531, 697 |
| HincII | GTYRAC | 1 cut(s) | 1224 |
| HindII | GTYRAC | 1 cut(s) | 1224 |
| HindIII | AAGCTT | 2 cut(s) | 228, 1210 |
| HinfI | GANTC | 7 cut(s) | 113, 266, 547, 832, 860, 1172, 1532 |
| HpaII | CCGG | 4 cut(s) | 542, 624, 951, 995 |
| HphI | GGTGA | 5 cut(s) | 173, 728, 827, 940, 977 |
| Hpy166II | GTNNAC | 2 cut(s) | 171, 1224 |
| Hpy188I | TCNGA | 6 cut(s) | 98, 235, 471, 504, 1008, 1365 |
| Hpy188III | TCNNGA | 8 cut(s) | 110, 200, 305, 515, 691, 836, 1384, 1390 |
| Hpy8I | GTNNAC | 2 cut(s) | 171, 1224 |
| Hpy99I | CGWCG | 4 cut(s) | 292, 374, 419, 590 |
| HpyCH4III | ACNGT | 4 cut(s) | 83, 884, 946, 1339 |
| HpyCH4IV | ACGT | 1 cut(s) | 369 |
| HpyCH4V | TGCA | 6 cut(s) | 242, 256, 942, 1115, 1128, 1485 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 325, 334, 597, 606, 615, 1054 |
| HpyF3I | CTNAG | 8 cut(s) | 95, 185, 501, 630, 648, 675, 1058, 1476 |
| HpySE526I | ACGT | 1 cut(s) | 369 |
| Hsp92I | GRCGYC | 2 cut(s) | 21, 1097 |
| Hsp92II | CATG | 5 cut(s) | 212, 670, 1057, 1354, 1393 |
| HspAI | GCGC | 4 cut(s) | 21, 51, 531, 697 |
| KasI | GGCGCC | 1 cut(s) | 20 |
| KroI | GCCGGC | 1 cut(s) | 994 |
| KroNI | GCCGGC | 1 cut(s) | 996 |
| Ksp22I | TGATCA | 1 cut(s) | 1434 |
| Kzo9I | GATC | 4 cut(s) | 106, 1146, 1386, 1434 |
| LmnI | GCTCC | 8 cut(s) | 125, 253, 383, 437, 623, 657, 1183, 1283 |
| Lsp1109I | GCAGC | 5 cut(s) | 398, 543, 621, 1182, 1427 |
| LweI | GCATC | 1 cut(s) | 1102 |
| MabI | ACCWGGT | 1 cut(s) | 1369 |
| MaeI | CTAG | 3 cut(s) | 773, 1106, 1185 |
| MaeII | ACGT | 1 cut(s) | 369 |
| MaeIII | GTNAC | 5 cut(s) | 161, 508, 562, 946, 965 |
| MalI | GATC | 4 cut(s) | 108, 1148, 1388, 1436 |
| MboI | GATC | 4 cut(s) | 106, 1146, 1386, 1434 |
| MfeI | CAATTG | 1 cut(s) | 1116 |
| MhlI | GDGCHC | 5 cut(s) | 434, 631, 676, 882, 1363 |
| MluCI | AATT | 9 cut(s) | 146, 457, 490, 731, 739, 781, 853, 925, 1116 |
| Mly113I | GGCGCC | 1 cut(s) | 21 |
| MlyI | GAGTC | 4 cut(s) | 260, 556, 841, 854 |
| MmeI | TCCRAC | 1 cut(s) | 405 |
| MroNI | GCCGGC | 1 cut(s) | 994 |
| MroXI | GAANNNNTTC | 1 cut(s) | 925 |
| MseI | TTAA | 3 cut(s) | 149, 873, 1341 |
| MspA1I | CMGCKG | 4 cut(s) | 18, 634, 1440, 1538 |
| MspI | CCGG | 4 cut(s) | 542, 624, 951, 995 |
| MspR9I | CCNGG | 2 cut(s) | 407, 1371 |
| MunI | CAATTG | 1 cut(s) | 1116 |
| Mva1269I | GAATGC | 2 cut(s) | 296, 937 |
| MvaI | CCWGG | 2 cut(s) | 407, 1371 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 325, 334, 597, 606, 615, 1054 |
| NaeI | GCCGGC | 1 cut(s) | 996 |
| NarI | GGCGCC | 1 cut(s) | 21 |
| NcoI | CCATGG | 1 cut(s) | 666 |
| NdeII | GATC | 4 cut(s) | 106, 1146, 1386, 1434 |
| NgoMIV | GCCGGC | 1 cut(s) | 994 |
| NlaIII | CATG | 5 cut(s) | 212, 670, 1057, 1354, 1393 |
| NlaIV | GGNNCC | 4 cut(s) | 22, 433, 619, 756 |
| NmeAIII | GCCGAG | 1 cut(s) | 559 |
| NmuCI | GTSAC | 4 cut(s) | 161, 562, 946, 965 |
| NspI | RCATGY | 2 cut(s) | 1057, 1354 |
| NspV | TTCGAA | 2 cut(s) | 603, 929 |
| PagI | TCATGA | 1 cut(s) | 1389 |
| PciI | ACATGT | 1 cut(s) | 1350 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 609 |
| PctI | GAATGC | 2 cut(s) | 296, 937 |
| PdiI | GCCGGC | 1 cut(s) | 996 |
| PdmI | GAANNNNTTC | 1 cut(s) | 925 |
| PfeI | GAWTC | 3 cut(s) | 113, 1172, 1532 |
| PflFI | GACNNNGTC | 1 cut(s) | 1371 |
| PkrI | GCNGC | 9 cut(s) | 20, 25, 321, 413, 558, 636, 701, 1197, 1442 |
| PleI | GAGTC | 4 cut(s) | 260, 555, 840, 854 |
| PluTI | GGCGCC | 1 cut(s) | 24 |
| PpsI | GAGTC | 4 cut(s) | 260, 555, 840, 854 |
| PscI | ACATGT | 1 cut(s) | 1350 |
| PshBI | ATTAAT | 1 cut(s) | 149 |
| Psp6I | CCWGG | 2 cut(s) | 405, 1369 |
| PspEI | GGTNACC | 1 cut(s) | 965 |
| PspFI | CCCAGC | 2 cut(s) | 193, 419 |
| PspGI | CCWGG | 2 cut(s) | 405, 1369 |
| PspN4I | GGNNCC | 4 cut(s) | 22, 433, 619, 756 |
| PspPI | GGNCC | 3 cut(s) | 63, 754, 1395 |
| PstNI | CAGNNNCTG | 1 cut(s) | 637 |
| PsyI | GACNNNGTC | 1 cut(s) | 1371 |
| PvuII | CAGCTG | 3 cut(s) | 634, 1440, 1538 |
| RsaI | GTAC | 4 cut(s) | 170, 582, 1071, 1524 |
| RsaNI | GTAC | 4 cut(s) | 169, 581, 1070, 1523 |
| SaqAI | TTAA | 3 cut(s) | 149, 873, 1341 |
| SatI | GCNGC | 9 cut(s) | 19, 24, 320, 412, 557, 635, 700, 1196, 1441 |
| Sau3AI | GATC | 4 cut(s) | 106, 1146, 1386, 1434 |
| Sau96I | GGNCC | 3 cut(s) | 63, 754, 1395 |
| ScaI | AGTACT | 1 cut(s) | 1524 |
| SchI | GAGTC | 4 cut(s) | 260, 556, 841, 854 |
| ScrFI | CCNGG | 2 cut(s) | 407, 1371 |
| SduI | GDGCHC | 5 cut(s) | 434, 631, 676, 882, 1363 |
| SexAI | ACCWGGT | 1 cut(s) | 1369 |
| SfaNI | GCATC | 1 cut(s) | 1102 |
| SfoI | GGCGCC | 1 cut(s) | 22 |
| SfuI | TTCGAA | 2 cut(s) | 603, 929 |
| SgrAI | CRCCGGYG | 1 cut(s) | 623 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmlI | CTYRAG | 1 cut(s) | 198 |
| SmoI | CTYRAG | 1 cut(s) | 198 |
| SpeI | ACTAGT | 1 cut(s) | 772 |
| Sse9I | AATT | 9 cut(s) | 146, 457, 490, 731, 739, 781, 853, 925, 1116 |
| SspDI | GGCGCC | 1 cut(s) | 20 |
| SspI | AATATT | 1 cut(s) | 1552 |
| SspMI | CTAG | 3 cut(s) | 773, 1106, 1185 |
| StyD4I | CCNGG | 2 cut(s) | 405, 1369 |
| StyI | CCWWGG | 2 cut(s) | 666, 1398 |
| TaaI | ACNGT | 4 cut(s) | 83, 884, 946, 1339 |
| TaiI | ACGT | 1 cut(s) | 372 |
| TaqII | GACCGA | 1 cut(s) | 581 |
| TasI | AATT | 9 cut(s) | 146, 457, 490, 731, 739, 781, 853, 925, 1116 |
| TatI | WGTACW | 2 cut(s) | 580, 1522 |
| TauI | GCSGC | 4 cut(s) | 21, 26, 322, 702 |
| TfiI | GAWTC | 3 cut(s) | 113, 1172, 1532 |
| Tru1I | TTAA | 3 cut(s) | 149, 873, 1341 |
| Tru9I | TTAA | 3 cut(s) | 149, 873, 1341 |
| TscAI | CASTG | 4 cut(s) | 88, 567, 949, 1487 |
| TseFI | GTSAC | 4 cut(s) | 161, 562, 946, 965 |
| TseI | GCWGC | 5 cut(s) | 411, 556, 634, 1195, 1440 |
| Tsp45I | GTSAC | 4 cut(s) | 161, 562, 946, 965 |
| TspDTI | ATGAA | 2 cut(s) | 1205, 1535 |
| TspGWI | ACGGA | 3 cut(s) | 276, 780, 1209 |
| TspRI | CASTG | 4 cut(s) | 88, 567, 949, 1487 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1371 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| VspI | ATTAAT | 1 cut(s) | 149 |
| XapI | RAATTY | 2 cut(s) | 739, 781 |
| XceI | RCATGY | 2 cut(s) | 1057, 1354 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1006 |
| XmnI | GAANNNNTTC | 1 cut(s) | 925 |
| XspI | CTAG | 3 cut(s) | 773, 1106, 1185 |
| ZrmI | AGTACT | 1 cut(s) | 1524 |