RchiOBHm_Chr1g0372691

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003864
Physical Location & Seq
Reverse (-)
61273210 .. 61275033
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59666

Sequence Viewer

Length: 666 bp
ATGGGGAGGAGACCTGCGAGGTGCTACCGTCAGATCAAGAACAAGCCGTACCCCAAGTCACGGTTCTGTCGTGGTGTCCCTGATCCTAAGATCAGAATTTATGATGTTGGGATGAAGAAGAAGGGTGTTGATGAGTTCCCCTTCTGTGTCCATCTTGTGAGTTGGGAGAAGGAAAATGTGTCAAGTGAGGCGCTTGAGGCTGCTCGTATTGCCTGCAACAAGTACATGGCTAAGTATGCTGGGAAGGATGCGTTCCATTTGAGAGTCAGGGTGCATCCGTTCCATGTTCTCCGCATCAACAAGATGCTTTCATGTGCCGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTTTTGGAAAGCCACTAGGAACATGTGCTCGAGTTGCTATTGGACAGGTTCTTCTTTCTGTTCGCTGCAGGGATGCCAACGGTCATCATGCACAGGAGGCCCTCCGACGTGCAAAGTTCAAGTTTCCAGGTCGCCAAAAGATCATCGTCAGCAGGAAGTGGGGATTCACCAAGTTTAACCGTAATGATTACGTGAAGTTCAAGGCTGAGGGCAAAGTTCAACCAGATGGTGTTAATGCTAAGCTTTATGGGTGCCATGGTGCTTTAGCTAACCGTCAACCTGGAAAAGCTTTCCTGCCTCCAACTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L16

Protein Analysis

221

Amino Acids

24.93

Weight (kDa)

10.36

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L16 PF00252 12 - 166 2.2e-35 Ribosomal protein L16p/L10e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccB1I GGYRCC 1 cut(s) 603
AciI CCGC 1 cut(s) 292
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 96
AfaI GTAC 2 cut(s) 50, 224
AfiI CCNNNNNNNGG 1 cut(s) 60
AflIII ACRYGT 1 cut(s) 374
AgsI TTSAA 3 cut(s) 472, 553, 572
AjiI CACGTC 1 cut(s) 461
AjnI CCWGG 2 cut(s) 478, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 3 cut(s) 595, 620, 641
AluI AGCT 3 cut(s) 595, 620, 641
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 4
AlwI GGATC 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 381
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 2 cut(s) 200, 417
ApoI RAATTY 1 cut(s) 96
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 451
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 511
AvaI CYCGRG 1 cut(s) 381
BanI GGYRCC 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 382
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 2 cut(s) 187, 404
BccI CCATC 2 cut(s) 159, 572
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 480, 633
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 4
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 418
BfoI RGCGCY 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 2 cut(s) 201, 418
BlpI GCTNAGC 1 cut(s) 591
BlsI GCNGC 2 cut(s) 202, 419
Bme1390I CCNGG 3 cut(s) 319, 480, 633
BmeT110I CYCGRG 1 cut(s) 381
BmgBI CACGTC 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 2 cut(s) 332, 605
BmrFI CCNGG 3 cut(s) 319, 480, 633
BmsI GCATC 5 cut(s) 238, 283, 294, 303, 415
BpmI CTGGAG 1 cut(s) 317
Bpu10I CCTNAGC 1 cut(s) 558
Bpu1102I GCTNAGC 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 544
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 2 cut(s) 318, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 2 cut(s) 480, 633
BseDI CCNNGG 2 cut(s) 318, 607
BseGI GGATG 4 cut(s) 117, 253, 274, 430
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 2 cut(s) 187, 404
BseYI CCCAGC 1 cut(s) 239
BshFI GGCC 1 cut(s) 452
BshNI GGYRCC 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 4
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 452
Bso31I GGTCTC 1 cut(s) 4
BsoBI CYCGRG 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 4 cut(s) 33, 82, 90, 492
Bsp1720I GCTNAGC 1 cut(s) 591
Bsp19I CCATGG 1 cut(s) 607
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 1 cut(s) 550
BspLI GGNNCC 2 cut(s) 332, 605
BspMAI CTGCAG 1 cut(s) 422
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 603
BspTNI GGTCTC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 318, 607
BssMI GATC 4 cut(s) 33, 82, 90, 492
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 2 cut(s) 480, 633
Bst4CI ACNGT 6 cut(s) 29, 63, 434, 533, 626, 658
BstBAI YACGTR 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 4 cut(s) 87, 231, 558, 591
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 4 cut(s) 117, 253, 274, 430
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 4 cut(s) 36, 85, 93, 495
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 4 cut(s) 33, 82, 90, 492
BstMWI GCNNNNNNNGC 5 cut(s) 197, 209, 236, 386, 449
BstNI CCWGG 2 cut(s) 480, 633
BstNSI RCATGY 1 cut(s) 378
BstSCI CCNGG 3 cut(s) 317, 478, 631
BstSFI CTRYAG 1 cut(s) 418
BstV1I GCAGC 2 cut(s) 187, 404
BsuRI GGCC 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 607
BtrI CACGTC 1 cut(s) 461
BtsCI GGATG 4 cut(s) 117, 253, 274, 430
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 451
Csp6I GTAC 2 cut(s) 49, 223
CviAII CATG 6 cut(s) 226, 284, 312, 375, 440, 608
CviQI GTAC 2 cut(s) 49, 223
DdeI CTNAG 4 cut(s) 87, 231, 558, 591
DpnI GATC 4 cut(s) 35, 84, 92, 494
DpnII GATC 4 cut(s) 33, 82, 90, 492
Eco130I CCWWGG 1 cut(s) 607
Eco31I GGTCTC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 478, 631
EcoT14I CCWWGG 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 6 cut(s) 229, 287, 315, 378, 443, 611
FaiI YATR 9 cut(s) 102, 227, 237, 285, 313, 376, 441, 600, 609
FaqI GGGAC 1 cut(s) 62
FatI CATG 6 cut(s) 225, 283, 311, 374, 439, 607
Fnu4HI GCNGC 2 cut(s) 201, 418
FokI GGATG 4 cut(s) 124, 260, 261, 437
Fsp4HI GCNGC 2 cut(s) 201, 418
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 192
GluI GCNGC 2 cut(s) 201, 418
GsaI CCCAGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 1 cut(s) 452
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 193
Hin1II CATG 6 cut(s) 229, 287, 315, 378, 443, 611
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HincII GTYRAC 1 cut(s) 629
HindII GTYRAC 1 cut(s) 629
HindIII AAGCTT 2 cut(s) 593, 639
HinfI GANTC 2 cut(s) 264, 516
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 1 cut(s) 629
Hpy188I TCNGA 3 cut(s) 33, 95, 458
Hpy188III TCNNGA 2 cut(s) 37, 334
Hpy8I GTNNAC 1 cut(s) 629
Hpy99I CGWCG 1 cut(s) 462
HpyAV CCTTC 4 cut(s) 115, 151, 163, 238
HpyCH4III ACNGT 6 cut(s) 29, 63, 434, 533, 626, 658
HpyCH4IV ACGT 2 cut(s) 460, 543
HpyCH4V TGCA 5 cut(s) 216, 274, 420, 443, 464
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 209, 236, 386, 449
HpyF3I CTNAG 4 cut(s) 87, 231, 558, 591
HpySE526I ACGT 2 cut(s) 460, 543
Hsp92II CATG 6 cut(s) 229, 287, 315, 378, 443, 611
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 4 cut(s) 33, 82, 90, 492
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 2 cut(s) 187, 404
LweI GCATC 5 cut(s) 238, 283, 294, 303, 415
MaeI CTAG 1 cut(s) 368
MaeII ACGT 2 cut(s) 460, 543
MaeIII GTNAC 1 cut(s) 57
MalI GATC 4 cut(s) 35, 84, 92, 494
MboI GATC 4 cut(s) 33, 82, 90, 492
MboII GAAGA 3 cut(s) 127, 130, 395
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 8 cut(s) 12, 181, 190, 339, 442, 464, 553, 660
MseI TTAA 2 cut(s) 528, 585
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 3 cut(s) 319, 480, 633
MvaI CCWGG 2 cut(s) 480, 633
MwoI GCNNNNNNNGC 5 cut(s) 197, 209, 236, 386, 449
NciI CCSGG 1 cut(s) 319
NcoI CCATGG 1 cut(s) 607
NdeII GATC 4 cut(s) 33, 82, 90, 492
NlaIII CATG 6 cut(s) 229, 287, 315, 378, 443, 611
NlaIV GGNNCC 2 cut(s) 332, 605
NmuCI GTSAC 1 cut(s) 57
NspI RCATGY 1 cut(s) 378
PaeR7I CTCGAG 1 cut(s) 381
PciI ACATGT 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 67
PfeI GAWTC 1 cut(s) 516
PkrI GCNGC 2 cut(s) 202, 419
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 544
PscI ACATGT 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 478, 631
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 2 cut(s) 478, 631
PspN4I GGNNCC 2 cut(s) 332, 605
PspPI GGNCC 1 cut(s) 451
PspXI VCTCGAGB 1 cut(s) 381
PsrI GAACNNNNNNTAC 2 cut(s) 32, 64
PstI CTGCAG 1 cut(s) 422
RsaI GTAC 2 cut(s) 50, 224
RsaNI GTAC 2 cut(s) 49, 223
SaqAI TTAA 2 cut(s) 528, 585
SatI GCNGC 2 cut(s) 201, 418
Sau3AI GATC 4 cut(s) 33, 82, 90, 492
Sau96I GGNCC 1 cut(s) 451
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 3 cut(s) 319, 480, 633
SduI GDGCHC 1 cut(s) 382
SfaNI GCATC 5 cut(s) 238, 283, 294, 303, 415
SfcI CTRYAG 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 381
SlaI CTCGAG 1 cut(s) 381
SmlI CTYRAG 2 cut(s) 194, 381
SmoI CTYRAG 2 cut(s) 194, 381
Sse9I AATT 1 cut(s) 96
SsiI CCGC 1 cut(s) 292
SspMI CTAG 1 cut(s) 368
StyD4I CCNGG 3 cut(s) 317, 478, 631
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 6 cut(s) 29, 63, 434, 533, 626, 658
TaiI ACGT 2 cut(s) 463, 546
TaqI TCGA 1 cut(s) 382
TasI AATT 1 cut(s) 96
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 1 cut(s) 516
Tru1I TTAA 2 cut(s) 528, 585
Tru9I TTAA 2 cut(s) 528, 585
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 2 cut(s) 200, 417
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 128, 300
TspGWI ACGGA 1 cut(s) 267
XapI RAATTY 1 cut(s) 96
XceI RCATGY 1 cut(s) 378
XhoI CTCGAG 1 cut(s) 381
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.