FvH4_3g40920

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003864
Physical Location & Seq
Forward (+)
34446367 .. 34448098
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40920.t1

Sequence Viewer

Length: 663 bp
ATGGGTCGCCGCCCCGCCCGTTGCTACCGCCAGATCAAAAACAAACCCTACCCCAAGTCCCGCTTCTGCCGCGGAGTCCCCGACCCGAAGATCCGAATCTACGACGTCGGCATGAAGAAGAAAGGCGTCGACGAGTTCCCGTTCTGCGTCCACCTCGTCTCCTGGGAGAAGGAGAACGTCTCCAGCGAGGCTCTCGAGGCGGCGCGTATCGCGTGTAACAAGTACATGGCCAAGTTCGCCGGCAAAGACGCGTTCCATCTACGCGTTAGGGTTCATCCTTTCCATGTGCTCCGCATCAACAAGATGCTCTCCTGCGCCGGAGCCGATAGGCTTCAGACTGGTATGAGGGGAGCGTTTGGGAAGCCTCTTGGGACTTGCGCTAGGGTTGATATCGGACAGGTGTTGCTCTCTGTGAGGTGCAAGGACAGCAACAAGAACAATGCTTGTGAGGCTCTCAGGAGGGCTAAGTTCAAGTTCCCCGGTCGCCAGAAGATCATTGAGAGCAGGAAGTGGGGATTTACCAAGTTCAACCGTGTTGACTATGTGAGATTGAAGTCAGAGAAACGCATCCTTCCTGATGGTGTCAATGCTAAGCTCTTGGGATGCCACGGTTCTTTGGCTCTGCGTAAACCTGGGGAAGCATTCATTGACGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L16

Protein Analysis

221

Amino Acids

24.9

Weight (kDa)

10.22

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L16 PF00252 12 - 166 4.1e-35 Ribosomal protein L16p/L10e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 129
AccII CGCG 5 cut(s) 72, 205, 212, 251, 264
AciI CCGC 8 cut(s) 10, 15, 28, 61, 70, 72, 200, 292
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 2 cut(s) 105, 126
AfaI GTAC 1 cut(s) 224
AflIII ACRYGT 2 cut(s) 249, 262
AgsI TTSAA 3 cut(s) 472, 529, 553
AjnI CCWGG 2 cut(s) 161, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 1 cut(s) 595
AluI AGCT 1 cut(s) 595
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 163, 184
AlwI GGATC 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 653, 656
AspLEI GCGC 3 cut(s) 205, 317, 380
AsuC2I CCSGG 1 cut(s) 480
AvaI CYCGRG 1 cut(s) 194
BalI TGGCCA 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 640, 643
BccI CCATC 2 cut(s) 264, 572
BciT130I CCWGG 2 cut(s) 163, 633
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 163, 184
BfaI CTAG 1 cut(s) 381
BisI GCNGC 5 cut(s) 10, 70, 201, 654, 657
BlpI GCTNAGC 1 cut(s) 591
BlsI GCNGC 5 cut(s) 11, 71, 202, 655, 658
Bme1390I CCNGG 3 cut(s) 163, 480, 633
BmeT110I CYCGRG 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 3 cut(s) 163, 480, 633
BmsI GCATC 4 cut(s) 294, 303, 576, 593
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 166
Bpu1102I GCTNAGC 1 cut(s) 591
BpuMI CCSGG 1 cut(s) 480
BsaBI GATNNNNATC 1 cut(s) 95
BsaHI GRCGYC 2 cut(s) 105, 126
BsaJI CCNNGG 5 cut(s) 70, 162, 478, 607, 632
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 95
BseBI CCWGG 2 cut(s) 163, 633
BseDI CCNNGG 5 cut(s) 70, 162, 478, 607, 632
BseGI GGATG 3 cut(s) 274, 567, 608
BseJI GATNNNNATC 1 cut(s) 95
BseMII CTCAG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 640, 643
Bsh1236I CGCG 5 cut(s) 72, 205, 212, 251, 264
Bsh1285I CGRYCG 1 cut(s) 484
BshFI GGCC 1 cut(s) 230
BsiEI CGRYCG 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 240, 318, 480
BslFI GGGAC 3 cut(s) 43, 62, 385
BsmAI GTCTC 2 cut(s) 163, 184
BsmBI CGTCTC 2 cut(s) 163, 184
BsmFI GGGAC 3 cut(s) 43, 62, 385
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 3 cut(s) 33, 90, 492
Bsp1720I GCTNAGC 1 cut(s) 591
BspACI CCGC 8 cut(s) 10, 15, 28, 61, 70, 72, 200, 292
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 468
BspFNI CGCG 5 cut(s) 72, 205, 212, 251, 264
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 5 cut(s) 70, 162, 478, 607, 632
BssMI GATC 3 cut(s) 33, 90, 492
BssNI GRCGYC 2 cut(s) 105, 126
Bst2UI CCWGG 2 cut(s) 163, 633
Bst4CI ACNGT 2 cut(s) 533, 611
BstACI GRCGYC 2 cut(s) 105, 126
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 4 cut(s) 455, 465, 591, 660
BstDSI CCRYGG 2 cut(s) 70, 607
BstF5I GGATG 3 cut(s) 274, 567, 608
BstFNI CGCG 5 cut(s) 72, 205, 212, 251, 264
BstHHI GCGC 3 cut(s) 205, 317, 380
BstKTI GATC 3 cut(s) 36, 93, 495
BstMAI GTCTC 2 cut(s) 163, 184
BstMBI GATC 3 cut(s) 33, 90, 492
BstMCI CGRYCG 1 cut(s) 484
BstMWI GCNNNNNNNGC 6 cut(s) 69, 197, 209, 236, 426, 449
BstNI CCWGG 2 cut(s) 163, 633
BstSCI CCNGG 3 cut(s) 161, 478, 631
BstUI CGCG 5 cut(s) 72, 205, 212, 251, 264
BstV1I GCAGC 2 cut(s) 640, 643
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 1 cut(s) 230
BtgI CCRYGG 2 cut(s) 70, 607
BtsCI GGATG 3 cut(s) 274, 567, 608
Cac8I GCNNGC 1 cut(s) 241
CfoI GCGC 3 cut(s) 205, 317, 380
Cfr10I RCCGGY 1 cut(s) 239
Cfr42I CCGCGG 1 cut(s) 73
CseI GACGC 3 cut(s) 115, 136, 257
Csp6I GTAC 1 cut(s) 223
CviAII CATG 3 cut(s) 112, 226, 284
CviJI RGCY 9 cut(s) 191, 230, 323, 331, 364, 452, 464, 595, 620
CviKI_1 RGCY 9 cut(s) 191, 230, 323, 331, 364, 452, 464, 595, 620
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 4 cut(s) 455, 465, 591, 660
DpnI GATC 3 cut(s) 35, 92, 494
DpnII GATC 3 cut(s) 33, 90, 492
EaeI YGGCCR 1 cut(s) 228
Eco32I GATATC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 161, 631
EcoRV GATATC 1 cut(s) 391
Esp3I CGTCTC 2 cut(s) 163, 184
FaeI CATG 3 cut(s) 115, 229, 287
FaiI YATR 5 cut(s) 113, 227, 285, 344, 543
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FaqI GGGAC 3 cut(s) 43, 62, 385
FatI CATG 3 cut(s) 111, 225, 283
FauI CCCGC 2 cut(s) 22, 68
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 5 cut(s) 10, 70, 201, 654, 657
FokI GGATG 3 cut(s) 261, 554, 615
Fsp4HI GCNGC 5 cut(s) 10, 70, 201, 654, 657
FspBI CTAG 1 cut(s) 381
GlaI GCGC 3 cut(s) 204, 316, 379
GluI GCNGC 5 cut(s) 10, 70, 201, 654, 657
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 230
HapII CCGG 3 cut(s) 240, 318, 480
HgaI GACGC 3 cut(s) 115, 136, 257
HhaI GCGC 3 cut(s) 205, 317, 380
Hin1I GRCGYC 2 cut(s) 105, 126
Hin1II CATG 3 cut(s) 115, 229, 287
Hin6I GCGC 3 cut(s) 203, 315, 378
HinP1I GCGC 3 cut(s) 203, 315, 378
HincII GTYRAC 2 cut(s) 130, 538
HindII GTYRAC 2 cut(s) 130, 538
HinfI GANTC 2 cut(s) 75, 96
HpaII CCGG 3 cut(s) 240, 318, 480
Hpy166II GTNNAC 4 cut(s) 130, 151, 538, 629
Hpy188I TCNGA 4 cut(s) 95, 336, 395, 559
Hpy188III TCNNGA 3 cut(s) 194, 457, 575
Hpy8I GTNNAC 4 cut(s) 130, 151, 538, 629
Hpy99I CGWCG 4 cut(s) 107, 110, 131, 134
HpyAV CCTTC 2 cut(s) 163, 581
HpyCH4III ACNGT 2 cut(s) 533, 611
HpyCH4IV ACGT 2 cut(s) 105, 177
HpyCH4V TGCA 1 cut(s) 420
HpyF10VI GCNNNNNNNGC 6 cut(s) 69, 197, 209, 236, 426, 449
HpyF3I CTNAG 4 cut(s) 455, 465, 591, 660
HpySE526I ACGT 2 cut(s) 105, 177
Hsp92I GRCGYC 2 cut(s) 105, 126
Hsp92II CATG 3 cut(s) 115, 229, 287
HspAI GCGC 3 cut(s) 203, 315, 378
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 3 cut(s) 33, 90, 492
LmnI GCTCC 3 cut(s) 294, 320, 350
Lsp1109I GCAGC 2 cut(s) 640, 643
LweI GCATC 4 cut(s) 294, 303, 576, 593
MaeI CTAG 1 cut(s) 381
MaeII ACGT 2 cut(s) 105, 177
MaeIII GTNAC 1 cut(s) 215
MalI GATC 3 cut(s) 35, 92, 494
MboI GATC 3 cut(s) 33, 90, 492
MboII GAAGA 4 cut(s) 100, 127, 130, 502
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 230
MluI ACGCGT 2 cut(s) 249, 262
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 8 cut(s) 164, 181, 190, 339, 375, 408, 442, 453
Mox20I TGGCCA 1 cut(s) 230
MroNI GCCGGC 1 cut(s) 239
MscI TGGCCA 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 3 cut(s) 240, 318, 480
MspR9I CCNGG 3 cut(s) 163, 480, 633
Mva1269I GAATGC 1 cut(s) 641
MvaI CCWGG 2 cut(s) 163, 633
MvnI CGCG 5 cut(s) 72, 205, 212, 251, 264
MwoI GCNNNNNNNGC 6 cut(s) 69, 197, 209, 236, 426, 449
NaeI GCCGGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 480
NdeII GATC 3 cut(s) 33, 90, 492
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 3 cut(s) 115, 229, 287
NlaIV GGNNCC 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 641
PdiI GCCGGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 5 cut(s) 11, 71, 202, 655, 658
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp6I CCWGG 2 cut(s) 161, 631
PspGI CCWGG 2 cut(s) 161, 631
PspN4I GGNNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SacII CCGCGG 1 cut(s) 73
SalI GTCGAC 1 cut(s) 128
SatI GCNGC 5 cut(s) 10, 70, 201, 654, 657
Sau3AI GATC 3 cut(s) 33, 90, 492
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 3 cut(s) 163, 480, 633
SduI GDGCHC 1 cut(s) 291
SetI ASST 7 cut(s) 108, 156, 180, 402, 419, 597, 634
SfaNI GCATC 4 cut(s) 294, 303, 576, 593
Sfr274I CTCGAG 1 cut(s) 194
Sfr303I CCGCGG 1 cut(s) 73
SgrBI CCGCGG 1 cut(s) 73
SgrDI CGTCGACG 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SsiI CCGC 8 cut(s) 10, 15, 28, 61, 70, 72, 200, 292
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 161, 478, 631
TaaI ACNGT 2 cut(s) 533, 611
TaiI ACGT 2 cut(s) 108, 180
TaqI TCGA 2 cut(s) 129, 195
TatI WGTACW 1 cut(s) 222
TauI GCSGC 3 cut(s) 12, 72, 203
TfiI GAWTC 1 cut(s) 96
TseI GCWGC 2 cut(s) 653, 656
TspDTI ATGAA 3 cut(s) 128, 263, 634
XhoI CTCGAG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 1 cut(s) 381
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.