Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003864

Physical Location & Seq

Genomic Coordinates Reverse (-)

2927689 .. 2929069

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G039000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGACGAAGGCCAGCCAGGTGCTATCGCCAGATCAAGAACAAACCCTACCCGAAATCCCGTTTCTGCCGTGGTGTTCCGGACCCTAAGATCCGAATCTACGATGTGGGTATGAAGAAGAAGGGCGTGGATGAGTTTCCCTTCTGCATCCACCTCGTTTCTTGGGAGAAAGAAAATGTTTCGAGCGAAGCTCTCGAGGCCGCTCGTATCGCCTGCAACAAGTACATGGCCAAGTTCGCCGGAAAGGACACCTTTCATTTGCGAGTTAGGGTTCACCCCTTCCATGTTCTCAGGATCAACAAAATGCTTTCTTGTGCCGGAGCCGATAGGCTTCAGACTGGTATGAGAGGTGCTTTTGGGAAGCCCCTGGGTACTTGCGCTAGGGTTGATATTGGTCAGGTGCTTCTCTCTGTTCGTTGCAAAGATAGCAACAAGAACCATGCTCATGAGGCTCTCCGCCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGAGAGCAGGAAATGGGGCTTTACCAAGTTCAGCCGAGCTGACTATGTCAGGTTGAAGGCAGAGCATCGTATTGTTCCTGACGGTGTCAATGCCAAGCTTTTGGGATGCCATGGATCGTTGGCTTTGCGCCGTCCTGGAGGAGCATTCATTGATGCTGCTGTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

222

Amino Acids

25.02

Weight (kDa)

10.36

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14320 AT1G26910 AT1G26910 AT1G66580
fragaria_vesca	FvH4_3g40920 FvH4_7g26240 FvH4_7g26240
malus_domestica	MD01G1171100.v1.1 MD03G1048400.v1.1 MD11G1051200.v1.1
prunus_persica	Prupe.2G266600_v2.0.a1 Prupe.6G039000_v2.0.a1 Prupe.8G107100_v2.0.a1
pyrus_communis	pycom01g18330 pycom03g03810 pycom07g21380 pycom11g04100
rosa_chinensis	RchiOBHm_Chr1g0372691 RchiOBHm_Chr5g0073671
rosa_laevigata	RLG00000036403
rosa_multiflora	Rmu_co8347707.1_g000001 Rmu_sc0009248.1_g000005 Rmu_sc0009962.1_g000001 Rmu_sc0034231.1_g000001 Rmu_ssc0000419.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007630
rosa_rugosa	Rorug01G0373800 Rorug05G0425900
rosa_samantha	Rh1AG382400 Rh1BG345900 Rh1CG359200 Rh5DG515900
rosa_wichuraiana	Rw1G033640 Rw5G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	2 cut(s)	201, 457
AclWI	GGATC	3 cut(s)	85, 302, 619
AcoI	YGGCCR	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	2 cut(s)	224, 373
AgsI	TTSAA	2 cut(s)	472, 553
AjnI	CCWGG	4 cut(s)	17, 366, 478, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	3 cut(s)	191, 536, 595
AluI	AGCT	3 cut(s)	191, 536, 595
AlwI	GGATC	3 cut(s)	85, 302, 619
Ama87I	CYCGRG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	3 cut(s)	11, 198, 228
ApeKI	GCWGC	1 cut(s)	653
AspLEI	GCGC	2 cut(s)	380, 627
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	640
BceAI	ACGGC	3 cut(s)	54, 444, 612
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	4 cut(s)	19, 368, 480, 633
BfaI	CTAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	201, 654
BlsI	GCNGC	2 cut(s)	202, 655
Bme1390I	CCNGG	4 cut(s)	19, 368, 480, 633
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	84, 322
BmrFI	CCNGG	4 cut(s)	19, 368, 480, 633
BmsI	GCATC	4 cut(s)	156, 571, 593, 640
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	1 cut(s)	654
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	5 cut(s)	70, 366, 367, 478, 607
BsaWI	WCCGGW	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	95
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	4 cut(s)	19, 368, 480, 633
BseDI	CCNNGG	5 cut(s)	70, 366, 367, 478, 607
BseGI	GGATG	3 cut(s)	136, 147, 608
BseJI	GATNNNNATC	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	651
BseXI	GCAGC	1 cut(s)	640
BshFI	GGCC	3 cut(s)	13, 200, 230
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	3 cut(s)	80, 240, 318
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	641
BsnI	GGCC	3 cut(s)	13, 200, 230
BsoBI	CYCGRG	1 cut(s)	194
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	5 cut(s)	33, 90, 294, 492, 611
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	2 cut(s)	201, 457
BspANI	GGCC	3 cut(s)	13, 200, 230
BspCNI	CTCAG	1 cut(s)	303
BspEI	TCCGGA	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	84, 322
BspPI	GGATC	3 cut(s)	85, 302, 619
BsrBI	CCGCTC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	5 cut(s)	70, 366, 367, 478, 607
BssMI	GATC	5 cut(s)	33, 90, 294, 492, 611
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	4 cut(s)	19, 368, 480, 633
Bst4CI	ACNGT	1 cut(s)	581
BstC8I	GCNNGC	2 cut(s)	15, 214
BstDEI	CTNAG	2 cut(s)	87, 290
BstDSI	CCRYGG	2 cut(s)	70, 607
BstF5I	GGATG	3 cut(s)	136, 147, 608
BstHHI	GCGC	2 cut(s)	380, 627
BstKTI	GATC	5 cut(s)	36, 93, 297, 495, 614
BstMBI	GATC	5 cut(s)	33, 90, 294, 492, 611
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 209, 236, 426, 449
BstNI	CCWGG	4 cut(s)	19, 368, 480, 633
BstSCI	CCNGG	4 cut(s)	17, 366, 478, 631
BstV1I	GCAGC	1 cut(s)	640
BstX2I	RGATCY	1 cut(s)	90
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	13, 200, 230
BtgI	CCRYGG	2 cut(s)	70, 607
BtsCI	GGATG	3 cut(s)	136, 147, 608
Cac8I	GCNNGC	2 cut(s)	15, 214
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	2 cut(s)	380, 627
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	223, 372
CviAII	CATG	5 cut(s)	226, 284, 440, 446, 608
CviQI	GTAC	2 cut(s)	223, 372
DdeI	CTNAG	2 cut(s)	87, 290
DpnI	GATC	5 cut(s)	35, 92, 296, 494, 613
DpnII	GATC	5 cut(s)	33, 90, 294, 492, 611
EaeI	YGGCCR	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	194
EcoRII	CCWGG	4 cut(s)	17, 366, 478, 631
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	5 cut(s)	229, 287, 443, 449, 611
FaiI	YATR	8 cut(s)	113, 227, 285, 344, 441, 447, 543, 609
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	225, 283, 439, 445, 607
Fnu4HI	GCNGC	2 cut(s)	201, 654
FokI	GGATG	3 cut(s)	134, 143, 615
Fsp4HI	GCNGC	2 cut(s)	201, 654
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	2 cut(s)	379, 626
GluI	GCNGC	2 cut(s)	201, 654
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	3 cut(s)	13, 200, 230
HapII	CCGG	3 cut(s)	80, 240, 318
HhaI	GCGC	2 cut(s)	380, 627
Hin1II	CATG	5 cut(s)	229, 287, 443, 449, 611
Hin6I	GCGC	2 cut(s)	378, 625
HinP1I	GCGC	2 cut(s)	378, 625
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	3 cut(s)	80, 240, 318
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	274, 661
Hpy188I	TCNGA	2 cut(s)	95, 336
Hpy188III	TCNNGA	6 cut(s)	37, 80, 194, 292, 446, 575
Hpy8I	GTNNAC	2 cut(s)	274, 661
HpyAV	CCTTC	5 cut(s)	3, 115, 151, 289, 547
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4V	TGCA	3 cut(s)	147, 216, 420
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 209, 236, 426, 449
HpyF3I	CTNAG	2 cut(s)	87, 290
Hsp92II	CATG	5 cut(s)	229, 287, 443, 449, 611
HspAI	GCGC	2 cut(s)	378, 625
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	33, 90, 294, 492, 611
LmnI	GCTCC	2 cut(s)	320, 638
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	4 cut(s)	156, 571, 593, 640
MaeI	CTAG	1 cut(s)	381
MalI	GATC	5 cut(s)	35, 92, 296, 494, 613
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	5 cut(s)	33, 90, 294, 492, 611
MboII	GAAGA	2 cut(s)	127, 130
MflI	RGATCY	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	230
MnlI	CCTC	5 cut(s)	164, 190, 341, 442, 629
Mox20I	TGGCCA	1 cut(s)	230
MroI	TCCGGA	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	3 cut(s)	80, 240, 318
MspR9I	CCNGG	4 cut(s)	19, 368, 480, 633
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	4 cut(s)	19, 368, 480, 633
MwoI	GCNNNNNNNGC	5 cut(s)	197, 209, 236, 426, 449
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	5 cut(s)	33, 90, 294, 492, 611
NlaIII	CATG	5 cut(s)	229, 287, 443, 449, 611
NlaIV	GGNNCC	2 cut(s)	84, 322
NmeAIII	GCCGAG	1 cut(s)	557
PaeR7I	CTCGAG	1 cut(s)	194
PagI	TCATGA	1 cut(s)	445
PasI	CCCWGGG	1 cut(s)	367
PctI	GAATGC	1 cut(s)	641
PfeI	GAWTC	1 cut(s)	96
PflFI	GACNNNGTC	2 cut(s)	542, 581
PfoI	TCCNGGA	1 cut(s)	631
PkrI	GCNGC	2 cut(s)	202, 655
Psp6I	CCWGG	4 cut(s)	17, 366, 478, 631
PspGI	CCWGG	4 cut(s)	17, 366, 478, 631
PspN4I	GGNNCC	2 cut(s)	84, 322
PspPI	GGNCC	1 cut(s)	82
PsrI	GAACNNNNNNTAC	2 cut(s)	32, 64
PsuI	RGATCY	1 cut(s)	90
PsyI	GACNNNGTC	2 cut(s)	542, 581
RsaI	GTAC	2 cut(s)	224, 373
RsaNI	GTAC	2 cut(s)	223, 372
RseI	CAYNNNNRTG	1 cut(s)	444
SatI	GCNGC	2 cut(s)	201, 654
Sau3AI	GATC	5 cut(s)	33, 90, 294, 492, 611
Sau96I	GGNCC	1 cut(s)	82
ScrFI	CCNGG	4 cut(s)	19, 368, 480, 633
SetI	ASST	9 cut(s)	23, 156, 193, 254, 352, 402, 538, 551, 597
SfaNI	GCATC	4 cut(s)	156, 571, 593, 640
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	82
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SsiI	CCGC	2 cut(s)	201, 457
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	4 cut(s)	17, 366, 478, 631
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	1 cut(s)	581
TaqI	TCGA	2 cut(s)	182, 195
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	653
TspDTI	ATGAA	3 cut(s)	128, 245, 634
Tth111I	GACNNNGTC	2 cut(s)	542, 581
VpaK11BI	GGWCC	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.