Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003864

Physical Location & Seq

Genomic Coordinates Forward (+)

13820303 .. 13821634

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G107100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGACGAAGACCAGCCAGGTGCTACCGCCAGATCAAGAACAAACCCTACCCGAAATCGCGTTTTTGCCGTGGTGTTCCGGATCCGAAGATCCGAATCTACGATGTGGGCATGAAGAAGAAGGGCGTGGATGAGTTTCCTTTCTGCATCCACCTCGTTTCTTGGGAGAAAGAAAACGTTTCGAGCGAAGCCCTCGAGGCCGCCCGTATTGCCTGCAACAAGTACATGACTAAGTTCGCCGGAAAGGACACGTTTCATTTGCGAGTTAGGGTTCATCCTTTCCATGTTCTCAGGATCAACAAGATGCTTTCTTGCGCCGGAGCCGATAGGCTTCAGACTGGTATGCGAGGTGCTTTTGGGAAGCCCCTCGGTACTTGTGCTAGGGTTGCTATTGGTCAGGTGCTTCTCTCCGTTCGCTGCAAAGACAGCAACAAGCACCACGCTCATGAGGCTCTGCGCCGCTCCAAGTTCAAGTTCCCTGGGCGTCAAAAGATCATTGAGAGCAGGAAATGGGGCTTTACCAAGTTCAGCAGAGCTGACTATGTCAGGTTGAAGGCAGAGAATCGTATTGTTCCTGATGGTGTCAATGCCAAGCTTTTGGGATGCCATGGATCTTTGGCGTTGCGCCGTCCTGGAGGAGCATTCATAGACGCTGCTGTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

222

Amino Acids

25.02

Weight (kDa)

10.43

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14320 AT1G26910 AT1G26910 AT1G66580
fragaria_vesca	FvH4_3g40920 FvH4_7g26240 FvH4_7g26240
malus_domestica	MD01G1171100.v1.1 MD03G1048400.v1.1 MD11G1051200.v1.1
prunus_persica	Prupe.2G266600_v2.0.a1 Prupe.6G039000_v2.0.a1 Prupe.8G107100_v2.0.a1
pyrus_communis	pycom01g18330 pycom03g03810 pycom07g21380 pycom11g04100
rosa_chinensis	RchiOBHm_Chr1g0372691 RchiOBHm_Chr5g0073671
rosa_laevigata	RLG00000036403
rosa_multiflora	Rmu_co8347707.1_g000001 Rmu_sc0009248.1_g000005 Rmu_sc0009962.1_g000001 Rmu_sc0034231.1_g000001 Rmu_ssc0000419.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007630
rosa_rugosa	Rorug01G0373800 Rorug05G0425900
rosa_samantha	Rh1AG382400 Rh1BG345900 Rh1CG359200 Rh5DG515900
rosa_wichuraiana	Rw1G033640 Rw5G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	462
AccII	CGCG	1 cut(s)	61
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	3 cut(s)	28, 201, 460
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	5 cut(s)	77, 85, 90, 302, 619
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	484
AfaI	GTAC	2 cut(s)	224, 373
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	472, 553
AjnI	CCWGG	3 cut(s)	17, 478, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	2 cut(s)	536, 595
AluI	AGCT	2 cut(s)	536, 595
AlwI	GGATC	5 cut(s)	77, 85, 90, 302, 619
Ama87I	CYCGRG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	417, 653
AspLEI	GCGC	3 cut(s)	317, 459, 627
AvaI	CYCGRG	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	404, 640
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	2 cut(s)	54, 612
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	3 cut(s)	19, 480, 633
BfaI	CTAG	1 cut(s)	381
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	4 cut(s)	201, 418, 460, 654
BlsI	GCNGC	4 cut(s)	202, 419, 461, 655
Bme1390I	CCNGG	3 cut(s)	19, 480, 633
BmeT110I	CYCGRG	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	84, 322
BmrFI	CCNGG	3 cut(s)	19, 480, 633
BmsI	GCATC	3 cut(s)	156, 294, 593
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	654
BsaBI	GATNNNNATC	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	484
BsaJI	CCNNGG	5 cut(s)	70, 367, 478, 479, 607
BsaWI	WCCGGW	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	95
BseAI	TCCGGA	1 cut(s)	79
BseBI	CCWGG	3 cut(s)	19, 480, 633
BseDI	CCNNGG	5 cut(s)	70, 367, 478, 479, 607
BseGI	GGATG	4 cut(s)	136, 147, 274, 608
BseJI	GATNNNNATC	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	651
BseXI	GCAGC	2 cut(s)	404, 640
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	3 cut(s)	80, 240, 318
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	194
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	6 cut(s)	33, 82, 90, 294, 492, 611
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	3 cut(s)	28, 201, 460
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	303
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	84, 322
BspPI	GGATC	5 cut(s)	77, 85, 90, 302, 619
BsrBI	CCGCTC	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	5 cut(s)	70, 367, 478, 479, 607
BssMI	GATC	6 cut(s)	33, 82, 90, 294, 492, 611
BssNI	GRCGYC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	3 cut(s)	19, 480, 633
BstACI	GRCGYC	1 cut(s)	484
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	231, 290
BstDSI	CCRYGG	2 cut(s)	70, 607
BstF5I	GGATG	4 cut(s)	136, 147, 274, 608
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	3 cut(s)	317, 459, 627
BstKTI	GATC	6 cut(s)	36, 85, 93, 297, 495, 614
BstMBI	GATC	6 cut(s)	33, 82, 90, 294, 492, 611
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 209, 386, 426, 449
BstNI	CCWGG	3 cut(s)	19, 480, 633
BstSCI	CCNGG	3 cut(s)	17, 478, 631
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	404, 640
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	3 cut(s)	82, 90, 611
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	3 cut(s)	82, 90, 611
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	2 cut(s)	70, 607
BtsCI	GGATG	4 cut(s)	136, 147, 274, 608
Cac8I	GCNNGC	1 cut(s)	214
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	3 cut(s)	317, 459, 627
CseI	GACGC	2 cut(s)	473, 659
Csp6I	GTAC	2 cut(s)	223, 372
CviAII	CATG	5 cut(s)	112, 226, 284, 446, 608
CviQI	GTAC	2 cut(s)	223, 372
DdeI	CTNAG	2 cut(s)	231, 290
DpnI	GATC	6 cut(s)	35, 84, 92, 296, 494, 613
DpnII	GATC	6 cut(s)	33, 82, 90, 294, 492, 611
Eco130I	CCWWGG	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	194
EcoRII	CCWGG	3 cut(s)	17, 478, 631
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	5 cut(s)	115, 229, 287, 449, 611
FaiI	YATR	8 cut(s)	113, 227, 285, 344, 447, 543, 609, 647
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	111, 225, 283, 445, 607
Fnu4HI	GCNGC	4 cut(s)	201, 418, 460, 654
FokI	GGATG	4 cut(s)	134, 143, 261, 615
Fsp4HI	GCNGC	4 cut(s)	201, 418, 460, 654
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	3 cut(s)	316, 458, 626
GluI	GCNGC	4 cut(s)	201, 418, 460, 654
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	3 cut(s)	80, 240, 318
HgaI	GACGC	2 cut(s)	473, 659
HhaI	GCGC	3 cut(s)	317, 459, 627
Hin1I	GRCGYC	1 cut(s)	484
Hin1II	CATG	5 cut(s)	115, 229, 287, 449, 611
Hin6I	GCGC	3 cut(s)	315, 457, 625
HinP1I	GCGC	3 cut(s)	315, 457, 625
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	2 cut(s)	96, 562
HpaII	CCGG	3 cut(s)	80, 240, 318
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	3 cut(s)	87, 95, 336
Hpy188III	TCNNGA	5 cut(s)	37, 80, 292, 446, 575
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	2 cut(s)	115, 547
HpyCH4IV	ACGT	2 cut(s)	177, 251
HpyCH4V	TGCA	3 cut(s)	147, 216, 420
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 209, 386, 426, 449
HpyF3I	CTNAG	2 cut(s)	231, 290
HpySE526I	ACGT	2 cut(s)	177, 251
Hsp92I	GRCGYC	1 cut(s)	484
Hsp92II	CATG	5 cut(s)	115, 229, 287, 449, 611
HspAI	GCGC	3 cut(s)	315, 457, 625
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	6 cut(s)	33, 82, 90, 294, 492, 611
LmnI	GCTCC	3 cut(s)	320, 467, 638
Lsp1109I	GCAGC	2 cut(s)	404, 640
LweI	GCATC	3 cut(s)	156, 294, 593
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	177, 251
MalI	GATC	6 cut(s)	35, 84, 92, 296, 494, 613
MbiI	CCGCTC	1 cut(s)	462
MboI	GATC	6 cut(s)	33, 82, 90, 294, 492, 611
MboII	GAAGA	4 cut(s)	21, 100, 127, 130
MflI	RGATCY	3 cut(s)	82, 90, 611
MnlI	CCTC	7 cut(s)	164, 190, 203, 341, 377, 442, 629
MroI	TCCGGA	1 cut(s)	79
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	3 cut(s)	80, 240, 318
MspR9I	CCNGG	3 cut(s)	19, 480, 633
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	3 cut(s)	19, 480, 633
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	5 cut(s)	197, 209, 386, 426, 449
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	6 cut(s)	33, 82, 90, 294, 492, 611
NlaIII	CATG	5 cut(s)	115, 229, 287, 449, 611
NlaIV	GGNNCC	2 cut(s)	84, 322
PaeR7I	CTCGAG	1 cut(s)	194
PagI	TCATGA	1 cut(s)	445
PasI	CCCWGGG	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	641
PfeI	GAWTC	2 cut(s)	96, 562
PflFI	GACNNNGTC	1 cut(s)	542
PfoI	TCCNGGA	1 cut(s)	631
PkrI	GCNGC	4 cut(s)	202, 419, 461, 655
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	3 cut(s)	17, 478, 631
PspGI	CCWGG	3 cut(s)	17, 478, 631
PspN4I	GGNNCC	2 cut(s)	84, 322
PspXI	VCTCGAGB	1 cut(s)	194
PsrI	GAACNNNNNNTAC	2 cut(s)	32, 64
PsuI	RGATCY	3 cut(s)	82, 90, 611
PsyI	GACNNNGTC	1 cut(s)	542
RsaI	GTAC	2 cut(s)	224, 373
RsaNI	GTAC	2 cut(s)	223, 372
RseI	CAYNNNNRTG	1 cut(s)	444
SatI	GCNGC	4 cut(s)	201, 418, 460, 654
Sau3AI	GATC	6 cut(s)	33, 82, 90, 294, 492, 611
ScrFI	CCNGG	3 cut(s)	19, 480, 633
SetI	ASST	9 cut(s)	23, 156, 180, 254, 352, 402, 538, 551, 597
SfaNI	GCATC	3 cut(s)	156, 294, 593
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SsiI	CCGC	3 cut(s)	28, 201, 460
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	3 cut(s)	17, 478, 631
StyI	CCWWGG	1 cut(s)	607
TaiI	ACGT	2 cut(s)	180, 254
TaqI	TCGA	2 cut(s)	182, 195
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	2 cut(s)	203, 462
TfiI	GAWTC	2 cut(s)	96, 562
TseI	GCWGC	2 cut(s)	417, 653
TspDTI	ATGAA	4 cut(s)	128, 245, 263, 634
TspGWI	ACGGA	1 cut(s)	400
Tth111I	GACNNNGTC	1 cut(s)	542
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.