Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003864

Physical Location & Seq

Genomic Coordinates Forward (+)

24839090 .. 24840806

Gene Structure 1717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGACGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCGAAATCACGATACTGTCGTGGTGTGCCAGATCCCAAAATCAGGATCTACGATGTTGGTATGAAGAGGAAAGGTGTTGATGAGTTTCCATTCTGTGTTCATTTGGTTTCATGGGAGAAAGAGAATGTGTCAAGTGAAGCACTTGAAGCAGCACGTATTGCTTGCAACAAGTATATGGTGAAATCTGCTGGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGGATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTCTGTTAGGTGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACTAAATTCAACCGTGCTGAGTACACGAAGCTGAGAGCGATGAAGAGGATTGTGCCTGATGGTGTCAATGCTAAGTTTCTATCAAACCATGGTCCATTGGCTAACCGTCAACCTGGAAGTGCCTTCATATCAGCCACTAGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031090 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

221

Amino Acids

24.93

Weight (kDa)

10.57

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L16	PF00252	13 - 166	1.9e-35	Ribosomal protein L16p/L10e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14320 AT1G26910 AT1G26910 AT1G66580
fragaria_vesca	FvH4_3g40920 FvH4_7g26240 FvH4_7g26240
malus_domestica	MD01G1171100.v1.1 MD03G1048400.v1.1 MD11G1051200.v1.1
prunus_persica	Prupe.2G266600_v2.0.a1 Prupe.6G039000_v2.0.a1 Prupe.8G107100_v2.0.a1
pyrus_communis	pycom01g18330 pycom03g03810 pycom07g21380 pycom11g04100
rosa_chinensis	RchiOBHm_Chr1g0372691 RchiOBHm_Chr5g0073671
rosa_laevigata	RLG00000036403
rosa_multiflora	Rmu_co8347707.1_g000001 Rmu_sc0009248.1_g000005 Rmu_sc0009962.1_g000001 Rmu_sc0034231.1_g000001 Rmu_ssc0000419.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007630
rosa_rugosa	Rorug01G0373800 Rorug05G0425900
rosa_samantha	Rh1AG382400 Rh1BG345900 Rh1CG359200 Rh5DG515900
rosa_wichuraiana	Rw1G033640 Rw5G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
AclWI	GGATC	2 cut(s)	77, 104
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	2 cut(s)	373, 542
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	197, 529
AjnI	CCWGG	2 cut(s)	478, 631
AluBI	AGCT	5 cut(s)	323, 365, 452, 464, 550
AluI	AGCT	5 cut(s)	323, 365, 452, 464, 550
AlwI	GGATC	2 cut(s)	77, 104
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	524
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	611
AsuHPI	GGTGA	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	611
BaeI	ACNNNNGTAYC	2 cut(s)	55, 88
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	572
BciT130I	CCWGG	2 cut(s)	480, 633
BfaI	CTAG	2 cut(s)	381, 657
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	480, 633
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	611
BmrFI	CCNGG	2 cut(s)	480, 633
BmsI	GCATC	2 cut(s)	238, 294
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	444
BsaAI	YACGTR	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	478, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	480, 633
BseDI	CCNNGG	2 cut(s)	478, 607
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	4 cut(s)	304, 458, 528, 542
BseNI	ACTGG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	82, 96, 492
Bsp19I	CCATGG	1 cut(s)	607
BspCNI	CTCAG	4 cut(s)	303, 457, 529, 543
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	2 cut(s)	77, 104
BspQI	GCTCTTC	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	478, 607
BssMI	GATC	3 cut(s)	82, 96, 492
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	2 cut(s)	480, 633
Bst4CI	ACNGT	4 cut(s)	29, 68, 533, 626
Bst6I	CTCTTC	3 cut(s)	110, 459, 557
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	6 cut(s)	290, 444, 465, 537, 551, 591
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	3 cut(s)	85, 99, 495
BstMBI	GATC	3 cut(s)	82, 96, 492
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 209, 386, 449
BstNI	CCWGG	2 cut(s)	480, 633
BstSCI	CCNGG	2 cut(s)	478, 631
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	2 cut(s)	82, 96
BstYI	RGATCY	2 cut(s)	82, 96
BtgI	CCRYGG	1 cut(s)	607
BtgZI	GCGATG	1 cut(s)	572
BtsCI	GGATG	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	611
Csp6I	GTAC	2 cut(s)	372, 541
CviAII	CATG	5 cut(s)	162, 284, 431, 440, 608
CviJI	RGCY	9 cut(s)	46, 323, 331, 365, 452, 464, 550, 620, 653
CviKI_1	RGCY	9 cut(s)	46, 323, 331, 365, 452, 464, 550, 620, 653
CviQI	GTAC	2 cut(s)	372, 541
DdeI	CTNAG	6 cut(s)	290, 444, 465, 537, 551, 591
DpnI	GATC	3 cut(s)	84, 98, 494
DpnII	GATC	3 cut(s)	82, 96, 492
Eam1104I	CTCTTC	3 cut(s)	110, 459, 557
EarI	CTCTTC	3 cut(s)	110, 459, 557
Eco130I	CCWWGG	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	478, 631
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	5 cut(s)	165, 287, 434, 443, 611
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	161, 283, 430, 439, 607
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	381, 657
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	339
Hin1II	CATG	5 cut(s)	165, 287, 434, 443, 611
HincII	GTYRAC	1 cut(s)	629
HindII	GTYRAC	1 cut(s)	629
HinfI	GANTC	1 cut(s)	516
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	543, 629
Hpy188I	TCNGA	2 cut(s)	33, 336
Hpy188III	TCNNGA	4 cut(s)	60, 94, 292, 446
Hpy8I	GTNNAC	2 cut(s)	543, 629
HpyAV	CCTTC	1 cut(s)	652
HpyCH4III	ACNGT	4 cut(s)	29, 68, 533, 626
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 209, 386, 449
HpyF3I	CTNAG	6 cut(s)	290, 444, 465, 537, 551, 591
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	5 cut(s)	165, 287, 434, 443, 611
Kzo9I	GATC	3 cut(s)	82, 96, 492
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	238, 294
MaeI	CTAG	2 cut(s)	381, 657
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	3 cut(s)	84, 98, 494
MboI	GATC	3 cut(s)	82, 96, 492
MboII	GAAGA	4 cut(s)	21, 127, 446, 574
MflI	RGATCY	2 cut(s)	82, 96
MluCI	AATT	1 cut(s)	524
MnlI	CCTC	4 cut(s)	111, 255, 341, 558
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	3 cut(s)	36, 297, 471
MspR9I	CCNGG	2 cut(s)	480, 633
MvaI	CCWGG	2 cut(s)	480, 633
MwoI	GCNNNNNNNGC	4 cut(s)	197, 209, 386, 449
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	3 cut(s)	82, 96, 492
NlaIII	CATG	5 cut(s)	165, 287, 434, 443, 611
PciSI	GCTCTTC	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	202
Ppu21I	YACGTR	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	478, 631
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	2 cut(s)	478, 631
PspPI	GGNCC	1 cut(s)	611
PsuI	RGATCY	2 cut(s)	82, 96
RsaI	GTAC	2 cut(s)	373, 542
RsaNI	GTAC	2 cut(s)	372, 541
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	36, 297, 471
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	3 cut(s)	82, 96, 492
Sau96I	GGNCC	1 cut(s)	611
ScrFI	CCNGG	2 cut(s)	480, 633
SfaNI	GCATC	2 cut(s)	238, 294
SinI	GGWCC	1 cut(s)	611
Sse9I	AATT	1 cut(s)	524
SspMI	CTAG	2 cut(s)	381, 657
StyD4I	CCNGG	2 cut(s)	478, 631
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	4 cut(s)	29, 68, 533, 626
TaiI	ACGT	1 cut(s)	208
TasI	AATT	1 cut(s)	524
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	3 cut(s)	36, 297, 471
Tru9I	TTAA	3 cut(s)	36, 297, 471
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	8 cut(s)	128, 140, 150, 245, 263, 428, 575, 634
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	2 cut(s)	381, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.