FvH4_5g27410

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006232
Physical Location & Seq
Reverse (-)
18679787 .. 18682081
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27410.t1

Sequence Viewer

Length: 2295 bp
ATGTCACTCCTACAGTTGGAAACCTCTCTATCCAAAATAAGCAACGTAAGCCAGTTGAGGCAGCTCCATGCCCACCTCTTTCAAAAGTCCGTCCACCACCAAAACCACTGGGTCTCATTCCTCATCAACCAATGCACGCGCCTCCGTGCACCGCCACCCTACACCCGTCTCATCTTCGACTCCACCCCTCACCCCAACATCCATGTCTTCACCTCCATGCTCCAATTCTACGCTCCTTTGGGCAATGTCTACTCCAACCAAGTTGTTTCACTCTATCAACAAATGCAGCGCCGTGAGGACATATGGCTCGGTACCTTTGTGTACCCACTTTTGATCAAATCCTCCGGCCTTGCCGGCATTGCGTTCCACGCGCATGTTGTGAAGCTGGGTCTTGTTTCTGATCGATATGTTCGCAATGCCGTTATGAGTGTGTACTCGAAATATGGGCCGGTTGAGCATGCCCGGAAGGTGTTCGAAGAAATGCCTGAGAGGAGTTTGGTGGATTGGAATAACATGGTTTCTGGGTATTGGAAGTGGGGGGATAAAGTTGAAGCGTGTAAGCTGTTTGATATGATGCCTGAGAAGGATGTTGTTTCTTGGACTGCTATGGTTACAGGGTACGCTAGGATGAAGGATTTGGAGAATGCGAGGAGGTGTTTTGATGATGTTCCGGAGAAAAATGTGGTGTCGTGGAACGCAATGCTCTCGGCTTATGCTCAGAATGGATGTCCTGAGGAGGCTTTGAGGTTGTTTGATGACATGATGGATTCTGGAGTTCAACCAAATGAAACCACATGGGCAGTTGTCATTTCAGCGTGTTCGTCGTGTGGTGATAGTTCTGTTGTAGACTCGTTTATCCAAAAGCTCAATCAGAAGCGGATGCATTTGAGTTATTTTGGGAAAACTGCGATGCTTGATATGTATGCAAAGCGTGGGAGCATCGAGAGAGCTAGAGAAGTTTTTGATGAATTGGGGGTGTATAAGAGCTCTGGTACATGGAATGCTATGATATCAGCATATGCAAGAGTTGGGGATTTGACTTCAGCTCGAGAGCTCTTTGATAAAATGCTGGAAAGAGATGTCATCTCATGGAACTCAATGATATCTGGTTATGCTCAGAACGGACAGTCCGCTCTTGCTATTGATCTCTTTAAAGATATGACTGCTTCTAATAACCCCAAACCAAATGAAGTCACTATGGCAAGTGTTATCTCAGCATGTGGCCATCTTGGAGCATTGGAAATAGGAAATTGGGCCGTCAACTTTCTCACGAAACATCATATCAATCCAAGTATATCAGTTTACAATTCTTTGATATCCTTGTACTCTAAATGTGGAAGCATGGATGATGCAAAGAGAATATTCGATGAAATAAAAAACCGAGATGTGGTTTCCTACAATGCATTGATTTCAGGGTTTGCGGCTCATGGTCATGGAATGGAAGCTGTCAAGCTAATGATGAAGATGAAAGAAGAATTTTTGGAGCCAAACCGTGAAACATATATTGGTATTCTGACAGCGTGCAGCCATGCCGGGTTGTTAGAAGAAGGTCAAAAGATCTTTGAGTCAATCAAAGATCCTGATGTAGATCATTATGCATGCCTGGTTGATTTATTAGGTCGGGTTGGTAAAGTAGATGAGGCAAAAAATATAGTTGATGGCATGCAGAAAGAGCCCCATGCTGGAGTTTATGGATCTCTTTTAAATGCTAGCCGGATTCACAAAAGAATCGATCTTGCCGAGTTTGCTGCAAGCGAGCTCTTTGAGCTTGAACCACATAATTCAGGAAACTACATTTTGCTTTCAAACATGTATGCCTCTGCAGGCAGGTGGGATGATGTGGTGAGAGTTAGAGAAGCAATGAGAAATGCAGGTGTGAAAAAGGCAACTGGCTGGAGTTGGGTGGAATACAATGGTAAGATGCACAAGTTCATTGCAGGAGACAGATCACATGAGATGTCGGATGAAATTTATAGGCTATTGGCAGAATTGGGGAGGAAGCTCAGGAATTCTGGCTACATTGCTGATAAGGCCTGTGTGCTAAGAGATGTTGATGAGGAAGAGAAAGAAGAGATGGTGGGTACTCATAGTGAAAAACTGGCGGTATGCTTCGCTCTTCTTGTTACAGAACCAAAGTCAGTGATTAGAGTGGTGAAGAATCTGAGGGTGTGCAGGGATTGCCATACAGCTATTAAGATGATCTCTATGTTGGAAGGAAGGAAAATTATTTTGAGGGATAATAACAGGTTTCACCATTTCAGTGATGGACAATGTTCATGCGGAGACTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

765

Amino Acids

86.41

Weight (kDa)

6.63

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 226 - 274 7.9e-15 PPR repeat family
PPR_3 PF13812 227 - 273 9.4e-06 Pentatricopeptide repeat domain
PPR PF01535 229 - 259 3.6e-10 PPR repeat
PPR_2 PF13041 330 - 360 9.5e-06 PPR repeat family
PPR PF01535 332 - 360 3.7e-08 PPR repeat
PPR_long PF17177 336 - 501 9.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 359 - 408 1.3e-10 PPR repeat family
PPR PF01535 362 - 389 4.6e-07 PPR repeat
PPR PF01535 434 - 462 1.5e-06 PPR repeat
PPR_3 PF13812 460 - 508 4e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 461 - 509 5.3e-11 PPR repeat family
E_motif PF20431 574 - 636 6.8e-22 E motif
Eplus_motif PF20430 642 - 668 4.6e-06 E+ motif
DYW_deaminase PF14432 672 - 764 1.6e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1818, 1862
Acc36I ACCTGC 2 cut(s) 1818, 1862
Acc65I GGTACC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 311
AccBSI CCGCTC 1 cut(s) 1133
AccI GTMKAC 2 cut(s) 249, 846
AccII CGCG 2 cut(s) 139, 371
AccIII TCCGGA 1 cut(s) 670
AciI CCGC 6 cut(s) 152, 877, 1131, 1421, 2102, 2280
AclWI GGATC 2 cut(s) 1571, 1702
AcoI YGGCCR 1 cut(s) 1222
AcsI RAATTY 3 cut(s) 1475, 1968, 2008
AcuI CTGAAG 1 cut(s) 1026
AfaI GTAC 7 cut(s) 313, 323, 434, 620, 994, 1325, 2083
AfiI CCNNNNNNNGG 3 cut(s) 16, 1387, 1682
AflIII ACRYGT 1 cut(s) 1809
AgsI TTSAA 5 cut(s) 83, 551, 779, 1772, 1806
AjnI CCWGG 1 cut(s) 1602
AjuI GAANNNNNNNTTGG 2 cut(s) 1488, 1520
AloI GAACNNNNNNTCC 2 cut(s) 1112, 1144
Alw21I GWGCWC 4 cut(s) 151, 989, 1056, 1761
Alw26I GTCTC 4 cut(s) 118, 173, 1935, 2277
Alw44I GTGCAC 1 cut(s) 147
AlwI GGATC 2 cut(s) 1571, 1702
Ama87I CYCGRG 1 cut(s) 1047
Aor13HI TCCGGA 1 cut(s) 670
AoxI GGCC 5 cut(s) 346, 446, 1222, 1254, 2031
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 4 cut(s) 61, 286, 1524, 1748
ApoI RAATTY 3 cut(s) 1475, 1968, 2008
Asp700I GAANNNNTTC 1 cut(s) 470
Asp718I GGTACC 1 cut(s) 311
AspLEI GCGC 3 cut(s) 141, 291, 373
AspS9I GGNCC 2 cut(s) 446, 1254
AsuC2I CCSGG 2 cut(s) 463, 1534
AsuHPI GGTGA 6 cut(s) 182, 202, 842, 1855, 2164, 2243
AsuII TTCGAA 1 cut(s) 474
AsuNHI GCTAGC 1 cut(s) 1709
AvaI CYCGRG 1 cut(s) 1047
AxyI CCTNAGG 1 cut(s) 732
BaeGI GKGCMC 1 cut(s) 151
BaeI ACNNNNGTAYC 2 cut(s) 303, 336
BalI TGGCCA 1 cut(s) 1224
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 4 cut(s) 989, 1056, 1677, 1761
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 4 cut(s) 151, 989, 1056, 1761
BbvI GCAGC 4 cut(s) 73, 298, 1536, 1735
BccI CCATC 5 cut(s) 757, 1233, 1652, 2068, 2258
BceAI ACGGC 3 cut(s) 276, 404, 1241
BcgI CGANNNNNNTGC 4 cut(s) 687, 721, 1730, 1764
BciT130I CCWGG 1 cut(s) 1604
BclI TGATCA 1 cut(s) 333
BcnI CCSGG 2 cut(s) 463, 1534
BcoDI GTCTC 4 cut(s) 118, 173, 1935, 2277
BfaI CTAG 3 cut(s) 624, 951, 1710
BfmI CTRYAG 2 cut(s) 11, 1821
BfoI RGCGCY 1 cut(s) 292
BfuAI ACCTGC 2 cut(s) 1818, 1862
BglI GCCNNNNNGGC 1 cut(s) 354
BglII AGATCT 1 cut(s) 1557
BisI GCNGC 5 cut(s) 62, 287, 1422, 1525, 1749
BlsI GCNGC 5 cut(s) 63, 288, 1423, 1526, 1750
Bme1390I CCNGG 3 cut(s) 463, 1534, 1604
BmeT110I CYCGRG 1 cut(s) 1047
BmgT120I GGNCC 2 cut(s) 446, 1254
BmiI GGNNCC 2 cut(s) 313, 1485
BmrFI CCNGG 3 cut(s) 463, 1534, 1604
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 6 cut(s) 564, 870, 900, 948, 1339, 1911
BmtI GCTAGC 1 cut(s) 1713
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 199
BpmI CTGGAG 3 cut(s) 792, 1704, 1915
Bpu10I CCTNAGC 1 cut(s) 2003
Bpu14I TTCGAA 1 cut(s) 474
BpuMI CCSGG 2 cut(s) 463, 1534
Bsa29I ATCGAT 2 cut(s) 403, 1731
BsaBI GATNNNNATC 1 cut(s) 1587
BsaI GGTCTC 1 cut(s) 118
BsaWI WCCGGW 1 cut(s) 670
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 1387, 1682
Bse118I RCCGGY 2 cut(s) 353, 448
Bse1I ACTGG 4 cut(s) 52, 113, 1894, 2103
Bse21I CCTNAGG 1 cut(s) 732
Bse3DI GCAATG 7 cut(s) 250, 357, 421, 705, 1866, 1932, 2019
Bse8I GATNNNNATC 1 cut(s) 1587
BseAI TCCGGA 1 cut(s) 670
BseBI CCWGG 1 cut(s) 1604
BseCI ATCGAT 2 cut(s) 403, 1731
BseGI GGATG 8 cut(s) 198, 592, 633, 731, 885, 1351, 1840, 1969
BseJI GATNNNNATC 1 cut(s) 1587
BseLI CCNNNNNNNGG 3 cut(s) 16, 1387, 1682
BseMI GCAATG 7 cut(s) 250, 357, 421, 705, 1866, 1932, 2019
BseMII CTCAG 8 cut(s) 477, 570, 723, 731, 1130, 1227, 2017, 2153
BseNI ACTGG 4 cut(s) 52, 113, 1894, 2103
BseRI GAGGAG 3 cut(s) 505, 664, 749
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 4 cut(s) 73, 298, 1536, 1735
BseYI CCCAGC 1 cut(s) 385
BsgI GTGCAG 2 cut(s) 1543, 2191
Bsh1236I CGCG 2 cut(s) 139, 371
BshFI GGCC 5 cut(s) 348, 448, 1224, 1256, 2033
BshNI GGYRCC 1 cut(s) 311
BshVI ATCGAT 2 cut(s) 403, 1731
BsiHKAI GWGCWC 4 cut(s) 151, 989, 1056, 1761
BsiHKCI CYCGRG 1 cut(s) 1047
BsiSI CCGG 7 cut(s) 345, 354, 449, 463, 671, 1533, 1714
BslI CCNNNNNNNGG 3 cut(s) 16, 1387, 1682
BsmAI GTCTC 4 cut(s) 118, 173, 1935, 2277
BsmBI CGTCTC 1 cut(s) 173
BsmI GAATGC 2 cut(s) 649, 1006
BsnI GGCC 5 cut(s) 348, 448, 1224, 1256, 2033
Bso31I GGTCTC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 1047
Bsp119I TTCGAA 1 cut(s) 474
Bsp1286I GDGCHC 5 cut(s) 151, 989, 1056, 1677, 1761
Bsp13I TCCGGA 1 cut(s) 670
BspACI CCGC 6 cut(s) 152, 877, 1131, 1421, 2102, 2280
BspANI GGCC 5 cut(s) 348, 448, 1224, 1256, 2033
BspCNI CTCAG 8 cut(s) 478, 571, 724, 730, 1129, 1226, 2016, 2154
BspDI ATCGAT 2 cut(s) 403, 1731
BspEI TCCGGA 1 cut(s) 670
BspFNI CGCG 2 cut(s) 139, 371
BspLI GGNNCC 2 cut(s) 313, 1485
BspMAI CTGCAG 1 cut(s) 1825
BspMI ACCTGC 2 cut(s) 1818, 1862
BspOI GCTAGC 1 cut(s) 1713
BspPI GGATC 2 cut(s) 1571, 1702
BspQI GCTCTTC 1 cut(s) 2121
BspT104I TTCGAA 1 cut(s) 474
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 1133
BsrDI GCAATG 7 cut(s) 250, 357, 421, 705, 1866, 1932, 2019
BsrFI RCCGGY 2 cut(s) 353, 448
BsrI ACTGG 4 cut(s) 52, 113, 1894, 2103
BssAI RCCGGY 2 cut(s) 353, 448
Bst2UI CCWGG 1 cut(s) 1604
Bst4CI ACNGT 3 cut(s) 15, 1128, 1493
Bst6I CTCTTC 3 cut(s) 2055, 2064, 2121
BstAPI GCANNNNNTGC 1 cut(s) 2178
BstBI TTCGAA 1 cut(s) 474
BstDEI CTNAG 9 cut(s) 486, 579, 717, 732, 1116, 1213, 2003, 2042, 2162
BstF5I GGATG 8 cut(s) 198, 592, 633, 731, 885, 1351, 1840, 1969
BstFNI CGCG 2 cut(s) 139, 371
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 3 cut(s) 141, 291, 373
BstMAI GTCTC 4 cut(s) 118, 173, 1935, 2277
BstNI CCWGG 1 cut(s) 1604
BstNSI RCATGY 6 cut(s) 377, 461, 1221, 1602, 1666, 1813
BstSCI CCNGG 3 cut(s) 461, 1532, 1602
BstSFI CTRYAG 2 cut(s) 11, 1821
BstSLI GKGCMC 1 cut(s) 151
BstUI CGCG 2 cut(s) 139, 371
BstV1I GCAGC 4 cut(s) 73, 298, 1536, 1735
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 3 cut(s) 1557, 1576, 1694
BstYI RGATCY 3 cut(s) 1557, 1576, 1694
Bsu15I ATCGAT 2 cut(s) 403, 1731
Bsu36I CCTNAGG 1 cut(s) 732
BsuRI GGCC 5 cut(s) 348, 448, 1224, 1256, 2033
BsuTUI ATCGAT 2 cut(s) 403, 1731
BtgZI GCGATG 1 cut(s) 923
BtsCI GGATG 8 cut(s) 198, 592, 633, 731, 885, 1351, 1840, 1969
BtsIMutI CAGTG 3 cut(s) 106, 2145, 2266
BveI ACCTGC 2 cut(s) 1818, 1862
CfoI GCGC 3 cut(s) 141, 291, 373
Cfr10I RCCGGY 2 cut(s) 353, 448
Cfr13I GGNCC 2 cut(s) 446, 1254
ClaI ATCGAT 2 cut(s) 403, 1731
Csp6I GTAC 7 cut(s) 312, 322, 433, 619, 993, 1324, 2082
CviQI GTAC 7 cut(s) 312, 322, 433, 619, 993, 1324, 2082
DdeI CTNAG 9 cut(s) 486, 579, 717, 732, 1116, 1213, 2003, 2042, 2162
DraI TTTAAA 2 cut(s) 1153, 1704
EaeI YGGCCR 1 cut(s) 1222
Eam1104I CTCTTC 3 cut(s) 2055, 2064, 2121
EarI CTCTTC 3 cut(s) 2055, 2064, 2121
Ecl136II GAGCTC 3 cut(s) 987, 1054, 1759
Eco147I AGGCCT 1 cut(s) 2033
Eco24I GRGCYC 4 cut(s) 989, 1056, 1677, 1761
Eco31I GGTCTC 1 cut(s) 118
Eco32I GATATC 3 cut(s) 1011, 1104, 1317
Eco53kI GAGCTC 3 cut(s) 987, 1054, 1759
Eco57I CTGAAG 1 cut(s) 1026
Eco81I CCTNAGG 1 cut(s) 732
Eco88I CYCGRG 1 cut(s) 1047
EcoICRI GAGCTC 3 cut(s) 987, 1054, 1759
EcoRI GAATTC 1 cut(s) 2008
EcoRII CCWGG 1 cut(s) 1602
EcoRV GATATC 3 cut(s) 1011, 1104, 1317
EcoT22I ATGCAT 3 cut(s) 885, 1405, 1600
EcoT38I GRGCYC 4 cut(s) 989, 1056, 1677, 1761
Esp3I CGTCTC 1 cut(s) 173
FauNDI CATATG 2 cut(s) 302, 1018
FbaI TGATCA 1 cut(s) 333
FblI GTMKAC 2 cut(s) 249, 846
Fnu4HI GCNGC 5 cut(s) 62, 287, 1422, 1525, 1749
FokI GGATG 8 cut(s) 185, 599, 640, 738, 892, 1358, 1847, 1976
FriOI GRGCYC 4 cut(s) 989, 1056, 1677, 1761
Fsp4HI GCNGC 5 cut(s) 62, 287, 1422, 1525, 1749
FspBI CTAG 3 cut(s) 624, 951, 1710
GlaI GCGC 3 cut(s) 140, 290, 372
GluI GCNGC 5 cut(s) 62, 287, 1422, 1525, 1749
GsaI CCCAGC 1 cut(s) 389
GsuI CTGGAG 3 cut(s) 792, 1704, 1915
HaeII RGCGCY 1 cut(s) 292
HaeIII GGCC 5 cut(s) 348, 448, 1224, 1256, 2033
HapII CCGG 7 cut(s) 345, 354, 449, 463, 671, 1533, 1714
HhaI GCGC 3 cut(s) 141, 291, 373
Hin6I GCGC 3 cut(s) 139, 289, 371
HinP1I GCGC 3 cut(s) 139, 289, 371
HincII GTYRAC 1 cut(s) 1261
HindII GTYRAC 1 cut(s) 1261
HinfI GANTC 7 cut(s) 179, 767, 848, 1565, 1717, 1728, 2158
HpaII CCGG 7 cut(s) 345, 354, 449, 463, 671, 1533, 1714
HphI GGTGA 6 cut(s) 182, 202, 842, 1855, 2164, 2243
Hpy166II GTNNAC 8 cut(s) 94, 149, 250, 322, 433, 847, 1261, 1303
Hpy188I TCNGA 7 cut(s) 400, 720, 873, 1119, 1515, 1963, 2163
Hpy188III TCNNGA 9 cut(s) 671, 731, 771, 943, 1049, 1270, 1580, 1785, 2005
Hpy8I GTNNAC 8 cut(s) 94, 149, 250, 322, 433, 847, 1261, 1303
Hpy99I CGWCG 1 cut(s) 826
HpyAV CCTTC 6 cut(s) 460, 577, 625, 1541, 2207, 2211
HpyCH4III ACNGT 3 cut(s) 15, 1128, 1493
HpyCH4IV ACGT 1 cut(s) 45
HpyF3I CTNAG 9 cut(s) 486, 579, 717, 732, 1116, 1213, 2003, 2042, 2162
HpySE526I ACGT 1 cut(s) 45
HspAI GCGC 3 cut(s) 139, 289, 371
Kpn2I TCCGGA 1 cut(s) 670
KpnI GGTACC 1 cut(s) 315
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 333
LguI GCTCTTC 1 cut(s) 2121
LmnI GCTCC 6 cut(s) 69, 225, 238, 936, 1232, 1483
Lsp1109I GCAGC 4 cut(s) 73, 298, 1536, 1735
LweI GCATC 6 cut(s) 564, 870, 900, 948, 1339, 1911
MaeI CTAG 3 cut(s) 624, 951, 1710
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 4 cut(s) 3, 610, 1192, 2122
MbiI CCGCTC 1 cut(s) 1133
MflI RGATCY 3 cut(s) 1557, 1576, 1694
MhlI GDGCHC 5 cut(s) 151, 989, 1056, 1677, 1761
MlsI TGGCCA 1 cut(s) 1224
MluNI TGGCCA 1 cut(s) 1224
MlyI GAGTC 3 cut(s) 173, 842, 1574
MmeI TCCRAC 3 cut(s) 279, 1941, 2190
Mox20I TGGCCA 1 cut(s) 1224
Mph1103I ATGCAT 3 cut(s) 885, 1405, 1600
MroI TCCGGA 1 cut(s) 670
MroNI GCCGGC 1 cut(s) 353
MroXI GAANNNNTTC 1 cut(s) 470
MscI TGGCCA 1 cut(s) 1224
MseI TTAA 3 cut(s) 1152, 1703, 2193
MslI CAYNNNNRTG 4 cut(s) 215, 372, 1431, 2259
Msp20I TGGCCA 1 cut(s) 1224
MspI CCGG 7 cut(s) 345, 354, 449, 463, 671, 1533, 1714
MspR9I CCNGG 3 cut(s) 463, 1534, 1604
Mva1269I GAATGC 2 cut(s) 649, 1006
MvaI CCWGG 1 cut(s) 1604
MvnI CGCG 2 cut(s) 139, 371
NaeI GCCGGC 1 cut(s) 355
NciI CCSGG 2 cut(s) 463, 1534
NdeI CATATG 2 cut(s) 302, 1018
NgoMIV GCCGGC 1 cut(s) 353
NheI GCTAGC 1 cut(s) 1709
NlaIV GGNNCC 2 cut(s) 313, 1485
NmeAIII GCCGAG 2 cut(s) 686, 1765
NmuCI GTSAC 2 cut(s) 3, 1192
NsiI ATGCAT 3 cut(s) 885, 1405, 1600
NspI RCATGY 6 cut(s) 377, 461, 1221, 1602, 1666, 1813
NspV TTCGAA 1 cut(s) 474
PaeI GCATGC 3 cut(s) 461, 1602, 1666
PaeR7I CTCGAG 1 cut(s) 1047
PaqCI CACCTGC 2 cut(s) 1818, 1862
PceI AGGCCT 1 cut(s) 2033
PciI ACATGT 1 cut(s) 1809
PciSI GCTCTTC 1 cut(s) 2121
PcsI WCGNNNNNNNCGW 1 cut(s) 1737
PctI GAATGC 2 cut(s) 649, 1006
PdiI GCCGGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 4 cut(s) 767, 1717, 1728, 2158
PkrI GCNGC 5 cut(s) 63, 288, 1423, 1526, 1750
PleI GAGTC 3 cut(s) 173, 842, 1573
PpsI GAGTC 3 cut(s) 173, 842, 1573
PscI ACATGT 1 cut(s) 1809
Psp124BI GAGCTC 3 cut(s) 989, 1056, 1761
Psp6I CCWGG 1 cut(s) 1602
PspFI CCCAGC 1 cut(s) 385
PspGI CCWGG 1 cut(s) 1602
PspN4I GGNNCC 2 cut(s) 313, 1485
PspPI GGNCC 2 cut(s) 446, 1254
PstI CTGCAG 1 cut(s) 1825
PsuI RGATCY 3 cut(s) 1557, 1576, 1694
RsaI GTAC 7 cut(s) 313, 323, 434, 620, 994, 1325, 2083
RsaNI GTAC 7 cut(s) 312, 322, 433, 619, 993, 1324, 2082
RseI CAYNNNNRTG 4 cut(s) 215, 372, 1431, 2259
SacI GAGCTC 3 cut(s) 989, 1056, 1761
SapI GCTCTTC 1 cut(s) 2121
SaqAI TTAA 3 cut(s) 1152, 1703, 2193
SatI GCNGC 5 cut(s) 62, 287, 1422, 1525, 1749
Sau96I GGNCC 2 cut(s) 446, 1254
SchI GAGTC 3 cut(s) 173, 842, 1574
ScrFI CCNGG 3 cut(s) 463, 1534, 1604
SduI GDGCHC 5 cut(s) 151, 989, 1056, 1677, 1761
SfaNI GCATC 6 cut(s) 564, 870, 900, 948, 1339, 1911
SfcI CTRYAG 2 cut(s) 11, 1821
Sfr274I CTCGAG 1 cut(s) 1047
SfuI TTCGAA 1 cut(s) 474
SlaI CTCGAG 1 cut(s) 1047
SmiMI CAYNNNNRTG 4 cut(s) 215, 372, 1431, 2259
SmlI CTYRAG 1 cut(s) 1047
SmoI CTYRAG 1 cut(s) 1047
SphI GCATGC 3 cut(s) 461, 1602, 1666
SseBI AGGCCT 1 cut(s) 2033
SsiI CCGC 6 cut(s) 152, 877, 1131, 1421, 2102, 2280
SspI AATATT 1 cut(s) 1362
SspMI CTAG 3 cut(s) 624, 951, 1710
SstI GAGCTC 3 cut(s) 989, 1056, 1761
StuI AGGCCT 1 cut(s) 2033
StyD4I CCNGG 3 cut(s) 461, 1532, 1602
TaaI ACNGT 3 cut(s) 15, 1128, 1493
TaiI ACGT 1 cut(s) 48
TaqI TCGA 8 cut(s) 177, 403, 437, 474, 942, 1048, 1365, 1731
TatI WGTACW 2 cut(s) 432, 1323
TauI GCSGC 1 cut(s) 1424
TfiI GAWTC 4 cut(s) 767, 1717, 1728, 2158
Tru1I TTAA 3 cut(s) 1152, 1703, 2193
Tru9I TTAA 3 cut(s) 1152, 1703, 2193
TscAI CASTG 3 cut(s) 113, 2145, 2266
TseFI GTSAC 2 cut(s) 3, 1192
TseI GCWGC 4 cut(s) 61, 286, 1524, 1748
Tsp45I GTSAC 2 cut(s) 3, 1192
TspGWI ACGGA 3 cut(s) 79, 134, 1137
TspRI CASTG 3 cut(s) 113, 2145, 2266
VneI GTGCAC 1 cut(s) 147
XapI RAATTY 3 cut(s) 1475, 1968, 2008
XceI RCATGY 6 cut(s) 377, 461, 1221, 1602, 1666, 1813
XcmI CCANNNNNNNNNTGG 1 cut(s) 2261
XhoI CTCGAG 1 cut(s) 1047
XmiI GTMKAC 2 cut(s) 249, 846
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 3 cut(s) 624, 951, 1710
Zsp2I ATGCAT 3 cut(s) 885, 1405, 1600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.