AT1G26910

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003864
Physical Location & Seq
Forward (+)
9321650 .. 9323028
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26910.1

Sequence Viewer

Length: 666 bp
ATGGGACGAAGACCTGCGAGATGTTACCGTCAAATTAAGGGAAAGCCATACCCTAAATCAAGATACTGTCGTGGTGTTCCCGATCCTAAGATCAGGATTTACGATGTTGGTATGAAGAGGAAAGGAGTTGATGAGTTCCCTTACTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAAGTCTGCCGGGAAAGATGCGTTTCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTAGGATCAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTGCTTTTGGCAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATTGGACAGGTTCTTTTGTCTGTGAGGTGCAAAGATGCTCATGGTCATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGGTTCACCAAGTTTAACCGTGCTGATTACACAAAGCTAAGGCAAGAGAAGAGGATTGTCCCTGATGGTGTAAATGCCAAGTTCCTATCTTGCCATGGTCCGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTCAGCTGGTGCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000027 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009941 GO:0009987 GO:0010224 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034644 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0070013 GO:0070925 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098542 GO:0098588 GO:0098805 GO:0104004 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L16

Protein Analysis

221

Amino Acids

24.91

Weight (kDa)

10.45

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L16 PF00252 13 - 166 1.2e-35 Ribosomal protein L16p/L10e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AclWI GGATC 2 cut(s) 77, 302
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 2 cut(s) 224, 373
AgsI TTSAA 2 cut(s) 183, 197
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 6 cut(s) 191, 200, 323, 365, 550, 653
AluI AGCT 6 cut(s) 191, 200, 323, 365, 550, 653
Alw21I GWGCWC 1 cut(s) 661
Alw44I GTGCAC 1 cut(s) 657
AlwI GGATC 2 cut(s) 77, 302
ApaLI GTGCAC 1 cut(s) 657
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 611
AsuC2I CCSGG 2 cut(s) 241, 633
AsuHPI GGTGA 2 cut(s) 241, 511
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 661
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 661
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 572
BciT130I CCWGG 1 cut(s) 480
BcnI CCSGG 2 cut(s) 241, 633
BfaI CTAG 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 3 cut(s) 241, 480, 633
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 1 cut(s) 611
BmrFI CCNGG 3 cut(s) 241, 480, 633
BmsI GCATC 3 cut(s) 238, 294, 415
BpiI GAAGAC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 2 cut(s) 444, 551
BpuMI CCSGG 2 cut(s) 241, 633
BsaJI CCNNGG 2 cut(s) 478, 607
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 478, 607
BseGI GGATG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 1 cut(s) 343
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 2 cut(s) 240, 633
BslFI GGGAC 2 cut(s) 18, 557
BsmFI GGGAC 2 cut(s) 18, 557
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 4 cut(s) 82, 90, 294, 492
Bsp19I CCATGG 1 cut(s) 607
BspCNI CTCAG 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 2 cut(s) 77, 302
BspQI GCTCTTC 1 cut(s) 459
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 478, 607
BssMI GATC 4 cut(s) 82, 90, 294, 492
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 6 cut(s) 29, 68, 146, 533, 626, 663
Bst6I CTCTTC 3 cut(s) 110, 459, 557
BstDEI CTNAG 5 cut(s) 87, 290, 444, 465, 551
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 4 cut(s) 85, 93, 297, 495
BstMBI GATC 4 cut(s) 82, 90, 294, 492
BstMWI GCNNNNNNNGC 4 cut(s) 197, 209, 386, 449
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 3 cut(s) 239, 478, 631
BstSLI GKGCMC 1 cut(s) 661
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 607
BtsCI GGATG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 611
Csp6I GTAC 2 cut(s) 223, 372
CviAII CATG 6 cut(s) 162, 226, 284, 431, 440, 608
CviQI GTAC 2 cut(s) 223, 372
DdeI CTNAG 5 cut(s) 87, 290, 444, 465, 551
DpnI GATC 4 cut(s) 84, 92, 296, 494
DpnII GATC 4 cut(s) 82, 90, 294, 492
Eam1104I CTCTTC 3 cut(s) 110, 459, 557
EarI CTCTTC 3 cut(s) 110, 459, 557
Eco130I CCWWGG 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 6 cut(s) 165, 229, 287, 434, 443, 611
FaiI YATR 9 cut(s) 49, 113, 163, 227, 285, 344, 432, 441, 609
FaqI GGGAC 2 cut(s) 18, 557
FatI CATG 6 cut(s) 161, 225, 283, 430, 439, 607
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 381
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 339
HapII CCGG 2 cut(s) 240, 633
Hin1II CATG 6 cut(s) 165, 229, 287, 434, 443, 611
HpaII CCGG 2 cut(s) 240, 633
HphI GGTGA 2 cut(s) 241, 511
Hpy166II GTNNAC 2 cut(s) 519, 659
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 5 cut(s) 60, 80, 94, 194, 446
Hpy8I GTNNAC 2 cut(s) 519, 659
Hpy99I CGWCG 1 cut(s) 462
HpyCH4III ACNGT 6 cut(s) 29, 68, 146, 533, 626, 663
HpyCH4V TGCA 2 cut(s) 420, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 209, 386, 449
HpyF3I CTNAG 5 cut(s) 87, 290, 444, 465, 551
Hsp92II CATG 6 cut(s) 165, 229, 287, 434, 443, 611
Kzo9I GATC 4 cut(s) 82, 90, 294, 492
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 3 cut(s) 238, 294, 415
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 23, 215
MalI GATC 4 cut(s) 84, 92, 296, 494
MboI GATC 4 cut(s) 82, 90, 294, 492
MboII GAAGA 4 cut(s) 21, 127, 446, 574
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 1 cut(s) 33
MnlI CCTC 5 cut(s) 111, 341, 408, 442, 558
MseI TTAA 3 cut(s) 36, 471, 528
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 2 cut(s) 240, 633
MspR9I CCNGG 3 cut(s) 241, 480, 633
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 4 cut(s) 197, 209, 386, 449
NciI CCSGG 2 cut(s) 241, 633
NcoI CCATGG 1 cut(s) 607
NdeII GATC 4 cut(s) 82, 90, 294, 492
NlaIII CATG 6 cut(s) 165, 229, 287, 434, 443, 611
PciSI GCTCTTC 1 cut(s) 459
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspPI GGNCC 1 cut(s) 611
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 2 cut(s) 224, 373
RsaNI GTAC 2 cut(s) 223, 372
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 3 cut(s) 36, 471, 528
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 4 cut(s) 82, 90, 294, 492
Sau96I GGNCC 1 cut(s) 611
ScrFI CCNGG 3 cut(s) 241, 480, 633
SduI GDGCHC 1 cut(s) 661
SfaNI GCATC 3 cut(s) 238, 294, 415
SinI GGWCC 1 cut(s) 611
Sse9I AATT 1 cut(s) 33
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 239, 478, 631
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 6 cut(s) 29, 68, 146, 533, 626, 663
TasI AATT 1 cut(s) 33
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 3 cut(s) 36, 471, 528
Tru9I TTAA 3 cut(s) 36, 471, 528
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 5 cut(s) 128, 140, 150, 245, 263
TspGWI ACGGA 2 cut(s) 251, 603
VneI GTGCAC 1 cut(s) 657
VpaK11BI GGWCC 1 cut(s) 611
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.