Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003864

Physical Location & Seq

Genomic Coordinates Reverse (-)

27298714 .. 27301299

Gene Structure 2586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G266600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGGAGGAGGCCTGCAAGGTGTTATAGGCAGATTAAGAACAAGCCATACCCGAAGTCACGTTTCTGTCGCGGTGTGCCTGATCCTAAGATCAGAATTTATGATGTTGGAATGAAGAAGAAAGGTGTTGATGAGTTTCCCTTCTGCGTCCATCTTGTGAGTTGGGAAAAAGAGAATGTTTCAAGTGAGGCACTTGAGGCAGCTAGGATTGCTTGCAACAAATACATGACCAAATTTGCTGGGAAGGATACGTTCCATTTGAGGGTGCGGGTGCATCCATTCCATGTTCTACGCATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAAACTGGAATGAGGGGTGCATTTGGCAAGCCACTAGGAACATGTGCACGAGTTGCGATTGGGCAGGTCCTCCTTTCTGTTCGCTGCAAGGATAGCAACAGCCATCATGCACAGGAGGCCCTCCGCCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAGATTATTGTTAGCAGGAAGTGGGGATTCACCAAGTTCAGCCGTGCTGATTATGTAAAGTACAAGAAGGAGAACAGAATCCAGCCCGATGGTGTTAATGCTAAGCTTTTTGGATGTCATGGTCCTTTGGCTAACCGGAAACCTGGAAAAGCTTTCCTGTCTGCTCCTTTATCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

223

Amino Acids

25.16

Weight (kDa)

10.44

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14320 AT1G26910 AT1G26910 AT1G66580
fragaria_vesca	FvH4_3g40920 FvH4_7g26240 FvH4_7g26240
malus_domestica	MD01G1171100.v1.1 MD03G1048400.v1.1 MD11G1051200.v1.1
prunus_persica	Prupe.2G266600_v2.0.a1 Prupe.6G039000_v2.0.a1 Prupe.8G107100_v2.0.a1
pyrus_communis	pycom01g18330 pycom03g03810 pycom07g21380 pycom11g04100
rosa_chinensis	RchiOBHm_Chr1g0372691 RchiOBHm_Chr5g0073671
rosa_laevigata	RLG00000036403
rosa_multiflora	Rmu_co8347707.1_g000001 Rmu_sc0009248.1_g000005 Rmu_sc0009962.1_g000001 Rmu_sc0034231.1_g000001 Rmu_ssc0000419.1_g000002
rosa_roxburghii	Rroxscaffold_1G00007630
rosa_rugosa	Rorug01G0373800 Rorug05G0425900
rosa_samantha	Rh1AG382400 Rh1BG345900 Rh1CG359200 Rh5DG515900
rosa_wichuraiana	Rw1G033640 Rw5G044850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	72, 268, 457
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	96, 233
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	183, 472
AjnI	CCWGG	2 cut(s)	478, 631
AluBI	AGCT	3 cut(s)	203, 595, 641
AluI	AGCT	3 cut(s)	203, 595, 641
Alw21I	GWGCWC	1 cut(s)	382
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	77
AoxI	GGCC	2 cut(s)	11, 450
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	200, 417
ApoI	RAATTY	2 cut(s)	96, 233
AspS9I	GGNCC	3 cut(s)	400, 451, 611
AsuHPI	GGTGA	1 cut(s)	511
AvaII	GGWCC	2 cut(s)	400, 611
BaeGI	GKGCMC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	212, 404
BccI	CCATC	3 cut(s)	159, 444, 572
BceAI	ACGGC	2 cut(s)	444, 516
BciT130I	CCWGG	2 cut(s)	480, 633
BciVI	GTATCC	1 cut(s)	241
BfaI	CTAG	2 cut(s)	204, 368
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	201, 418
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	2 cut(s)	202, 419
Bme1390I	CCNGG	2 cut(s)	480, 633
Bme18I	GGWCC	2 cut(s)	400, 611
BmgT120I	GGNCC	3 cut(s)	400, 451, 611
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	2 cut(s)	480, 633
BmsI	GCATC	2 cut(s)	283, 294
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	480, 633
BseGI	GGATG	2 cut(s)	274, 608
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	212, 404
BseYI	CCCAGC	2 cut(s)	239, 317
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	13, 452
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	262
BsnI	GGCC	2 cut(s)	13, 452
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	82, 90
Bsp1720I	GCTNAGC	1 cut(s)	591
BspACI	CCGC	3 cut(s)	72, 268, 457
BspANI	GGCC	2 cut(s)	13, 452
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	332
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	82, 90
BssSI	CACGAG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	480, 633
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	15, 214, 362
BstDEI	CTNAG	2 cut(s)	87, 591
BstF5I	GGATG	2 cut(s)	274, 608
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	85, 93
BstMBI	GATC	2 cut(s)	82, 90
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 209, 386, 426, 449
BstNI	CCWGG	2 cut(s)	480, 633
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	478, 631
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	212, 404
BstXI	CCANNNNNNTGG	1 cut(s)	578
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	13, 452
BtsCI	GGATG	2 cut(s)	274, 608
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	3 cut(s)	15, 214, 362
Cfr13I	GGNCC	3 cut(s)	400, 451, 611
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	6 cut(s)	226, 284, 312, 375, 440, 608
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	87, 591
DpnI	GATC	2 cut(s)	84, 92
DpnII	GATC	2 cut(s)	82, 90
EciI	GGCGGA	1 cut(s)	446
Eco147I	AGGCCT	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	400, 611
EcoO109I	RGGNCCY	2 cut(s)	400, 451
EcoRII	CCWGG	2 cut(s)	478, 631
FaeI	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
FatI	CATG	6 cut(s)	225, 283, 311, 374, 439, 607
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	201, 418
FokI	GGATG	2 cut(s)	261, 615
Fsp4HI	GCNGC	2 cut(s)	201, 418
FspBI	CTAG	2 cut(s)	204, 368
GluI	GCNGC	2 cut(s)	201, 418
GsaI	CCCAGC	2 cut(s)	243, 321
HaeIII	GGCC	2 cut(s)	13, 452
HapII	CCGG	1 cut(s)	625
HgaI	GACGC	1 cut(s)	136
Hin1II	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
HindIII	AAGCTT	2 cut(s)	593, 639
HinfI	GANTC	2 cut(s)	516, 567
HpaII	CCGG	1 cut(s)	625
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	3 cut(s)	151, 238, 550
HpyCH4IV	ACGT	2 cut(s)	61, 251
HpyCH4V	TGCA	8 cut(s)	17, 216, 274, 353, 380, 420, 443, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 209, 386, 426, 449
HpyF3I	CTNAG	2 cut(s)	87, 591
HpySE526I	ACGT	2 cut(s)	61, 251
Hsp92II	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
Kzo9I	GATC	2 cut(s)	82, 90
LmnI	GCTCC	2 cut(s)	336, 658
Lsp1109I	GCAGC	2 cut(s)	212, 404
LweI	GCATC	2 cut(s)	283, 294
MaeI	CTAG	2 cut(s)	204, 368
MaeII	ACGT	2 cut(s)	61, 251
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	2 cut(s)	84, 92
MboI	GATC	2 cut(s)	82, 90
MboII	GAAGA	2 cut(s)	127, 130
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	2 cut(s)	96, 233
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	3, 181, 190, 255, 339, 413, 442, 464
MseI	TTAA	3 cut(s)	36, 297, 585
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	2 cut(s)	480, 633
MvaI	CCWGG	2 cut(s)	480, 633
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	5 cut(s)	197, 209, 386, 426, 449
NdeII	GATC	2 cut(s)	82, 90
NlaIII	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	13
PciI	ACATGT	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	516, 567
PkrI	GCNGC	2 cut(s)	202, 419
PpuMI	RGGWCCY	1 cut(s)	400
PscI	ACATGT	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	478, 631
PspFI	CCCAGC	2 cut(s)	239, 317
PspGI	CCWGG	2 cut(s)	478, 631
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	3 cut(s)	400, 451, 611
PspPPI	RGGWCCY	1 cut(s)	400
PsrI	GAACNNNNNNTAC	2 cut(s)	32, 64
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SaqAI	TTAA	3 cut(s)	36, 297, 585
SatI	GCNGC	2 cut(s)	201, 418
Sau3AI	GATC	2 cut(s)	82, 90
Sau96I	GGNCC	3 cut(s)	400, 451, 611
ScrFI	CCNGG	2 cut(s)	480, 633
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	9 cut(s)	23, 64, 127, 205, 254, 402, 597, 634, 643
SfaNI	GCATC	2 cut(s)	283, 294
SinI	GGWCC	2 cut(s)	400, 611
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	96, 233
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	3 cut(s)	72, 268, 457
SspMI	CTAG	2 cut(s)	204, 368
StuI	AGGCCT	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	478, 631
TaiI	ACGT	2 cut(s)	64, 254
TasI	AATT	2 cut(s)	96, 233
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	2 cut(s)	516, 567
Tru1I	TTAA	3 cut(s)	36, 297, 585
Tru9I	TTAA	3 cut(s)	36, 297, 585
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	200, 417
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	128, 300
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	2 cut(s)	400, 611
XapI	RAATTY	2 cut(s)	96, 233
XceI	RCATGY	1 cut(s)	378
XspI	CTAG	2 cut(s)	204, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.