Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006232

Physical Location & Seq

Genomic Coordinates Reverse (-)

37975202 .. 37975519

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG339300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATGCCTGAGAAGAATGTTGTTACTTGGACTGCTATGGTTACCGGGTACGCTAGGATGAAAGATTTGGAGAATGCAAGAATGTATTTTGATAATATTCCAGAGAAAAATGTGGTGTCATGGAATGCAATGCTCTCGGCTTATGCTCAGAATGGATCTCCAGAGGAGGCTTTGAGATTGTTTGATGGCATGATGGATTCTGGAGATAAACCAAATGAAACTACATGGGCAATTGTCATTTCAGCGTGTTCGTCATGTGGTAATAGTTCCATTGCAGATTTGTTTATCCAAAACTCAACTAGAAGCGGATGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

105

Amino Acids

11.6

Weight (kDa)

4.58

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	36 - 84	2.1e-14	PPR repeat family
PPR_3	PF13812	36 - 83	7.3e-06	Pentatricopeptide repeat domain
PPR	PF01535	39 - 68	6.6e-10	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14470
fragaria_vesca	FvH4_5g27410
malus_domestica	MD08G1249600.v1.1
prunus_persica	Prupe.1G586800_v2.0.a1
pyrus_communis	pycom08g21600
rosa_chinensis	RchiOBHm_Chr7g0218681 RchiOBHm_Chr7g0218851 RchiOBHm_Chr7g0218861
rosa_laevigata	RLG00000002332 RLG00000002335 RLG00000002336
rosa_multiflora	Rmu_co8331561.1_g000001 Rmu_sc0001301.1_g000001 Rmu_sc0001301.1_g000015 Rmu_sc0005784.1_g000011 Rmu_sc0005784.1_g000017
rosa_roxburghii	Rroxscaffold_3G00240390
rosa_rugosa	Rorug07G0179200 Rorug07G0179200
rosa_samantha	Rh7AG320400 Rh7AG322500 Rh7BG313200 Rh7BG313500 Rh7CG337300 Rh7CG339300
rosa_wichuraiana	Rw7G026900 Rw7G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	163
AfaI	GTAC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	46
BccI	CCATC	2 cut(s)	179, 187
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BcnI	CCSGG	1 cut(s)	46
BfaI	CTAG	2 cut(s)	54, 300
Bme1390I	CCNGG	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	299
BpmI	CTGGAG	2 cut(s)	144, 222
BpuMI	CCSGG	1 cut(s)	46
Bse3DI	GCAATG	2 cut(s)	135, 270
BseGI	GGATG	2 cut(s)	63, 314
BseMI	GCAATG	2 cut(s)	135, 270
BseMII	CTCAG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	45
BsmI	GAATGC	2 cut(s)	79, 130
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	135, 270
BssMI	GATC	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	9, 147
BstEII	GGTNACC	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	63, 314
BstKTI	GATC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	155
BstPI	GGTNACC	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	63, 314
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	4 cut(s)	120, 190, 225, 255
CviJI	RGCY	2 cut(s)	140, 170
CviKI_1	RGCY	2 cut(s)	140, 170
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	9, 147
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
Eco91I	GGTNACC	1 cut(s)	40
EcoO65I	GGTNACC	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	314
FaeI	CATG	4 cut(s)	123, 193, 228, 258
FaiI	YATR	6 cut(s)	38, 121, 144, 191, 226, 256
FatI	CATG	4 cut(s)	119, 189, 224, 254
FokI	GGATG	1 cut(s)	70
FspBI	CTAG	2 cut(s)	54, 300
GsuI	CTGGAG	2 cut(s)	144, 222
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	4 cut(s)	123, 193, 228, 258
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	3 cut(s)	101, 161, 201
HpyCH4V	TGCA	4 cut(s)	77, 128, 275, 312
HpyF3I	CTNAG	2 cut(s)	9, 147
Hsp92II	CATG	4 cut(s)	123, 193, 228, 258
Kzo9I	GATC	1 cut(s)	155
LpnPI	CCDG	5 cut(s)	21, 58, 114, 174, 186
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	2 cut(s)	54, 300
MaeIII	GTNAC	2 cut(s)	22, 40
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	1 cut(s)	25
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	2 cut(s)	157, 160
Mph1103I	ATGCAT	1 cut(s)	314
MseI	TTAA	1 cut(s)	316
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	231
Mva1269I	GAATGC	2 cut(s)	79, 130
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	4 cut(s)	123, 193, 228, 258
NmeAIII	GCCGAG	1 cut(s)	116
NsiI	ATGCAT	1 cut(s)	314
PctI	GAATGC	2 cut(s)	79, 130
PfeI	GAWTC	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	316
Sau3AI	GATC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	299
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	1 cut(s)	306
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	2 cut(s)	54, 300
StyD4I	CCNGG	1 cut(s)	44
TasI	AATT	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	74, 231
XspI	CTAG	2 cut(s)	54, 300
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.