RchiOBHm_Chr7g0218861

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006232
Physical Location & Seq
Reverse (-)
37068423 .. 37068671
249 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19592

Sequence Viewer

Length: 249 bp
ATGCTCAAATATTGCGCCCCTTTGGGCAATGTTTGCTCTAATCAAGTTGTTTCACTATATCAACTAATGCAGCGTTGCGAGGACATAAGTCTTGGTACCTTTGTGTACCCAGTTTTGATCAAATCGTCGGGCAGTGCCGGCATTGCGTTCCACGCGCATGTGGTGAAGCTGGGTCTTGGTTCTGATCATTATGTTCGGAATGCCACCTTGAGTGTGTATTTGAAATATGGGCCGGTTGAGCATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

82

Amino Acids

8.93

Weight (kDa)

8.51

Isoelectric Point (pI)

16.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 95
AccII CGCG 1 cut(s) 155
AfaI GTAC 2 cut(s) 97, 107
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 70
Asp718I GGTACC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 17, 157
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 175
BaeI ACNNNNGTAYC 2 cut(s) 87, 120
BanI GGYRCC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 82
BclI TGATCA 2 cut(s) 117, 184
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 104
BoxI GACNNNNGTC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 229
Bse118I RCCGGY 2 cut(s) 137, 232
Bse1I ACTGG 1 cut(s) 110
Bse3DI GCAATG 2 cut(s) 34, 141
BseMI GCAATG 2 cut(s) 34, 141
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 95
BsiSI CCGG 2 cut(s) 138, 233
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 117, 184
BspANI GGCC 1 cut(s) 232
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 95
BsrDI GCAATG 2 cut(s) 34, 141
BsrFI RCCGGY 2 cut(s) 137, 232
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 2 cut(s) 137, 232
BssMI GATC 2 cut(s) 117, 184
BstAPI GCANNNNNTGC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 139, 243
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 2 cut(s) 17, 157
BstKTI GATC 2 cut(s) 120, 187
BstMBI GATC 2 cut(s) 117, 184
BstMWI GCNNNNNNNGC 5 cut(s) 33, 138, 143, 152, 238
BstNSI RCATGY 2 cut(s) 161, 245
BstPAI GACNNNNGTC 1 cut(s) 87
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 139, 243
CfoI GCGC 2 cut(s) 17, 157
Cfr10I RCCGGY 2 cut(s) 137, 232
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 96, 106
CviAII CATG 2 cut(s) 158, 242
CviJI RGCY 2 cut(s) 169, 232
CviKI_1 RGCY 2 cut(s) 169, 232
CviQI GTAC 2 cut(s) 96, 106
DpnI GATC 2 cut(s) 119, 186
DpnII GATC 2 cut(s) 117, 184
FaeI CATG 2 cut(s) 161, 245
FaiI YATR 6 cut(s) 58, 86, 159, 192, 228, 243
FatI CATG 2 cut(s) 157, 241
FbaI TGATCA 2 cut(s) 117, 184
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
GlaI GCGC 2 cut(s) 16, 156
GluI GCNGC 1 cut(s) 71
GsaI CCCAGC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 232
HapII CCGG 2 cut(s) 138, 233
HhaI GCGC 2 cut(s) 17, 157
Hin1II CATG 2 cut(s) 161, 245
Hin6I GCGC 2 cut(s) 15, 155
HinP1I GCGC 2 cut(s) 15, 155
HpaII CCGG 2 cut(s) 138, 233
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 184, 198
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 138, 143, 152, 238
Hsp92II CATG 2 cut(s) 161, 245
HspAI GCGC 2 cut(s) 15, 155
KpnI GGTACC 1 cut(s) 99
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Ksp22I TGATCA 2 cut(s) 117, 184
Kzo9I GATC 2 cut(s) 117, 184
LpnPI CCDG 3 cut(s) 123, 151, 155
Lsp1109I GCAGC 1 cut(s) 82
MalI GATC 2 cut(s) 119, 186
MboI GATC 2 cut(s) 117, 184
MnlI CCTC 1 cut(s) 73
MroNI GCCGGC 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 2 cut(s) 138, 233
Mva1269I GAATGC 1 cut(s) 205
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 5 cut(s) 33, 138, 143, 152, 238
NaeI GCCGGC 1 cut(s) 139
NdeII GATC 2 cut(s) 117, 184
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 2 cut(s) 161, 245
NlaIV GGNNCC 1 cut(s) 97
NspI RCATGY 2 cut(s) 161, 245
PaeI GCATGC 1 cut(s) 245
PctI GAATGC 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 72
PshAI GACNNNNGTC 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 2 cut(s) 97, 107
RsaNI GTAC 2 cut(s) 96, 106
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 2 cut(s) 117, 184
Sau96I GGNCC 1 cut(s) 230
SetI ASST 3 cut(s) 101, 171, 209
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SphI GCATGC 1 cut(s) 245
SspI AATATT 1 cut(s) 11
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 70
TspRI CASTG 1 cut(s) 139
XceI RCATGY 2 cut(s) 161, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.