Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000419.1

Orthogroup ID

OG0003864

Physical Location & Seq

Genomic Coordinates Forward (+)

2340 .. 3862

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000419.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggggaggagacctgcgaggtgctaccgtcagatcaagaacaagccgtaccccaagtcacggttctgtcgtggtgtccctgatcctaagatcagaatttatgatgttgggatgaagaagaagggtgttgatgagttccccttctgtgtccatcttgtgagttgggagaaggaaaatgtgtcgagtgaggcgcttgaggctgctcgtattgcctgcaacaagtacatggctaagtatgctgggaaggatgcgttccatttgagagtcagggtgcatccattccatgttctccgcatcaacaagatgctttcatgtgccggggctgataggctccagactggaatgaggggtgcttttggaaagccactaggaacatgtgctcgagttgctattggacaggttcttctttctgttcgctgcagggatgccaacggtcatcatgcacaggaggccctccgacgtgcaaagttcaagtttccaggtcgccaaaagatcatcgtcagcaggaagtggggattcaccaagtttaaccgtaatgattacgtgaagttcaaggctgagggcaaagttcaaccagatggtgttaatgctaagctttatgggtgccatggtgctttagctaaccgtcaacctggaaaagctttcctgcctccaactgttgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

221

Amino Acids

24.93

Weight (kDa)

10.36

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14320 AT1G26910 AT1G26910 AT1G66580
fragaria_vesca	FvH4_3g40920 FvH4_7g26240 FvH4_7g26240
malus_domestica	MD01G1171100.v1.1 MD03G1048400.v1.1 MD11G1051200.v1.1
prunus_persica	Prupe.2G266600_v2.0.a1 Prupe.6G039000_v2.0.a1 Prupe.8G107100_v2.0.a1
pyrus_communis	pycom01g18330 pycom03g03810 pycom07g21380 pycom11g04100
rosa_chinensis	RchiOBHm_Chr1g0372691 RchiOBHm_Chr5g0073671
rosa_laevigata	RLG00000036403
rosa_multiflora	Rmu_co8347707.1_g000001 Rmu_sc0009248.1_g000005 Rmu_sc0009962.1_g000001 Rmu_sc0034231.1_g000001 Rmu_ssc0000419.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007630
rosa_rugosa	Rorug01G0373800 Rorug05G0425900
rosa_samantha	Rh1AG382400 Rh1BG345900 Rh1CG359200 Rh5DG515900
rosa_wichuraiana	Rw1G033640 Rw5G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
AccB1I	GGYRCC	1 cut(s)	603
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	2 cut(s)	50, 224
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	472, 553, 572
AjiI	CACGTC	1 cut(s)	461
AjnI	CCWGG	2 cut(s)	478, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	3 cut(s)	595, 620, 641
AluI	AGCT	3 cut(s)	595, 620, 641
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	200, 417
ApoI	RAATTY	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	511
AvaI	CYCGRG	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	382
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	2 cut(s)	187, 404
BccI	CCATC	2 cut(s)	159, 572
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	480, 633
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	418
BfoI	RGCGCY	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	201, 418
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	2 cut(s)	202, 419
Bme1390I	CCNGG	3 cut(s)	319, 480, 633
BmeT110I	CYCGRG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	332, 605
BmrFI	CCNGG	3 cut(s)	319, 480, 633
BmsI	GCATC	5 cut(s)	238, 283, 294, 303, 415
BpmI	CTGGAG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	544
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	2 cut(s)	318, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	480, 633
BseDI	CCNNGG	2 cut(s)	318, 607
BseGI	GGATG	4 cut(s)	117, 253, 274, 430
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	187, 404
BseYI	CCCAGC	1 cut(s)	239
BshFI	GGCC	1 cut(s)	452
BshNI	GGYRCC	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	1 cut(s)	4
BsoBI	CYCGRG	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	4 cut(s)	33, 82, 90, 492
Bsp1720I	GCTNAGC	1 cut(s)	591
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	332, 605
BspMAI	CTGCAG	1 cut(s)	422
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	603
BspTNI	GGTCTC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	318, 607
BssMI	GATC	4 cut(s)	33, 82, 90, 492
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	2 cut(s)	480, 633
Bst4CI	ACNGT	6 cut(s)	29, 63, 434, 533, 626, 658
BstBAI	YACGTR	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	4 cut(s)	87, 231, 558, 591
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	4 cut(s)	117, 253, 274, 430
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	4 cut(s)	36, 85, 93, 495
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	4 cut(s)	33, 82, 90, 492
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 209, 236, 386, 449
BstNI	CCWGG	2 cut(s)	480, 633
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	3 cut(s)	317, 478, 631
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	2 cut(s)	187, 404
BsuRI	GGCC	1 cut(s)	452
BtgI	CCRYGG	1 cut(s)	607
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	4 cut(s)	117, 253, 274, 430
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	2 cut(s)	49, 223
CviAII	CATG	6 cut(s)	226, 284, 312, 375, 440, 608
CviQI	GTAC	2 cut(s)	49, 223
DdeI	CTNAG	4 cut(s)	87, 231, 558, 591
DpnI	GATC	4 cut(s)	35, 84, 92, 494
DpnII	GATC	4 cut(s)	33, 82, 90, 492
Eco130I	CCWWGG	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	478, 631
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
FaiI	YATR	9 cut(s)	102, 227, 237, 285, 313, 376, 441, 600, 609
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	6 cut(s)	225, 283, 311, 374, 439, 607
Fnu4HI	GCNGC	2 cut(s)	201, 418
FokI	GGATG	4 cut(s)	124, 260, 261, 437
Fsp4HI	GCNGC	2 cut(s)	201, 418
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	2 cut(s)	201, 418
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	629
HindII	GTYRAC	1 cut(s)	629
HindIII	AAGCTT	2 cut(s)	593, 639
HinfI	GANTC	2 cut(s)	264, 516
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	629
Hpy188I	TCNGA	3 cut(s)	33, 95, 458
Hpy188III	TCNNGA	2 cut(s)	37, 334
Hpy8I	GTNNAC	1 cut(s)	629
Hpy99I	CGWCG	1 cut(s)	462
HpyAV	CCTTC	4 cut(s)	115, 151, 163, 238
HpyCH4III	ACNGT	6 cut(s)	29, 63, 434, 533, 626, 658
HpyCH4IV	ACGT	2 cut(s)	460, 543
HpyCH4V	TGCA	5 cut(s)	216, 274, 420, 443, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 209, 236, 386, 449
HpyF3I	CTNAG	4 cut(s)	87, 231, 558, 591
HpySE526I	ACGT	2 cut(s)	460, 543
Hsp92II	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	4 cut(s)	33, 82, 90, 492
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	2 cut(s)	187, 404
LweI	GCATC	5 cut(s)	238, 283, 294, 303, 415
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	2 cut(s)	460, 543
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	4 cut(s)	35, 84, 92, 494
MboI	GATC	4 cut(s)	33, 82, 90, 492
MboII	GAAGA	3 cut(s)	127, 130, 395
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	8 cut(s)	12, 181, 190, 339, 442, 464, 553, 660
MseI	TTAA	2 cut(s)	528, 585
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	3 cut(s)	319, 480, 633
MvaI	CCWGG	2 cut(s)	480, 633
MwoI	GCNNNNNNNGC	5 cut(s)	197, 209, 236, 386, 449
NciI	CCSGG	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	4 cut(s)	33, 82, 90, 492
NlaIII	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
NlaIV	GGNNCC	2 cut(s)	332, 605
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	378
PaeR7I	CTCGAG	1 cut(s)	381
PciI	ACATGT	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	516
PkrI	GCNGC	2 cut(s)	202, 419
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	544
PscI	ACATGT	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	478, 631
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	2 cut(s)	478, 631
PspN4I	GGNNCC	2 cut(s)	332, 605
PspPI	GGNCC	1 cut(s)	451
PspXI	VCTCGAGB	1 cut(s)	381
PsrI	GAACNNNNNNTAC	2 cut(s)	32, 64
PstI	CTGCAG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	50, 224
RsaNI	GTAC	2 cut(s)	49, 223
SaqAI	TTAA	2 cut(s)	528, 585
SatI	GCNGC	2 cut(s)	201, 418
Sau3AI	GATC	4 cut(s)	33, 82, 90, 492
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	3 cut(s)	319, 480, 633
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	5 cut(s)	238, 283, 294, 303, 415
SfcI	CTRYAG	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	194, 381
SmoI	CTYRAG	2 cut(s)	194, 381
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	3 cut(s)	317, 478, 631
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	6 cut(s)	29, 63, 434, 533, 626, 658
TaiI	ACGT	2 cut(s)	463, 546
TaqI	TCGA	2 cut(s)	182, 382
TasI	AATT	1 cut(s)	96
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	2 cut(s)	528, 585
Tru9I	TTAA	2 cut(s)	528, 585
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	200, 417
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	128, 300
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	378
XhoI	CTCGAG	1 cut(s)	381
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.