AT1G14470

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006232
Physical Location & Seq
Forward (+)
4954037 .. 4955702
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14470.1

Sequence Viewer

Length: 1623 bp
ATGTCTCGAGAGCTCACTGTATCTCTTGCCGCCATAGCTTCACAAGCTCTAACATTTCCTCAATTAAACCAAATCCATGCTCAGCTCATTGTATTCAATTCTCTTCCTCGACAAAGCTACTGGGCTTCGCGTATAATCAGCTGCTGCACGCGCCTCCGTGCGCCGTCTTACTACACGCGGCTCATTTTCGATTCAGTGACATTCCCTAATGTCTTCGTTGTCAATTCCATGTTTAAATACTTCTCGAAGATGGATATGGCGAATGATGTTCTTCGTCTGTATGAACAAAGATCTCGTTGTGGGATTATGCCTGACGCTTTTTCTTTCCCTGTTGTGATCAAATCGGCTGGGAGATTCGGGATTTTGTTTCAGGCCCTTGTTGAGAAGTTGGGATTTTTTAAGGACCCTTATGTGAGGAATGTGATAATGGATATGTATGTGAAGCATGAGTCAGTGGAGAGTGCACGCAAAGTGTTCGATCAAATTTCTCAGAGAAAGGGTTCTGACTGGAATGTGATGATTTCTGGGTATTGGAAATGGGGAAACAAGGAGGAAGCTTGTAAGTTGTTCGATATGATGCCAGAGAATGATGTGGTTTCTTGGACGGTGATGATTACTGGTTTTGCAAAGGTTAAGGATTTGGAAAATGCGAGGAAGTATTTTGATCGGATGCCGGAGAAGAGTGTTGTTTCTTGGAACGCTATGCTTTCAGGTTATGCTCAAAATGGTTTTACAGAGGATGCTCTGAGATTGTTTAACGATATGTTGAGACTTGGAGTTAGGCCAAATGAGACCACATGGGTCATTGTTATTTCCGCATGTTCTTTCCGTGCTGATCCTTCCCTCACTCGTTCACTAGTAAAACTGATTGATGAGAAGAGAGTCCGTTTGAATTGCTTTGTGAAGACAGCATTGCTTGATATGCATGCTAAGTGCAGAGATATTCAATCTGCTAGAAGAATTTTCAACGAGTTAGGTACGCAGAGGAATCTTGTGACTTGGAATGCTATGATATCTGGATACACTAGAATCGGGGATATGAGTTCGGCTAGGCAGCTTTTTGATACAATGCCTAAGCGAAATGTTGTTTCTTGGAATTCTCTGATAGCTGGGTATGCTCACAACGGGCAAGCTGCACTAGCCATTGAGTTTTTCGAAGATATGATTGATTATGGAGATTCCAAACCGGATGAAGTAACAATGATTAGTGTTCTCTCGGCTTGTGGACACATGGCTGATCTAGAATTGGGTGATTGCATTGTAGATTACATTCGTAAGAACCAAATCAAGCTTAATGATTCAGGATACAGGTCTTTGATCTTCATGTATGCTAGGGGTGGAAACCTGTGGGAAGCAAAACGGGTGTTTGACGAAATGAAGGAAAGAGATGTTGTCTCTTATAACACTTTATTCACAGCTTTTGCAGCTAACGGAGACGGGGTTGAAACGCTGAATTTACTCTCAAAGATGAAAGACGAAGGTATTGAGCCTGACCGTGTGACTTACACTAGTGTCTTGACGGCTTGTAACCGTGCAGGATTACTCAAAGAAGGCCAGAGAATATTCAAATCAATAAGAAATCCACTGGCGGATCATTATGCTTGTATGGATTTGTTGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

540

Amino Acids

61.74

Weight (kDa)

8.79

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 69 - 114 4.8e-06 PPR repeat family
PPR PF01535 170 - 197 1.1e-06 PPR repeat
PPR PF01535 199 - 228 7.9e-06 PPR repeat
PPR_2 PF13041 228 - 274 3.2e-14 PPR repeat family
PPR PF01535 230 - 260 1.5e-09 PPR repeat
PPR_1 PF12854 328 - 357 9.6e-06 PPR repeat
PPR_2 PF13041 330 - 362 6.7e-08 PPR repeat family
PPR PF01535 332 - 362 1.7e-07 PPR repeat
PPR_2 PF13041 360 - 409 1.5e-09 PPR repeat family
PPR PF01535 363 - 392 1.8e-06 PPR repeat
PPR_2 PF13041 462 - 509 2.7e-13 PPR repeat family
PPR_3 PF13812 463 - 509 1.9e-08 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1401
AccII CGCG 3 cut(s) 130, 151, 178
AciI CCGC 4 cut(s) 30, 178, 816, 1589
AclWI GGATC 2 cut(s) 830, 1599
AcsI RAATTY 4 cut(s) 483, 960, 1096, 1453
AfaI GTAC 1 cut(s) 979
AgsI TTSAA 6 cut(s) 97, 892, 947, 967, 1445, 1567
AhlI ACTAGT 2 cut(s) 856, 1508
Alw21I GWGCWC 2 cut(s) 15, 466
Alw26I GTCTC 5 cut(s) 9, 763, 785, 1399, 1428
Alw44I GTGCAC 1 cut(s) 462
AlwI GGATC 2 cut(s) 830, 1599
AlwNI CAGNNNCTG 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 3 cut(s) 372, 782, 1552
ApaLI GTGCAC 1 cut(s) 462
ApeKI GCWGC 5 cut(s) 141, 144, 1054, 1133, 1424
ApoI RAATTY 4 cut(s) 483, 960, 1096, 1453
Asp700I GAANNNNTTC 1 cut(s) 499
AspLEI GCGC 3 cut(s) 153, 163, 1620
AspS9I GGNCC 2 cut(s) 373, 403
AsuHPI GGTGA 2 cut(s) 619, 1262
AsuII TTCGAA 1 cut(s) 1155
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 2 cut(s) 205, 911
Bbv12I GWGCWC 2 cut(s) 15, 466
BbvI GCAGC 5 cut(s) 128, 131, 1066, 1120, 1436
BccI CCATC 1 cut(s) 244
BceAI ACGGC 2 cut(s) 148, 1536
BcgI CGANNNNNNTGC 2 cut(s) 457, 491
BciVI GTATCC 2 cut(s) 1013, 1298
BclI TGATCA 1 cut(s) 336
BcoDI GTCTC 5 cut(s) 9, 763, 785, 1399, 1428
BcuI ACTAGT 2 cut(s) 856, 1508
BfaI CTAG 8 cut(s) 857, 954, 1026, 1050, 1139, 1241, 1332, 1509
BfuI GTATCC 2 cut(s) 1013, 1298
BglII AGATCT 1 cut(s) 290
BisI GCNGC 7 cut(s) 30, 142, 145, 179, 1055, 1134, 1425
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 7 cut(s) 31, 143, 146, 180, 1056, 1135, 1426
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 2 cut(s) 373, 403
BmiI GGNNCC 1 cut(s) 405
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 3 cut(s) 567, 660, 730
BmuI ACTGGG 1 cut(s) 130
BpiI GAAGAC 2 cut(s) 205, 911
Bpu10I CCTNAGC 1 cut(s) 1074
Bpu1102I GCTNAGC 1 cut(s) 81
Bpu14I TTCGAA 1 cut(s) 1155
BsaI GGTCTC 1 cut(s) 785
BsaWI WCCGGW 1 cut(s) 1186
BsaXI ACNNNNNCTCC 2 cut(s) 1425, 1455
Bse1I ACTGG 4 cut(s) 125, 512, 622, 1590
Bse3DI GCAATG 1 cut(s) 911
BseGI GGATG 3 cut(s) 675, 745, 1195
BseMI GCAATG 1 cut(s) 911
BseMII CTCAG 3 cut(s) 95, 503, 737
BseNI ACTGG 4 cut(s) 125, 512, 622, 1590
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 5 cut(s) 128, 131, 1066, 1120, 1436
BseYI CCCAGC 2 cut(s) 347, 1109
BsgI GTGCAG 4 cut(s) 130, 955, 1119, 1554
Bsh1236I CGCG 3 cut(s) 130, 151, 178
BshFI GGCC 3 cut(s) 374, 784, 1554
BsiHKAI GWGCWC 2 cut(s) 15, 466
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 2 cut(s) 674, 1187
BsmAI GTCTC 5 cut(s) 9, 763, 785, 1399, 1428
BsmBI CGTCTC 1 cut(s) 1428
BsmI GAATGC 1 cut(s) 1009
BsnI GGCC 3 cut(s) 374, 784, 1554
Bso31I GGTCTC 1 cut(s) 785
BsoBI CYCGRG 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 1155
Bsp1286I GDGCHC 2 cut(s) 15, 466
Bsp143I GATC 8 cut(s) 290, 336, 478, 664, 835, 1237, 1317, 1591
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 4 cut(s) 30, 178, 816, 1589
BspANI GGCC 3 cut(s) 374, 784, 1554
BspCNI CTCAG 3 cut(s) 94, 502, 738
BspFNI CGCG 3 cut(s) 130, 151, 178
BspLI GGNNCC 1 cut(s) 405
BspPI GGATC 2 cut(s) 830, 1599
BspT104I TTCGAA 1 cut(s) 1155
BspTNI GGTCTC 1 cut(s) 785
BsrDI GCAATG 1 cut(s) 911
BsrI ACTGG 4 cut(s) 125, 512, 622, 1590
BssMI GATC 8 cut(s) 290, 336, 478, 664, 835, 1237, 1317, 1591
Bst4CI ACNGT 4 cut(s) 19, 607, 1496, 1532
Bst6I CTCTTC 3 cut(s) 108, 674, 872
BstBI TTCGAA 1 cut(s) 1155
BstC8I GCNNGC 4 cut(s) 149, 466, 927, 1131
BstDEI CTNAG 5 cut(s) 81, 489, 746, 930, 1074
BstF5I GGATG 3 cut(s) 675, 745, 1195
BstFNI CGCG 3 cut(s) 130, 151, 178
BstHHI GCGC 3 cut(s) 153, 163, 1620
BstKTI GATC 8 cut(s) 293, 339, 481, 667, 838, 1240, 1320, 1594
BstMAI GTCTC 5 cut(s) 9, 763, 785, 1399, 1428
BstMBI GATC 8 cut(s) 290, 336, 478, 664, 835, 1237, 1317, 1591
BstMWI GCNNNNNNNGC 7 cut(s) 35, 44, 150, 922, 1115, 1139, 1424
BstNSI RCATGY 2 cut(s) 822, 929
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 3 cut(s) 130, 151, 178
BstV1I GCAGC 5 cut(s) 128, 131, 1066, 1120, 1436
BstV2I GAAGAC 2 cut(s) 205, 911
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuI GTATCC 2 cut(s) 1013, 1298
BsuRI GGCC 3 cut(s) 374, 784, 1554
BtsCI GGATG 3 cut(s) 675, 745, 1195
BtsIMutI CAGTG 4 cut(s) 15, 201, 459, 1583
Cac8I GCNNGC 4 cut(s) 149, 466, 927, 1131
CaiI CAGNNNCTG 1 cut(s) 144
CfoI GCGC 3 cut(s) 153, 163, 1620
Cfr13I GGNCC 2 cut(s) 373, 403
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 978
CviAII CATG 8 cut(s) 77, 229, 446, 798, 819, 926, 1231, 1324
CviQI GTAC 1 cut(s) 978
DdeI CTNAG 5 cut(s) 81, 489, 746, 930, 1074
DpnI GATC 8 cut(s) 292, 338, 480, 666, 837, 1239, 1319, 1593
DpnII GATC 8 cut(s) 290, 336, 478, 664, 835, 1237, 1317, 1591
DraI TTTAAA 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 108, 674, 872
EarI CTCTTC 3 cut(s) 108, 674, 872
EciI GGCGGA 1 cut(s) 1604
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 785
Eco32I GATATC 1 cut(s) 1014
Eco47I GGWCC 1 cut(s) 403
Eco53kI GAGCTC 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 13
EcoO109I RGGNCCY 2 cut(s) 373, 403
EcoRI GAATTC 1 cut(s) 1096
EcoRV GATATC 1 cut(s) 1014
EcoT22I ATGCAT 1 cut(s) 927
EcoT38I GRGCYC 1 cut(s) 15
Esp3I CGTCTC 1 cut(s) 1428
FaeI CATG 8 cut(s) 80, 232, 449, 801, 822, 929, 1234, 1327
FatI CATG 8 cut(s) 76, 228, 445, 797, 818, 925, 1230, 1323
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 7 cut(s) 30, 142, 145, 179, 1055, 1134, 1425
FokI GGATG 3 cut(s) 682, 752, 1202
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 7 cut(s) 30, 142, 145, 179, 1055, 1134, 1425
FspBI CTAG 8 cut(s) 857, 954, 1026, 1050, 1139, 1241, 1332, 1509
GlaI GCGC 3 cut(s) 152, 162, 1619
GluI GCNGC 7 cut(s) 30, 142, 145, 179, 1055, 1134, 1425
GsaI CCCAGC 2 cut(s) 351, 1113
HaeIII GGCC 3 cut(s) 374, 784, 1554
HapII CCGG 2 cut(s) 674, 1187
HgaI GACGC 1 cut(s) 323
HhaI GCGC 3 cut(s) 153, 163, 1620
Hin1II CATG 8 cut(s) 80, 232, 449, 801, 822, 929, 1234, 1327
Hin6I GCGC 3 cut(s) 151, 161, 1618
HinP1I GCGC 3 cut(s) 151, 161, 1618
HindIII AAGCTT 2 cut(s) 555, 1289
HinfI GANTC 8 cut(s) 191, 354, 449, 882, 988, 1029, 1178, 1298
HpaII CCGG 2 cut(s) 674, 1187
HphI GGTGA 2 cut(s) 619, 1262
Hpy166II GTNNAC 3 cut(s) 464, 854, 1226
Hpy188I TCNGA 5 cut(s) 492, 505, 669, 747, 1104
Hpy188III TCNNGA 8 cut(s) 6, 8, 244, 358, 1017, 1241, 1302, 1516
Hpy8I GTNNAC 3 cut(s) 464, 854, 1226
HpyAV CCTTC 4 cut(s) 849, 1372, 1472, 1544
HpyCH4III ACNGT 4 cut(s) 19, 607, 1496, 1532
HpyCH4V TGCA 9 cut(s) 147, 464, 626, 925, 936, 1136, 1257, 1424, 1535
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 44, 150, 922, 1115, 1139, 1424
HpyF3I CTNAG 5 cut(s) 81, 489, 746, 930, 1074
Hsp92II CATG 8 cut(s) 80, 232, 449, 801, 822, 929, 1234, 1327
HspAI GCGC 3 cut(s) 151, 161, 1618
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 8 cut(s) 290, 336, 478, 664, 835, 1237, 1317, 1591
Lsp1109I GCAGC 5 cut(s) 128, 131, 1066, 1120, 1436
LweI GCATC 3 cut(s) 567, 660, 730
MaeI CTAG 8 cut(s) 857, 954, 1026, 1050, 1139, 1241, 1332, 1509
MaeIII GTNAC 5 cut(s) 196, 994, 1195, 1498, 1526
MalI GATC 8 cut(s) 292, 338, 480, 666, 837, 1239, 1319, 1593
MboI GATC 8 cut(s) 290, 336, 478, 664, 835, 1237, 1317, 1591
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 2 cut(s) 15, 466
MluCI AATT 9 cut(s) 62, 97, 223, 483, 892, 960, 1096, 1244, 1453
MlyI GAGTC 2 cut(s) 458, 891
MnlI CCTC 9 cut(s) 69, 117, 164, 408, 544, 645, 730, 854, 978
Mph1103I ATGCAT 1 cut(s) 927
MroXI GAANNNNTTC 1 cut(s) 499
MseI TTAA 6 cut(s) 65, 234, 399, 633, 756, 1293
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 2 cut(s) 674, 1187
Mva1269I GAATGC 1 cut(s) 1009
MvnI CGCG 3 cut(s) 130, 151, 178
MwoI GCNNNNNNNGC 7 cut(s) 35, 44, 150, 922, 1115, 1139, 1424
NdeII GATC 8 cut(s) 290, 336, 478, 664, 835, 1237, 1317, 1591
NlaIII CATG 8 cut(s) 80, 232, 449, 801, 822, 929, 1234, 1327
NlaIV GGNNCC 1 cut(s) 405
NmeAIII GCCGAG 1 cut(s) 1196
NmuCI GTSAC 3 cut(s) 196, 994, 1498
NsiI ATGCAT 1 cut(s) 927
NspI RCATGY 2 cut(s) 822, 929
NspV TTCGAA 1 cut(s) 1155
PaeI GCATGC 1 cut(s) 929
PaeR7I CTCGAG 1 cut(s) 6
PctI GAATGC 1 cut(s) 1009
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 6 cut(s) 191, 354, 988, 1029, 1178, 1298
PkrI GCNGC 7 cut(s) 31, 143, 146, 180, 1056, 1135, 1426
PleI GAGTC 2 cut(s) 457, 890
PpsI GAGTC 2 cut(s) 457, 890
PpuMI RGGWCCY 1 cut(s) 403
PsiI TTATAA 1 cut(s) 1401
Psp124BI GAGCTC 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 403
PspFI CCCAGC 2 cut(s) 347, 1109
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 2 cut(s) 373, 403
PspPPI RGGWCCY 1 cut(s) 403
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 141
RsaI GTAC 1 cut(s) 979
RsaNI GTAC 1 cut(s) 978
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 6 cut(s) 65, 234, 399, 633, 756, 1293
SatI GCNGC 7 cut(s) 30, 142, 145, 179, 1055, 1134, 1425
Sau3AI GATC 8 cut(s) 290, 336, 478, 664, 835, 1237, 1317, 1591
Sau96I GGNCC 2 cut(s) 373, 403
SchI GAGTC 2 cut(s) 458, 891
SduI GDGCHC 2 cut(s) 15, 466
SfaNI GCATC 3 cut(s) 567, 660, 730
Sfr274I CTCGAG 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 1155
SinI GGWCC 1 cut(s) 403
SlaI CTCGAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SpeI ACTAGT 2 cut(s) 856, 1508
SphI GCATGC 1 cut(s) 929
Sse9I AATT 9 cut(s) 62, 97, 223, 483, 892, 960, 1096, 1244, 1453
SsiI CCGC 4 cut(s) 30, 178, 816, 1589
SspI AATATT 1 cut(s) 1563
SspMI CTAG 8 cut(s) 857, 954, 1026, 1050, 1139, 1241, 1332, 1509
SstI GAGCTC 1 cut(s) 15
TaaI ACNGT 4 cut(s) 19, 607, 1496, 1532
TaqI TCGA 7 cut(s) 7, 109, 189, 245, 477, 570, 1155
TasI AATT 9 cut(s) 62, 97, 223, 483, 892, 960, 1096, 1244, 1453
TauI GCSGC 2 cut(s) 32, 181
TfiI GAWTC 6 cut(s) 191, 354, 988, 1029, 1178, 1298
Tru1I TTAA 6 cut(s) 65, 234, 399, 633, 756, 1293
Tru9I TTAA 6 cut(s) 65, 234, 399, 633, 756, 1293
TscAI CASTG 4 cut(s) 22, 201, 459, 1590
TseFI GTSAC 3 cut(s) 196, 994, 1498
TseI GCWGC 5 cut(s) 141, 144, 1054, 1133, 1424
Tsp45I GTSAC 3 cut(s) 196, 994, 1498
TspDTI ATGAA 5 cut(s) 297, 1206, 1312, 1391, 1484
TspGWI ACGGA 4 cut(s) 146, 818, 875, 1446
TspRI CASTG 4 cut(s) 22, 201, 459, 1590
VneI GTGCAC 1 cut(s) 462
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 4 cut(s) 483, 960, 1096, 1453
XbaI TCTAGA 1 cut(s) 1240
XceI RCATGY 2 cut(s) 822, 929
XhoI CTCGAG 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 8 cut(s) 857, 954, 1026, 1050, 1139, 1241, 1332, 1509
Zsp2I ATGCAT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.