Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003864

Physical Location & Seq

Genomic Coordinates Reverse (-)

23113582 .. 23115217

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGAAGGAGGCCTGCAAGGTGCTATAGGCAGATTAAGAACAAGCCATACCCGAAATCGCGGTTCTGTCGTGGTGTCCCTGATCCCAAGATCAGAATTTATGATGTTGGAAAGAAGAAGAGGGGTGTTGATGAGTTCCCCTTCTGCGTCCATCTTGTGAGTTGGGAGAAGGAGAATGTCTCGAGCGAGGCGCTTGAGGCAGCTCGCATCGCCTGCAACAAGTACATGACGAAATCTGCTGGGAAGGATACTTTCCATTTGAGAGTGAGGGTGCATCCGTTCCATGTGCTGCGCATCAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACCGGTATGAGAGGTGCGTTTGGCAAGCCACTGGGAACATGTGCTCGAGTTGCTATCGGGCAGGTCCTCTTGTCTGTTCGCTGCAGGGATAGCAACGGTCAACATGCACAGGAGGCCCTCCGCCGTGCAAAGTTCAAGTTTCCGGGCCGCCAAAAGATTATTGTCAGCAGAAAGTGGGGTTTCACCAAGTTCAGTCGTGCTGATTACGTGAAGTACAAGAACGTAGGCAGAATCCAGCCAGATGGTGTTAATGCTAAGCTTCTCGGCTGCCATGGTCCTCTGGCTAATCGTCCATCGGGAAGAGCTTTCCTTTCTGGACCCGCCTCGTCGATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

225

Amino Acids

25.11

Weight (kDa)

10.65

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14320 AT1G26910 AT1G26910 AT1G66580
fragaria_vesca	FvH4_3g40920 FvH4_7g26240 FvH4_7g26240
malus_domestica	MD01G1171100.v1.1 MD03G1048400.v1.1 MD11G1051200.v1.1
prunus_persica	Prupe.2G266600_v2.0.a1 Prupe.6G039000_v2.0.a1 Prupe.8G107100_v2.0.a1
pyrus_communis	pycom01g18330 pycom03g03810 pycom07g21380 pycom11g04100
rosa_chinensis	RchiOBHm_Chr1g0372691 RchiOBHm_Chr5g0073671
rosa_laevigata	RLG00000036403
rosa_multiflora	Rmu_co8347707.1_g000001 Rmu_sc0009248.1_g000005 Rmu_sc0009962.1_g000001 Rmu_sc0034231.1_g000001 Rmu_ssc0000419.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007630
rosa_rugosa	Rorug01G0373800 Rorug05G0425900
rosa_samantha	Rh1AG382400 Rh1BG345900 Rh1CG359200 Rh5DG515900
rosa_wichuraiana	Rw1G033640 Rw5G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	388
AccII	CGCG	1 cut(s)	61
AciI	CCGC	4 cut(s)	61, 457, 484, 657
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	2 cut(s)	224, 551
AflIII	ACRYGT	1 cut(s)	374
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	472
AluBI	AGCT	3 cut(s)	203, 595, 641
AluI	AGCT	3 cut(s)	203, 595, 641
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	2 cut(s)	181, 381
AoxI	GGCC	3 cut(s)	11, 450, 481
ApeKI	GCWGC	4 cut(s)	200, 289, 417, 603
ApoI	RAATTY	1 cut(s)	96
AsiGI	ACCGGT	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	193, 294
AspS9I	GGNCC	5 cut(s)	400, 451, 481, 611, 653
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	511
AvaI	CYCGRG	2 cut(s)	181, 381
AvaII	GGWCC	3 cut(s)	400, 611, 653
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	4 cut(s)	212, 276, 404, 590
BccI	CCATC	3 cut(s)	159, 572, 637
BceAI	ACGGC	1 cut(s)	444
BciVI	GTATCC	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	184
BfmI	CTRYAG	2 cut(s)	25, 418
BfoI	RGCGCY	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	5 cut(s)	201, 290, 418, 484, 604
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	5 cut(s)	202, 291, 419, 485, 605
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	3 cut(s)	400, 611, 653
BmeT110I	CYCGRG	2 cut(s)	181, 381
BmgT120I	GGNCC	5 cut(s)	400, 451, 481, 611, 653
BmiI	GGNNCC	2 cut(s)	332, 655
BmrFI	CCNGG	1 cut(s)	480
BmrI	ACTGGG	1 cut(s)	377
BmsI	GCATC	4 cut(s)	216, 283, 294, 303
BmuI	ACTGGG	1 cut(s)	377
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	480
BsaAI	YACGTR	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	607
BsaWI	WCCGGW	1 cut(s)	338
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	372
BseXI	GCAGC	4 cut(s)	212, 276, 404, 590
BseYI	CCCAGC	2 cut(s)	239, 317
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	13, 452, 483
BshTI	ACCGGT	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	2 cut(s)	181, 381
BsiSI	CCGG	2 cut(s)	339, 479
BslFI	GGGAC	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	13, 452, 483
BsoBI	CYCGRG	2 cut(s)	181, 381
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	82, 90
Bsp1720I	GCTNAGC	1 cut(s)	591
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	4 cut(s)	61, 457, 484, 657
BspANI	GGCC	3 cut(s)	13, 452, 483
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	332, 655
BspMAI	CTGCAG	1 cut(s)	422
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	631
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	2 cut(s)	82, 90
BssT1I	CCWWGG	1 cut(s)	607
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	113, 631
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	544
BstC8I	GCNNGC	4 cut(s)	15, 205, 214, 362
BstDEI	CTNAG	1 cut(s)	591
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	61
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	193, 294
BstKTI	GATC	2 cut(s)	85, 93
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	82, 90
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 209, 213, 386, 426, 449
BstNSI	RCATGY	2 cut(s)	378, 443
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	2 cut(s)	25, 418
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	4 cut(s)	212, 276, 404, 590
BstXI	CCANNNNNNTGG	1 cut(s)	578
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	13, 452, 483
BtgI	CCRYGG	1 cut(s)	607
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	365
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	4 cut(s)	15, 205, 214, 362
CfoI	GCGC	2 cut(s)	193, 294
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	5 cut(s)	400, 451, 481, 611, 653
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	223, 550
CspAI	ACCGGT	1 cut(s)	338
CviAII	CATG	6 cut(s)	226, 284, 312, 375, 440, 608
CviQI	GTAC	2 cut(s)	223, 550
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	2 cut(s)	84, 92
DpnII	GATC	2 cut(s)	82, 90
Eam1104I	CTCTTC	2 cut(s)	113, 631
EarI	CTCTTC	2 cut(s)	113, 631
EciI	GGCGGA	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	607
Eco147I	AGGCCT	1 cut(s)	13
Eco47I	GGWCC	3 cut(s)	400, 611, 653
Eco88I	CYCGRG	2 cut(s)	181, 381
EcoO109I	RGGNCCY	2 cut(s)	400, 451
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	6 cut(s)	225, 283, 311, 374, 439, 607
FauI	CCCGC	1 cut(s)	664
Fnu4HI	GCNGC	5 cut(s)	201, 290, 418, 484, 604
FokI	GGATG	1 cut(s)	261
Fsp4HI	GCNGC	5 cut(s)	201, 290, 418, 484, 604
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	2 cut(s)	192, 293
GluI	GCNGC	5 cut(s)	201, 290, 418, 484, 604
GsaI	CCCAGC	2 cut(s)	243, 321
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	13, 452, 483
HapII	CCGG	2 cut(s)	339, 479
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	2 cut(s)	193, 294
Hin1II	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
Hin6I	GCGC	2 cut(s)	191, 292
HinP1I	GCGC	2 cut(s)	191, 292
HincII	GTYRAC	1 cut(s)	437
HindII	GTYRAC	1 cut(s)	437
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	1 cut(s)	567
HpaII	CCGG	2 cut(s)	339, 479
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	4 cut(s)	181, 334, 633, 651
Hpy8I	GTNNAC	1 cut(s)	437
Hpy99I	CGWCG	1 cut(s)	667
HpyAV	CCTTC	3 cut(s)	151, 163, 238
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	2 cut(s)	543, 558
HpyCH4V	TGCA	6 cut(s)	17, 216, 274, 420, 443, 464
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 209, 213, 386, 426, 449
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	2 cut(s)	543, 558
Hsp92II	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
HspAI	GCGC	2 cut(s)	191, 292
Kzo9I	GATC	2 cut(s)	82, 90
LguI	GCTCTTC	1 cut(s)	631
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	4 cut(s)	212, 276, 404, 590
LweI	GCATC	4 cut(s)	216, 283, 294, 303
MaeII	ACGT	2 cut(s)	543, 558
MalI	GATC	2 cut(s)	84, 92
MboI	GATC	2 cut(s)	82, 90
MboII	GAAGA	3 cut(s)	127, 130, 648
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	88
MseI	TTAA	2 cut(s)	36, 585
MspI	CCGG	2 cut(s)	339, 479
MspR9I	CCNGG	1 cut(s)	480
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	6 cut(s)	197, 209, 213, 386, 426, 449
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	2 cut(s)	82, 90
NlaIII	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
NlaIV	GGNNCC	2 cut(s)	332, 655
NmeAIII	GCCGAG	1 cut(s)	579
NsbI	TGCGCA	1 cut(s)	293
NspI	RCATGY	2 cut(s)	378, 443
PaeR7I	CTCGAG	2 cut(s)	181, 381
PceI	AGGCCT	1 cut(s)	13
PciI	ACATGT	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	567
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	5 cut(s)	202, 291, 419, 485, 605
Ppu21I	YACGTR	1 cut(s)	544
PpuMI	RGGWCCY	1 cut(s)	400
PscI	ACATGT	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	400
PspFI	CCCAGC	2 cut(s)	239, 317
PspN4I	GGNNCC	2 cut(s)	332, 655
PspPI	GGNCC	5 cut(s)	400, 451, 481, 611, 653
PspPPI	RGGWCCY	1 cut(s)	400
PspXI	VCTCGAGB	1 cut(s)	381
PsrI	GAACNNNNNNTAC	2 cut(s)	32, 64
PstI	CTGCAG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	224, 551
RsaNI	GTAC	2 cut(s)	223, 550
SapI	GCTCTTC	1 cut(s)	631
SaqAI	TTAA	2 cut(s)	36, 585
SatI	GCNGC	5 cut(s)	201, 290, 418, 484, 604
Sau3AI	GATC	2 cut(s)	82, 90
Sau96I	GGNCC	5 cut(s)	400, 451, 481, 611, 653
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	8 cut(s)	23, 205, 352, 402, 546, 561, 597, 643
SfaNI	GCATC	4 cut(s)	216, 283, 294, 303
SfcI	CTRYAG	2 cut(s)	25, 418
Sfr274I	CTCGAG	2 cut(s)	181, 381
SinI	GGWCC	3 cut(s)	400, 611, 653
SlaI	CTCGAG	2 cut(s)	181, 381
SmlI	CTYRAG	3 cut(s)	181, 194, 381
SmoI	CTYRAG	3 cut(s)	181, 194, 381
Sse9I	AATT	1 cut(s)	96
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	4 cut(s)	61, 457, 484, 657
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	2 cut(s)	546, 561
TaqI	TCGA	3 cut(s)	182, 382, 665
TasI	AATT	1 cut(s)	96
TatI	WGTACW	2 cut(s)	222, 549
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	2 cut(s)	36, 585
Tru9I	TTAA	2 cut(s)	36, 585
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	4 cut(s)	200, 289, 417, 603
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	3 cut(s)	400, 611, 653
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	2 cut(s)	378, 443
XhoI	CTCGAG	2 cut(s)	181, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.