Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8347707.1

Orthogroup ID

OG0003864

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 842

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8347707.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 607 bp

atgttgtcatgtttgtcaggacctgcgaggtgctaccgtcagatcaagaacaagccgtaccccaagtcacggttctgtcgtggtgtccctgatcctaagatcagaatttatgatgttgggatgaagaagaagggtgttgatgagttccccttctgtgtccatcttgtgagttgggagaaggaaaatgtgtcgagtgaggcgcttgaggctgctcgtattgcctgcaacaagtacatggctaagtatgctgggaaggatgcgttccatttgagagtcagggtgcatccgttccatgttctccgcatcaacaagatgctttcatgtgccggggctgataggctccagactggaatgaggggtgcttttggaaagccactaggaacatgtgctcgagttgctattggacaggttcttctttctgttcgctgcagggatgccaacggtcatcatgcacaggaggccctccgacgtgcaaagttcaagtttcctggtcgccaaaagatcatcgtcagcaggaagtggggattcaccaagtttaaccgtaatgattacgtgaagttcaaggctgagggcaaagttcaaccagatggtgttaatgctaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

202

Amino Acids

22.86

Weight (kDa)

10.2

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14320 AT1G26910 AT1G26910 AT1G66580
fragaria_vesca	FvH4_3g40920 FvH4_7g26240 FvH4_7g26240
malus_domestica	MD01G1171100.v1.1 MD03G1048400.v1.1 MD11G1051200.v1.1
prunus_persica	Prupe.2G266600_v2.0.a1 Prupe.6G039000_v2.0.a1 Prupe.8G107100_v2.0.a1
pyrus_communis	pycom01g18330 pycom03g03810 pycom07g21380 pycom11g04100
rosa_chinensis	RchiOBHm_Chr1g0372691 RchiOBHm_Chr5g0073671
rosa_laevigata	RLG00000036403
rosa_multiflora	Rmu_co8347707.1_g000001 Rmu_sc0009248.1_g000005 Rmu_sc0009962.1_g000001 Rmu_sc0034231.1_g000001 Rmu_ssc0000419.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007630
rosa_rugosa	Rorug01G0373800 Rorug05G0425900
rosa_samantha	Rh1AG382400 Rh1BG345900 Rh1CG359200 Rh5DG515900
rosa_wichuraiana	Rw1G033640 Rw5G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	105
AfaI	GTAC	2 cut(s)	59, 233
AfiI	CCNNNNNNNGG	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	481, 562, 581
AjiI	CACGTC	1 cut(s)	470
AjnI	CCWGG	1 cut(s)	487
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
Alw21I	GWGCWC	1 cut(s)	391
AlwI	GGATC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	2 cut(s)	209, 426
ApoI	RAATTY	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	20, 460
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	391
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	196, 413
BccI	CCATC	2 cut(s)	168, 581
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	328
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	210, 427
BlsI	GCNGC	2 cut(s)	211, 428
Bme1390I	CCNGG	2 cut(s)	328, 489
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	20, 460
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	2 cut(s)	328, 489
BmsI	GCATC	5 cut(s)	247, 292, 303, 312, 424
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	2 cut(s)	567, 600
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	553
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	4 cut(s)	126, 262, 283, 439
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	196, 413
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	461
BsoBI	CYCGRG	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	4 cut(s)	42, 91, 99, 501
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	341
BspMAI	CTGCAG	1 cut(s)	431
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	4 cut(s)	42, 91, 99, 501
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	4 cut(s)	38, 72, 443, 542
BstBAI	YACGTR	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	4 cut(s)	96, 240, 567, 600
BstF5I	GGATG	4 cut(s)	126, 262, 283, 439
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	4 cut(s)	45, 94, 102, 504
BstMBI	GATC	4 cut(s)	42, 91, 99, 501
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 218, 245, 395, 458
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	326, 487
BstSFI	CTRYAG	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	196, 413
BsuRI	GGCC	1 cut(s)	461
BtrI	CACGTC	1 cut(s)	470
BtsCI	GGATG	4 cut(s)	126, 262, 283, 439
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	20, 460
Csp6I	GTAC	2 cut(s)	58, 232
CviAII	CATG	6 cut(s)	9, 235, 293, 321, 384, 449
CviJI	RGCY	8 cut(s)	55, 209, 239, 332, 340, 373, 461, 566
CviKI_1	RGCY	8 cut(s)	55, 209, 239, 332, 340, 373, 461, 566
CviQI	GTAC	2 cut(s)	58, 232
DdeI	CTNAG	4 cut(s)	96, 240, 567, 600
DpnI	GATC	4 cut(s)	44, 93, 101, 503
DpnII	GATC	4 cut(s)	42, 91, 99, 501
Eco47I	GGWCC	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	390
EcoO109I	RGGNCCY	2 cut(s)	20, 460
EcoRII	CCWGG	1 cut(s)	487
FaeI	CATG	6 cut(s)	12, 238, 296, 324, 387, 452
FaiI	YATR	8 cut(s)	10, 111, 236, 246, 294, 322, 385, 450
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	6 cut(s)	8, 234, 292, 320, 383, 448
Fnu4HI	GCNGC	2 cut(s)	210, 427
FokI	GGATG	4 cut(s)	133, 269, 270, 446
Fsp4HI	GCNGC	2 cut(s)	210, 427
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	2 cut(s)	210, 427
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	1 cut(s)	327
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	6 cut(s)	12, 238, 296, 324, 387, 452
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	2 cut(s)	273, 525
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	520
Hpy188I	TCNGA	3 cut(s)	42, 104, 467
Hpy188III	TCNNGA	3 cut(s)	18, 46, 343
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	4 cut(s)	124, 160, 172, 247
HpyCH4III	ACNGT	4 cut(s)	38, 72, 443, 542
HpyCH4IV	ACGT	2 cut(s)	469, 552
HpyCH4V	TGCA	5 cut(s)	225, 283, 429, 452, 473
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 218, 245, 395, 458
HpyF3I	CTNAG	4 cut(s)	96, 240, 567, 600
HpySE526I	ACGT	2 cut(s)	469, 552
Hsp92II	CATG	6 cut(s)	12, 238, 296, 324, 387, 452
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	4 cut(s)	42, 91, 99, 501
LmnI	GCTCC	1 cut(s)	345
Lsp1109I	GCAGC	2 cut(s)	196, 413
LweI	GCATC	5 cut(s)	247, 292, 303, 312, 424
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	2 cut(s)	469, 552
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	4 cut(s)	44, 93, 101, 503
MboI	GATC	4 cut(s)	42, 91, 99, 501
MboII	GAAGA	3 cut(s)	136, 139, 404
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	7 cut(s)	21, 190, 199, 348, 451, 473, 562
MseI	TTAA	2 cut(s)	537, 594
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	328, 489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	5 cut(s)	206, 218, 245, 395, 458
NciI	CCSGG	1 cut(s)	328
NdeII	GATC	4 cut(s)	42, 91, 99, 501
NlaIII	CATG	6 cut(s)	12, 238, 296, 324, 387, 452
NlaIV	GGNNCC	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	390
PciI	ACATGT	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	525
PkrI	GCNGC	2 cut(s)	211, 428
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	553
PpuMI	RGGWCCY	1 cut(s)	20
PscI	ACATGT	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	2 cut(s)	20, 460
PspPPI	RGGWCCY	1 cut(s)	20
PspXI	VCTCGAGB	1 cut(s)	390
PsrI	GAACNNNNNNTAC	2 cut(s)	41, 73
PstI	CTGCAG	1 cut(s)	431
PstNI	CAGNNNCTG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	59, 233
RsaNI	GTAC	2 cut(s)	58, 232
SaqAI	TTAA	2 cut(s)	537, 594
SatI	GCNGC	2 cut(s)	210, 427
Sau3AI	GATC	4 cut(s)	42, 91, 99, 501
Sau96I	GGNCC	2 cut(s)	20, 460
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	328, 489
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	6 cut(s)	25, 32, 411, 472, 555, 606
SfaNI	GCATC	5 cut(s)	247, 292, 303, 312, 424
SfcI	CTRYAG	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	203, 390
SmoI	CTYRAG	2 cut(s)	203, 390
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	326, 487
TaaI	ACNGT	4 cut(s)	38, 72, 443, 542
TaiI	ACGT	2 cut(s)	472, 555
TaqI	TCGA	2 cut(s)	191, 391
TasI	AATT	1 cut(s)	105
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	525
Tru1I	TTAA	2 cut(s)	537, 594
Tru9I	TTAA	2 cut(s)	537, 594
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	2 cut(s)	209, 426
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	2 cut(s)	137, 309
TspGWI	ACGGA	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	105
XceI	RCATGY	1 cut(s)	387
XhoI	CTCGAG	1 cut(s)	390
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.