Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003864

Physical Location & Seq

Genomic Coordinates Reverse (-)

3019890 .. 3021187

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGGAGAAGGCCCGCCAGATGCTACCGCCAGATCAAGAACAAGCCCTACCCGAAATCCCGCTTCTGCCGCGGTGTGCCCGACCCGAAGATCCGAATCTATGACGTCGGCATGAAGAAGAAGGGCGTCGACGAGTTCCCCTTCTGCATCCACCTCGTCTCCTGGGAGAAGGAAAACGTTTCCAGCGAGGCTCTCGAGGCGGCGCGAATTGCATGCAACAAGTACATGACCAAGTTCGCTGGCAAGGATACCTTCCACCTGAGAGTTAGGGTTCACCCCTTCCATGTCCTCCGAATCAACAAGATGCTTTCGTGCGCCGGAGCCGATAGGCTTCAGACTGGTATGCGCGGAGCTTTCGGGAAGCCGCTCGGTACTTGCGCTAGGGTTGCTATTGGGCAGGTGCTGCTCTCTGTGCGTTGCAAGGAAAGCAACAAGAGCCACGCTGCTGAGGCCCTCCGCCGTGCCAAGTTCAAGTTTCCCGGCCGCCAAAAGATCATTGAGAGCAGGAAATGGGGATTCACCAAGTTCAACAGAACTGACTATGTGAGGTTGAAGTCCGAGGGTCGTATCATACCTGATGGTGTCAATGCCAAGTTGTTGCTTTTGCAGCTTTTGGGATGCCATGGATCTTTGGCATTGCGTCGCCCTGGTGGAGCATTCATTGATGCTGCTGTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

227

Amino Acids

25.51

Weight (kDa)

10.43

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14320 AT1G26910 AT1G26910 AT1G66580
fragaria_vesca	FvH4_3g40920 FvH4_7g26240 FvH4_7g26240
malus_domestica	MD01G1171100.v1.1 MD03G1048400.v1.1 MD11G1051200.v1.1
prunus_persica	Prupe.2G266600_v2.0.a1 Prupe.6G039000_v2.0.a1 Prupe.8G107100_v2.0.a1
pyrus_communis	pycom01g18330 pycom03g03810 pycom07g21380 pycom11g04100
rosa_chinensis	RchiOBHm_Chr1g0372691 RchiOBHm_Chr5g0073671
rosa_laevigata	RLG00000036403
rosa_multiflora	Rmu_co8347707.1_g000001 Rmu_sc0009248.1_g000005 Rmu_sc0009962.1_g000001 Rmu_sc0034231.1_g000001 Rmu_ssc0000419.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007630
rosa_rugosa	Rorug01G0373800 Rorug05G0425900
rosa_samantha	Rh1AG382400 Rh1BG345900 Rh1CG359200 Rh5DG515900
rosa_wichuraiana	Rw1G033640 Rw5G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
AatII	GACGTC	1 cut(s)	108
Acc36I	ACCTGC	1 cut(s)	388
AccBSI	CCGCTC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	3 cut(s)	72, 205, 348
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	2 cut(s)	85, 634
AcoI	YGGCCR	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	2 cut(s)	105, 126
AfaI	GTAC	2 cut(s)	224, 373
AgsI	TTSAA	3 cut(s)	472, 529, 553
AjnI	CCWGG	2 cut(s)	161, 646
AluBI	AGCT	2 cut(s)	353, 610
AluI	AGCT	2 cut(s)	353, 610
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	2 cut(s)	85, 634
AlwNI	CAGNNNCTG	1 cut(s)	403
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	11, 450, 481
ApeKI	GCWGC	4 cut(s)	403, 443, 607, 668
AspLEI	GCGC	4 cut(s)	205, 317, 348, 380
AspS9I	GGNCC	2 cut(s)	12, 451
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	2 cut(s)	266, 511
AvaI	CYCGRG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	390, 430, 619, 655
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	1 cut(s)	444
BcgI	CGANNNNNNTGC	4 cut(s)	136, 170, 195, 229
BciT130I	CCWGG	2 cut(s)	163, 648
BciVI	GTATCC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	8 cut(s)	70, 201, 365, 404, 444, 484, 608, 669
BlsI	GCNGC	8 cut(s)	71, 202, 366, 405, 445, 485, 609, 670
Bme1390I	CCNGG	3 cut(s)	163, 480, 648
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	12, 451
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	3 cut(s)	163, 480, 648
BmsI	GCATC	5 cut(s)	11, 156, 294, 608, 655
Bpu10I	CCTNAGC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	95
BsaHI	GRCGYC	2 cut(s)	105, 126
BsaJI	CCNNGG	5 cut(s)	70, 162, 558, 622, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	635
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	163, 648
BseDI	CCNNGG	5 cut(s)	70, 162, 558, 622, 646
BseGI	GGATG	2 cut(s)	147, 623
BseJI	GATNNNNATC	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	635
BseMII	CTCAG	2 cut(s)	251, 438
BseNI	ACTGG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	81
BseX3I	CGGCCG	1 cut(s)	481
BseXI	GCAGC	4 cut(s)	390, 430, 619, 655
Bsh1236I	CGCG	3 cut(s)	72, 205, 348
Bsh1285I	CGRYCG	1 cut(s)	484
BshFI	GGCC	3 cut(s)	13, 452, 483
BsiEI	CGRYCG	1 cut(s)	484
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	318, 480
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	3 cut(s)	13, 452, 483
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	33, 90, 492, 626
Bsp19I	CCATGG	1 cut(s)	622
BspANI	GGCC	3 cut(s)	13, 452, 483
BspCNI	CTCAG	2 cut(s)	252, 439
BspFNI	CGCG	3 cut(s)	72, 205, 348
BspLI	GGNNCC	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	2 cut(s)	85, 634
BsrBI	CCGCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	635
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	5 cut(s)	70, 162, 558, 622, 646
BssMI	GATC	4 cut(s)	33, 90, 492, 626
BssNI	GRCGYC	2 cut(s)	105, 126
BssT1I	CCWWGG	1 cut(s)	622
Bst2UI	CCWGG	2 cut(s)	163, 648
BstACI	GRCGYC	2 cut(s)	105, 126
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	15, 214, 241
BstDEI	CTNAG	2 cut(s)	260, 447
BstDSI	CCRYGG	2 cut(s)	70, 622
BstF5I	GGATG	2 cut(s)	147, 623
BstFNI	CGCG	3 cut(s)	72, 205, 348
BstHHI	GCGC	4 cut(s)	205, 317, 348, 380
BstKTI	GATC	4 cut(s)	36, 93, 495, 629
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	4 cut(s)	33, 90, 492, 626
BstMCI	CGRYCG	1 cut(s)	484
BstNI	CCWGG	2 cut(s)	163, 648
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	3 cut(s)	161, 478, 646
BstSLI	GKGCMC	1 cut(s)	81
BstUI	CGCG	3 cut(s)	72, 205, 348
BstV1I	GCAGC	4 cut(s)	390, 430, 619, 655
BstX2I	RGATCY	2 cut(s)	90, 626
BstYI	RGATCY	2 cut(s)	90, 626
BstZI	CGGCCG	1 cut(s)	481
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	13, 452, 483
BtgI	CCRYGG	2 cut(s)	70, 622
BtsCI	GGATG	2 cut(s)	147, 623
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	3 cut(s)	15, 214, 241
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	4 cut(s)	205, 317, 348, 380
Cfr13I	GGNCC	2 cut(s)	12, 451
Cfr42I	CCGCGG	1 cut(s)	73
CseI	GACGC	2 cut(s)	115, 629
Csp6I	GTAC	2 cut(s)	223, 372
CviAII	CATG	5 cut(s)	112, 213, 226, 284, 623
CviQI	GTAC	2 cut(s)	223, 372
DdeI	CTNAG	2 cut(s)	260, 447
DpnI	GATC	4 cut(s)	35, 92, 494, 628
DpnII	GATC	4 cut(s)	33, 90, 492, 626
EaeI	YGGCCR	1 cut(s)	481
EagI	CGGCCG	1 cut(s)	481
EciI	GGCGGA	1 cut(s)	446
EclXI	CGGCCG	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	622
Eco52I	CGGCCG	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	161, 646
EcoT14I	CCWWGG	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	622
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	5 cut(s)	115, 216, 229, 287, 626
FaiI	YATR	9 cut(s)	102, 113, 214, 227, 285, 344, 543, 572, 624
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	5 cut(s)	111, 212, 225, 283, 622
FauI	CCCGC	2 cut(s)	22, 68
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	8 cut(s)	70, 201, 365, 404, 444, 484, 608, 669
FokI	GGATG	2 cut(s)	134, 630
Fsp4HI	GCNGC	8 cut(s)	70, 201, 365, 404, 444, 484, 608, 669
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	4 cut(s)	204, 316, 347, 379
GluI	GCNGC	8 cut(s)	70, 201, 365, 404, 444, 484, 608, 669
HaeIII	GGCC	3 cut(s)	13, 452, 483
HapII	CCGG	2 cut(s)	318, 480
HgaI	GACGC	2 cut(s)	115, 629
HhaI	GCGC	4 cut(s)	205, 317, 348, 380
Hin1I	GRCGYC	2 cut(s)	105, 126
Hin1II	CATG	5 cut(s)	115, 216, 229, 287, 626
Hin6I	GCGC	4 cut(s)	203, 315, 346, 378
HinP1I	GCGC	4 cut(s)	203, 315, 346, 378
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	3 cut(s)	96, 294, 516
HpaII	CCGG	2 cut(s)	318, 480
HphI	GGTGA	2 cut(s)	266, 511
Hpy166II	GTNNAC	3 cut(s)	130, 274, 676
Hpy188I	TCNGA	4 cut(s)	95, 293, 336, 559
Hpy188III	TCNNGA	3 cut(s)	37, 194, 358
Hpy8I	GTNNAC	3 cut(s)	130, 274, 676
Hpy99I	CGWCG	4 cut(s)	110, 131, 134, 645
HpyAV	CCTTC	6 cut(s)	3, 115, 151, 163, 262, 289
HpyCH4IV	ACGT	2 cut(s)	105, 177
HpyCH4V	TGCA	5 cut(s)	147, 212, 216, 420, 607
HpyF3I	CTNAG	2 cut(s)	260, 447
HpySE526I	ACGT	2 cut(s)	105, 177
Hsp92I	GRCGYC	2 cut(s)	105, 126
Hsp92II	CATG	5 cut(s)	115, 216, 229, 287, 626
HspAI	GCGC	4 cut(s)	203, 315, 346, 378
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	33, 90, 492, 626
LmnI	GCTCC	3 cut(s)	320, 350, 653
Lsp1109I	GCAGC	4 cut(s)	390, 430, 619, 655
LweI	GCATC	5 cut(s)	11, 156, 294, 608, 655
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	105, 177
MalI	GATC	4 cut(s)	35, 92, 494, 628
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	4 cut(s)	33, 90, 492, 626
MboII	GAAGA	3 cut(s)	100, 127, 130
MflI	RGATCY	2 cut(s)	90, 626
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	207
MnlI	CCTC	8 cut(s)	164, 181, 190, 299, 442, 464, 540, 553
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	2 cut(s)	318, 480
MspR9I	CCNGG	3 cut(s)	163, 480, 648
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	2 cut(s)	163, 648
MvnI	CGCG	3 cut(s)	72, 205, 348
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	4 cut(s)	33, 90, 492, 626
NlaIII	CATG	5 cut(s)	115, 216, 229, 287, 626
NlaIV	GGNNCC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	216
PaeI	GCATGC	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	194
PaqCI	CACCTGC	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	656
PfeI	GAWTC	3 cut(s)	96, 294, 516
PkrI	GCNGC	8 cut(s)	71, 202, 366, 405, 445, 485, 609, 670
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	161, 646
PspGI	CCWGG	2 cut(s)	161, 646
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	12, 451
PsrI	GAACNNNNNNTAC	2 cut(s)	32, 64
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	2 cut(s)	90, 626
RsaI	GTAC	2 cut(s)	224, 373
RsaNI	GTAC	2 cut(s)	223, 372
SacII	CCGCGG	1 cut(s)	73
SalI	GTCGAC	1 cut(s)	128
SatI	GCNGC	8 cut(s)	70, 201, 365, 404, 444, 484, 608, 669
Sau3AI	GATC	4 cut(s)	33, 90, 492, 626
Sau96I	GGNCC	2 cut(s)	12, 451
ScrFI	CCNGG	3 cut(s)	163, 480, 648
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	5 cut(s)	11, 156, 294, 608, 655
Sfr274I	CTCGAG	1 cut(s)	194
Sfr303I	CCGCGG	1 cut(s)	73
SgrBI	CCGCGG	1 cut(s)	73
SgrDI	CGTCGACG	1 cut(s)	128
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	216
Sse9I	AATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	3 cut(s)	161, 478, 646
StyI	CCWWGG	1 cut(s)	622
TaiI	ACGT	2 cut(s)	108, 180
TaqI	TCGA	2 cut(s)	129, 195
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	4 cut(s)	72, 203, 367, 486
TfiI	GAWTC	3 cut(s)	96, 294, 516
TseI	GCWGC	4 cut(s)	403, 443, 607, 668
TspDTI	ATGAA	2 cut(s)	128, 649
XceI	RCATGY	1 cut(s)	216
XhoI	CTCGAG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	1 cut(s)	381
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.