Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8331561.1

Orthogroup ID

OG0006232

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 954

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8331561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgactgctgctgataaccccaaaccaaatgaagtcactatggtcagtgtcatctcagcatgtgggcatcttggggcattggagataggtaattgggctgtcaactttctcacaaaacatcataccaatctaagtatatcagtatacaattctttgatattcttgtactctaaatgtggaagcatggatgatgccaagagaatattcaacgaaatgaaacaacgagatgtggtttcctacaatacattgatttcagggtttgcagctcatggtcatggaatggaagctgtcaagctaaagatgaagatgaaagaagaatttattgagccaaaccgtgaaacgtatattggtattctgacagcgtgcagccatgctgggttgttagaagaaggttggaagatctttgagtcgatcaaagatcctgatgtagatcattatgcatgcgtggttgacttattaggtcgagtgggtaaagtggatgaggcaaaaaaaatagttgatggcatgcagaaagagccacatgctggagtttatggatctcttttaaatgctagccggattcacaaaaggattgatcttggggagtttgctgcaagcaagctctttgagcttgaaccacataattcaggaaactacattttgctttcgaacatatatgcctctgcaggcagctgggacgatgtggtgagagttagagaagcaatgagaaatgcaggtgtgaaaaaggcaactggttggagttgggtggaatacaatggtaagatgcacaagttcattgcgggagacagatcacacgaactgtcagatgaaatttataggcgattggcagaattacggaggaagctgaggaatgctggctacattgctgataaggcctgtgtgctaagagatgttgatgaggaagagaaagaagagatggtgggtactcatagtgaaaaattggcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

315

Amino Acids

35.29

Weight (kDa)

6.36

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14470
fragaria_vesca	FvH4_5g27410
malus_domestica	MD08G1249600.v1.1
prunus_persica	Prupe.1G586800_v2.0.a1
pyrus_communis	pycom08g21600
rosa_chinensis	RchiOBHm_Chr7g0218681 RchiOBHm_Chr7g0218851 RchiOBHm_Chr7g0218861
rosa_laevigata	RLG00000002332 RLG00000002335 RLG00000002336
rosa_multiflora	Rmu_co8331561.1_g000001 Rmu_sc0001301.1_g000001 Rmu_sc0001301.1_g000015 Rmu_sc0005784.1_g000011 Rmu_sc0005784.1_g000017
rosa_roxburghii	Rroxscaffold_3G00240390
rosa_rugosa	Rorug07G0179200 Rorug07G0179200
rosa_samantha	Rh7AG320400 Rh7AG322500 Rh7BG313200 Rh7BG313500 Rh7CG337300 Rh7CG339300
rosa_wichuraiana	Rw7G026900 Rw7G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	704
Acc36I	ACCTGC	1 cut(s)	704
AccB7I	CCANNNNNTGG	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	1 cut(s)	779
AclWI	GGATC	2 cut(s)	413, 544
AcsI	RAATTY	2 cut(s)	317, 810
AfaI	GTAC	2 cut(s)	167, 925
AfiI	CCNNNNNNNGG	1 cut(s)	524
AgsI	TTSAA	2 cut(s)	208, 614
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 220, 330, 362
AluBI	AGCT	7 cut(s)	266, 287, 295, 601, 610, 672, 844
AluI	AGCT	7 cut(s)	266, 287, 295, 601, 610, 672, 844
Alw26I	GTCTC	1 cut(s)	777
AlwI	GGATC	2 cut(s)	413, 544
AoxI	GGCC	1 cut(s)	873
ApeKI	GCWGC	5 cut(s)	8, 263, 366, 590, 669
ApoI	RAATTY	2 cut(s)	317, 810
AsuHPI	GGTGA	1 cut(s)	697
AsuII	TTCGAA	1 cut(s)	647
AsuNHI	GCTAGC	1 cut(s)	551
BbvCI	CCTCAGC	1 cut(s)	845
BbvI	GCAGC	4 cut(s)	275, 378, 577, 681
BccI	CCATC	2 cut(s)	494, 910
BcoDI	GTCTC	1 cut(s)	777
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	704
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	5 cut(s)	9, 264, 367, 591, 670
BlsI	GCNGC	5 cut(s)	10, 265, 368, 592, 671
BmsI	GCATC	3 cut(s)	76, 181, 753
BmtI	GCTAGC	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	1 cut(s)	845
Bpu14I	TTCGAA	1 cut(s)	647
BsaBI	GATNNNNATC	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	3 cut(s)	708, 774, 861
Bse8I	GATNNNNATC	1 cut(s)	429
BseGI	GGATG	2 cut(s)	193, 484
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMI	GCAATG	3 cut(s)	708, 774, 861
BseMII	CTCAG	2 cut(s)	69, 836
BseNI	ACTGG	1 cut(s)	736
BseXI	GCAGC	4 cut(s)	275, 378, 577, 681
BseYI	CCCAGC	2 cut(s)	374, 672
BsgI	GTGCAG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	875
BsiSI	CCGG	1 cut(s)	556
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmAI	GTCTC	1 cut(s)	777
BsmFI	GGGAC	1 cut(s)	689
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	1 cut(s)	875
Bsp119I	TTCGAA	1 cut(s)	647
Bsp143I	GATC	7 cut(s)	399, 411, 418, 430, 536, 574, 788
BspACI	CCGC	1 cut(s)	779
BspANI	GGCC	1 cut(s)	875
BspCNI	CTCAG	2 cut(s)	68, 837
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	704
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	413, 544
BspT104I	TTCGAA	1 cut(s)	647
BsrDI	GCAATG	3 cut(s)	708, 774, 861
BsrI	ACTGG	1 cut(s)	736
BssMI	GATC	7 cut(s)	399, 411, 418, 430, 536, 574, 788
BssNAI	GTATAC	1 cut(s)	145
Bst1107I	GTATAC	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	335, 801
Bst6I	CTCTTC	2 cut(s)	897, 906
BstBI	TTCGAA	1 cut(s)	647
BstC8I	GCNNGC	8 cut(s)	364, 442, 506, 553, 595, 599, 667, 856
BstDEI	CTNAG	4 cut(s)	55, 131, 845, 884
BstF5I	GGATG	2 cut(s)	193, 484
BstKTI	GATC	7 cut(s)	402, 414, 421, 433, 539, 577, 791
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	7 cut(s)	399, 411, 418, 430, 536, 574, 788
BstMWI	GCNNNNNNNGC	3 cut(s)	514, 607, 872
BstNSI	RCATGY	4 cut(s)	63, 444, 508, 524
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	4 cut(s)	275, 378, 577, 681
BstX2I	RGATCY	3 cut(s)	399, 418, 536
BstYI	RGATCY	3 cut(s)	399, 418, 536
BstZ17I	GTATAC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	875
BtsCI	GGATG	2 cut(s)	193, 484
BtsIMutI	CAGTG	1 cut(s)	52
BveI	ACCTGC	1 cut(s)	704
Cac8I	GCNNGC	8 cut(s)	364, 442, 506, 553, 595, 599, 667, 856
Csp6I	GTAC	2 cut(s)	166, 924
CviAII	CATG	8 cut(s)	60, 184, 269, 275, 371, 441, 505, 521
CviQI	GTAC	2 cut(s)	166, 924
DdeI	CTNAG	4 cut(s)	55, 131, 845, 884
DpnI	GATC	7 cut(s)	401, 413, 420, 432, 538, 576, 790
DpnII	GATC	7 cut(s)	399, 411, 418, 430, 536, 574, 788
DraI	TTTAAA	1 cut(s)	546
Eam1104I	CTCTTC	2 cut(s)	897, 906
EarI	CTCTTC	2 cut(s)	897, 906
Eco147I	AGGCCT	1 cut(s)	875
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	8 cut(s)	63, 187, 272, 278, 374, 444, 508, 524
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	8 cut(s)	59, 183, 268, 274, 370, 440, 504, 520
FauI	CCCGC	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	5 cut(s)	9, 264, 367, 591, 670
FokI	GGATG	2 cut(s)	200, 491
Fsp4HI	GCNGC	5 cut(s)	9, 264, 367, 591, 670
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	5 cut(s)	9, 264, 367, 591, 670
GsaI	CCCAGC	2 cut(s)	378, 676
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	1 cut(s)	875
HapII	CCGG	1 cut(s)	556
Hin1II	CATG	8 cut(s)	63, 187, 272, 278, 374, 444, 508, 524
HincII	GTYRAC	2 cut(s)	103, 451
HindII	GTYRAC	2 cut(s)	103, 451
HinfI	GANTC	2 cut(s)	407, 559
HpaII	CCGG	1 cut(s)	556
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	3 cut(s)	103, 145, 451
Hpy188I	TCNGA	2 cut(s)	357, 805
Hpy188III	TCNNGA	2 cut(s)	422, 627
Hpy8I	GTNNAC	3 cut(s)	103, 145, 451
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	2 cut(s)	335, 801
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	8 cut(s)	263, 366, 440, 508, 593, 665, 713, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	514, 607, 872
HpyF3I	CTNAG	4 cut(s)	55, 131, 845, 884
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	8 cut(s)	63, 187, 272, 278, 374, 444, 508, 524
Kzo9I	GATC	7 cut(s)	399, 411, 418, 430, 536, 574, 788
Lsp1109I	GCAGC	4 cut(s)	275, 378, 577, 681
LweI	GCATC	3 cut(s)	76, 181, 753
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	7 cut(s)	401, 413, 420, 432, 538, 576, 790
MboI	GATC	7 cut(s)	399, 411, 418, 430, 536, 574, 788
MboII	GAAGA	6 cut(s)	316, 326, 398, 409, 914, 923
MflI	RGATCY	3 cut(s)	399, 418, 536
MluCI	AATT	7 cut(s)	91, 148, 317, 622, 810, 830, 938
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	2 cut(s)	374, 716
MnlI	CCTC	5 cut(s)	475, 670, 831, 840, 892
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	672
MspI	CCGG	1 cut(s)	556
Mva1269I	GAATGC	1 cut(s)	856
MwoI	GCNNNNNNNGC	3 cut(s)	514, 607, 872
NdeII	GATC	7 cut(s)	399, 411, 418, 430, 536, 574, 788
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	8 cut(s)	63, 187, 272, 278, 374, 444, 508, 524
NmuCI	GTSAC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	4 cut(s)	63, 444, 508, 524
NspV	TTCGAA	1 cut(s)	647
PaeI	GCATGC	2 cut(s)	444, 508
PaqCI	CACCTGC	1 cut(s)	704
PceI	AGGCCT	1 cut(s)	875
PctI	GAATGC	1 cut(s)	856
PfeI	GAWTC	1 cut(s)	559
PflMI	CCANNNNNTGG	1 cut(s)	524
PkrI	GCNGC	5 cut(s)	10, 265, 368, 592, 671
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PspFI	CCCAGC	2 cut(s)	374, 672
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	3 cut(s)	399, 418, 536
PvuII	CAGCTG	1 cut(s)	672
RsaI	GTAC	2 cut(s)	167, 925
RsaNI	GTAC	2 cut(s)	166, 924
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	5 cut(s)	9, 264, 367, 591, 670
Sau3AI	GATC	7 cut(s)	399, 411, 418, 430, 536, 574, 788
SchI	GAGTC	1 cut(s)	416
SfaNI	GCATC	3 cut(s)	76, 181, 753
SfcI	CTRYAG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	273
SphI	GCATGC	2 cut(s)	444, 508
Sse9I	AATT	7 cut(s)	91, 148, 317, 622, 810, 830, 938
SseBI	AGGCCT	1 cut(s)	875
SsiI	CCGC	1 cut(s)	779
SspI	AATATT	1 cut(s)	204
SspMI	CTAG	1 cut(s)	552
StuI	AGGCCT	1 cut(s)	875
TaaI	ACNGT	2 cut(s)	335, 801
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	3 cut(s)	410, 463, 647
TasI	AATT	7 cut(s)	91, 148, 317, 622, 810, 830, 938
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	5 cut(s)	8, 263, 366, 590, 669
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	6 cut(s)	45, 230, 317, 323, 763, 822
TspGWI	ACGGA	1 cut(s)	850
TspRI	CASTG	1 cut(s)	52
Van91I	CCANNNNNTGG	1 cut(s)	524
XapI	RAATTY	2 cut(s)	317, 810
XceI	RCATGY	4 cut(s)	63, 444, 508, 524
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.