AT1G14320

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003864
Physical Location & Seq
Forward (+)
4888114 .. 4889704
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14320.2

Sequence Viewer

Length: 663 bp
ATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAAAGTCTCGCTACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGTATGAAGAGGAAGGGTGTTGATGAGTTTCCATTCTGTGTCCATTTGGTGTCATGGGAGAAGGAGAATGTGTCAAGTGAAGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGGTGAAGTCTGCTGGAAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTGGTAAAGCTTTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGTTCGTTGCAAGGATGCCCATGGTCACCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGCTTCACGAAGTTTAACAGAGCTGACTTCACCAAGTTGAGGCAAGAGAAGCGTGTTGTCCCTGATGGTGTCAACGCTAAGTTCCTCTCATGCCATGGACCTTTGGCTAACCGTCAGCCGGGAAGTGCCTTTTTGCCAGCCCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009941 GO:0009987 GO:0010224 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034644 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0070013 GO:0070925 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098542 GO:0098588 GO:0098805 GO:0104004 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L16

Protein Analysis

220

Amino Acids

24.92

Weight (kDa)

10.5

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AclWI GGATC 2 cut(s) 77, 104
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 2 cut(s) 224, 373
AfiI CCNNNNNNNGG 2 cut(s) 552, 631
AgsI TTSAA 2 cut(s) 197, 472
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 4 cut(s) 200, 323, 365, 536
AluI AGCT 4 cut(s) 200, 323, 365, 536
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 2 cut(s) 77, 104
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 611
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 3 cut(s) 241, 428, 535
AvaII GGWCC 1 cut(s) 611
BauI CACGAG 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 572
BciT130I CCWGG 1 cut(s) 480
BcnI CCSGG 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 480, 633
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 1 cut(s) 611
BmrFI CCNGG 2 cut(s) 480, 633
BmsI GCATC 3 cut(s) 238, 294, 415
BpiI GAAGAC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 429
BpuMI CCSGG 1 cut(s) 633
BsaJI CCNNGG 3 cut(s) 430, 478, 607
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 552, 631
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 3 cut(s) 430, 478, 607
BseGI GGATG 2 cut(s) 274, 430
BseLI CCNNNNNNNGG 2 cut(s) 552, 631
BseMII CTCAG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 382
BsiSI CCGG 1 cut(s) 632
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 2 cut(s) 552, 631
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 3 cut(s) 33, 82, 96
Bsp19I CCATGG 2 cut(s) 430, 607
BspCNI CTCAG 1 cut(s) 303
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 2 cut(s) 77, 104
BspQI GCTCTTC 1 cut(s) 459
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 3 cut(s) 430, 478, 607
BssMI GATC 3 cut(s) 33, 82, 96
BssSI CACGAG 1 cut(s) 381
BssT1I CCWWGG 2 cut(s) 430, 607
Bst2BI CACGAG 1 cut(s) 381
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 3 cut(s) 29, 68, 626
Bst6I CTCTTC 2 cut(s) 110, 459
BstC8I GCNNGC 2 cut(s) 214, 651
BstDEI CTNAG 3 cut(s) 290, 465, 591
BstDSI CCRYGG 2 cut(s) 430, 607
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 2 cut(s) 274, 430
BstKTI GATC 3 cut(s) 36, 85, 99
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 3 cut(s) 33, 82, 96
BstMWI GCNNNNNNNGC 5 cut(s) 197, 209, 386, 449, 562
BstNI CCWGG 1 cut(s) 480
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 478, 631
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 2 cut(s) 82, 96
BstYI RGATCY 2 cut(s) 82, 96
BtgI CCRYGG 2 cut(s) 430, 607
BtsCI GGATG 2 cut(s) 274, 430
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 214, 651
Cfr13I GGNCC 1 cut(s) 611
Csp6I GTAC 2 cut(s) 223, 372
CviAII CATG 7 cut(s) 162, 226, 284, 431, 440, 603, 608
CviQI GTAC 2 cut(s) 223, 372
DdeI CTNAG 3 cut(s) 290, 465, 591
DpnI GATC 3 cut(s) 35, 84, 98
DpnII GATC 3 cut(s) 33, 82, 96
Eam1104I CTCTTC 2 cut(s) 110, 459
EarI CTCTTC 2 cut(s) 110, 459
Eco130I CCWWGG 2 cut(s) 430, 607
Eco47I GGWCC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 317
Eco91I GGTNACC 1 cut(s) 434
EcoO65I GGTNACC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 430, 607
ErhI CCWWGG 2 cut(s) 430, 607
FaeI CATG 7 cut(s) 165, 229, 287, 434, 443, 606, 611
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FaqI GGGAC 1 cut(s) 557
FatI CATG 7 cut(s) 161, 225, 283, 430, 439, 602, 607
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 2 cut(s) 261, 437
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 339
HapII CCGG 1 cut(s) 632
Hin1II CATG 7 cut(s) 165, 229, 287, 434, 443, 606, 611
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 363
HpaII CCGG 1 cut(s) 632
HphI GGTGA 3 cut(s) 241, 428, 535
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 2 cut(s) 33, 336
Hpy188III TCNNGA 4 cut(s) 94, 292, 446, 520
Hpy8I GTNNAC 1 cut(s) 586
Hpy99I CGWCG 1 cut(s) 462
HpyAV CCTTC 2 cut(s) 115, 163
HpyCH4III ACNGT 3 cut(s) 29, 68, 626
HpyCH4V TGCA 2 cut(s) 216, 420
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 209, 386, 449, 562
HpyF3I CTNAG 3 cut(s) 290, 465, 591
Hsp92II CATG 7 cut(s) 165, 229, 287, 434, 443, 606, 611
Kzo9I GATC 3 cut(s) 33, 82, 96
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 3 cut(s) 238, 294, 415
MaeIII GTNAC 2 cut(s) 23, 434
MalI GATC 3 cut(s) 35, 84, 98
MboI GATC 3 cut(s) 33, 82, 96
MboII GAAGA 4 cut(s) 18, 21, 127, 446
MflI RGATCY 2 cut(s) 82, 96
MhlI GDGCHC 1 cut(s) 382
MnlI CCTC 7 cut(s) 12, 111, 255, 341, 442, 546, 608
MseI TTAA 2 cut(s) 297, 528
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 2 cut(s) 480, 633
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 5 cut(s) 197, 209, 386, 449, 562
NciI CCSGG 1 cut(s) 633
NcoI CCATGG 2 cut(s) 430, 607
NdeII GATC 3 cut(s) 33, 82, 96
NlaIII CATG 7 cut(s) 165, 229, 287, 434, 443, 606, 611
NmuCI GTSAC 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 478
PspEI GGTNACC 1 cut(s) 434
PspGI CCWGG 1 cut(s) 478
PspPI GGNCC 1 cut(s) 611
PsuI RGATCY 2 cut(s) 82, 96
RsaI GTAC 2 cut(s) 224, 373
RsaNI GTAC 2 cut(s) 223, 372
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 297, 528
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 3 cut(s) 33, 82, 96
Sau96I GGNCC 1 cut(s) 611
ScrFI CCNGG 2 cut(s) 480, 633
SduI GDGCHC 1 cut(s) 382
SetI ASST 9 cut(s) 16, 23, 202, 325, 352, 367, 402, 538, 616
SfaNI GCATC 3 cut(s) 238, 294, 415
SinI GGWCC 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 478, 631
StyI CCWWGG 2 cut(s) 430, 607
TaaI ACNGT 3 cut(s) 29, 68, 626
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 2 cut(s) 297, 528
Tru9I TTAA 2 cut(s) 297, 528
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 3 cut(s) 128, 245, 263
VpaK11BI GGWCC 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.