Rmu_sc0001301.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001301.1
OG0006232
Physical Location & Seq
Forward (+)
170 .. 2657
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001301.1_g000001.1.cds

Sequence Viewer

Length: 1167 bp
atgagccacgctcatgctgccgccagtggtaccaaatactgccaacggtgtgacctacagaaacacagccaagcaggctaccacctgagccccggctcaccgctgacgcgccgccacgctctgcgccaaggcagcatcagaggctctacaaactggaaactgatgcatattaatcccacatcgaaaacaaggaagaggtcagtctcttccccacctataaaagctccatgcccacctcattcaaaattccctccaccaccaaaaccaatgggtgtcattgctcatcaaccaatgcgcgcgcctccgtgcaccgccgccttatacccgtctcatcttccactccacgcctcgccccaacatccatgtcgttgcgaggacataagtcttggtacctttgtgtacccagttttgatcaaatcgtcgggcagtgccggcattgcgttccacgcgcatgtggtgaagttgggtcttggttctgatcattatgttcgcaatgccatcatgagtgtgtatttgaaatatgggccggttgagcatgcccgagacatgttcgatgaaatgcctgagaggagtcttgtggattggaacaacatgatttctgggtattggaagtgggggaataaagttgaagcgtgtaaactgtttgatatgatgcctgagaagagtgttgttacttggactgctatggttaccgccttaccggcttatgctcagaatgaatctccagaggtggctttgagattgtttgatggcatgatggattctggagataatccaaatgaaactacatgggcaattgtcatttcagcgtgtttctcagcttatgctcagaatgaatctccagaggaggctttgagattgtttgatggcatgatggattctggagataatccaaatgaaactacatgggcaattgtcatttcagcgtgttcgtcatgtggtaatagttccattgcagatttgtttatccaaaagctcaaccagaagcggatgcatttaagttattttggcaaaacagttgttcttgatatgtatgcaaatcatgggaacgttaagagtgctagagaagtttttgatgaattgggggtgtataagagctctgggacaaggaatgccatgatatcagcaattcagcatatgcaagagttgggaattgacttcagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

388

Amino Acids

42.85

Weight (kDa)

8.45

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 29, 389
AccB1I GGYRCC 2 cut(s) 29, 389
AccII CGCG 4 cut(s) 109, 297, 299, 449
AciI CCGC 7 cut(s) 21, 101, 112, 312, 315, 693, 988
AclI AACGTT 1 cut(s) 1050
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 1144
AfaI GTAC 3 cut(s) 31, 391, 401
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 3 cut(s) 243, 517, 629
AluBI AGCT 5 cut(s) 224, 821, 976, 1098, 1164
AluI AGCT 5 cut(s) 224, 821, 976, 1098, 1164
Alw21I GWGCWC 2 cut(s) 311, 1100
Alw26I GTCTC 3 cut(s) 208, 333, 537
Alw44I GTGCAC 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 540
AoxI GGCC 1 cut(s) 524
ApaLI GTGCAC 1 cut(s) 307
ApeKI GCWGC 2 cut(s) 17, 132
ApoI RAATTY 1 cut(s) 245
AseI ATTAAT 1 cut(s) 171
Asp718I GGTACC 2 cut(s) 29, 389
AspLEI GCGC 6 cut(s) 111, 126, 297, 299, 301, 451
AspS9I GGNCC 1 cut(s) 524
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 90, 469
AvaI CYCGRG 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 311
BaeI ACNNNNGTAYC 2 cut(s) 381, 414
BanI GGYRCC 2 cut(s) 29, 389
BanII GRGCYC 2 cut(s) 92, 1100
Bbv12I GWGCWC 2 cut(s) 311, 1100
BbvI GCAGC 2 cut(s) 4, 144
BccI CCATC 5 cut(s) 506, 743, 751, 860, 868
BclI TGATCA 2 cut(s) 411, 478
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 3 cut(s) 208, 333, 537
BfaI CTAG 2 cut(s) 1062, 1165
BfmI CTRYAG 1 cut(s) 56
BglI GCCNNNNNGGC 2 cut(s) 75, 701
BisI GCNGC 5 cut(s) 18, 21, 112, 133, 315
BlsI GCNGC 5 cut(s) 19, 22, 113, 134, 316
Bme1390I CCNGG 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 524
BmiI GGNNCC 2 cut(s) 31, 391
BmrFI CCNGG 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 398
BmsI GCATC 4 cut(s) 144, 153, 642, 981
BmuI ACTGGG 1 cut(s) 398
BoxI GACNNNNGTC 1 cut(s) 381
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 4 cut(s) 708, 786, 825, 903
Bpu10I CCTNAGC 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 91, 127
Bse118I RCCGGY 3 cut(s) 431, 526, 700
Bse1I ACTGG 3 cut(s) 24, 158, 404
Bse3DI GCAATG 4 cut(s) 276, 435, 499, 951
BseDI CCNNGG 2 cut(s) 91, 127
BseGI GGATG 2 cut(s) 358, 996
BseMI GCAATG 4 cut(s) 276, 435, 499, 951
BseMII CTCAG 6 cut(s) 77, 555, 648, 725, 831, 842
BseNI ACTGG 3 cut(s) 24, 158, 404
BsePI GCGCGC 2 cut(s) 295, 297
BseRI GAGGAG 2 cut(s) 583, 860
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 2 cut(s) 4, 144
Bsh1236I CGCG 4 cut(s) 109, 297, 299, 449
BshFI GGCC 1 cut(s) 526
BshNI GGYRCC 2 cut(s) 29, 389
BsiHKAI GWGCWC 2 cut(s) 311, 1100
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 4 cut(s) 93, 432, 527, 701
BslFI GGGAC 1 cut(s) 1117
BsmAI GTCTC 3 cut(s) 208, 333, 537
BsmBI CGTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 1117
BsmI GAATGC 1 cut(s) 1117
BsnI GGCC 1 cut(s) 526
BsoBI CYCGRG 1 cut(s) 540
Bsp1286I GDGCHC 3 cut(s) 92, 311, 1100
Bsp143I GATC 2 cut(s) 411, 478
BspACI CCGC 7 cut(s) 21, 101, 112, 312, 315, 693, 988
BspANI GGCC 1 cut(s) 526
BspCNI CTCAG 6 cut(s) 78, 556, 649, 724, 830, 841
BspFNI CGCG 4 cut(s) 109, 297, 299, 449
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 31, 391
BspT107I GGYRCC 2 cut(s) 29, 389
BsrDI GCAATG 4 cut(s) 276, 435, 499, 951
BsrFI RCCGGY 3 cut(s) 431, 526, 700
BsrI ACTGG 3 cut(s) 24, 158, 404
BssAI RCCGGY 3 cut(s) 431, 526, 700
BssECI CCNNGG 2 cut(s) 91, 127
BssHII GCGCGC 2 cut(s) 295, 297
BssMI GATC 2 cut(s) 411, 478
BssT1I CCWWGG 1 cut(s) 127
Bst4CI ACNGT 3 cut(s) 48, 642, 1018
Bst6I CTCTTC 3 cut(s) 188, 211, 656
BstC8I GCNNGC 5 cut(s) 76, 297, 299, 433, 537
BstDEI CTNAG 6 cut(s) 86, 564, 657, 711, 817, 828
BstEII GGTNACC 1 cut(s) 688
BstF5I GGATG 2 cut(s) 358, 996
BstFNI CGCG 4 cut(s) 109, 297, 299, 449
BstHHI GCGC 6 cut(s) 111, 126, 297, 299, 301, 451
BstKTI GATC 2 cut(s) 414, 481
BstMAI GTCTC 3 cut(s) 208, 333, 537
BstMBI GATC 2 cut(s) 411, 478
BstMWI GCNNNNNNNGC 9 cut(s) 17, 75, 132, 141, 432, 437, 446, 532, 701
BstNSI RCATGY 3 cut(s) 455, 539, 550
BstPAI GACNNNNGTC 1 cut(s) 381
BstPI GGTNACC 1 cut(s) 688
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 4 cut(s) 109, 297, 299, 449
BstV1I GCAGC 2 cut(s) 4, 144
BsuRI GGCC 1 cut(s) 526
BtsCI GGATG 2 cut(s) 358, 996
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 2 cut(s) 31, 433
Cac8I GCNNGC 5 cut(s) 76, 297, 299, 433, 537
CciI TCATGA 1 cut(s) 501
CfoI GCGC 6 cut(s) 111, 126, 297, 299, 301, 451
Cfr10I RCCGGY 3 cut(s) 431, 526, 700
Cfr13I GGNCC 1 cut(s) 524
CseI GACGC 1 cut(s) 115
Csp6I GTAC 3 cut(s) 30, 390, 400
CviQI GTAC 3 cut(s) 30, 390, 400
DdeI CTNAG 6 cut(s) 86, 564, 657, 711, 817, 828
DpnI GATC 2 cut(s) 413, 480
DpnII GATC 2 cut(s) 411, 478
Eam1104I CTCTTC 3 cut(s) 188, 211, 656
EarI CTCTTC 3 cut(s) 188, 211, 656
Ecl136II GAGCTC 1 cut(s) 1098
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 2 cut(s) 92, 1100
Eco32I GATATC 1 cut(s) 1122
Eco53kI GAGCTC 1 cut(s) 1098
Eco57I CTGAAG 1 cut(s) 1144
Eco88I CYCGRG 1 cut(s) 540
Eco91I GGTNACC 1 cut(s) 688
EcoICRI GAGCTC 1 cut(s) 1098
EcoO65I GGTNACC 1 cut(s) 688
EcoRV GATATC 1 cut(s) 1122
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 2 cut(s) 168, 996
EcoT38I GRGCYC 2 cut(s) 92, 1100
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 333
FaqI GGGAC 1 cut(s) 1117
FauNDI CATATG 1 cut(s) 1137
FbaI TGATCA 2 cut(s) 411, 478
Fnu4HI GCNGC 5 cut(s) 18, 21, 112, 133, 315
FokI GGATG 2 cut(s) 345, 1003
FriOI GRGCYC 2 cut(s) 92, 1100
Fsp4HI GCNGC 5 cut(s) 18, 21, 112, 133, 315
FspBI CTAG 2 cut(s) 1062, 1165
GlaI GCGC 6 cut(s) 110, 125, 296, 298, 300, 450
GluI GCNGC 5 cut(s) 18, 21, 112, 133, 315
GsuI CTGGAG 4 cut(s) 708, 786, 825, 903
HaeIII GGCC 1 cut(s) 526
HapII CCGG 4 cut(s) 93, 432, 527, 701
HgaI GACGC 1 cut(s) 115
HhaI GCGC 6 cut(s) 111, 126, 297, 299, 301, 451
Hin6I GCGC 6 cut(s) 109, 124, 295, 297, 299, 449
HinP1I GCGC 6 cut(s) 109, 124, 295, 297, 299, 449
HinfI GANTC 5 cut(s) 571, 719, 761, 836, 878
HpaII CCGG 4 cut(s) 93, 432, 527, 701
HphI GGTGA 2 cut(s) 90, 469
Hpy166II GTNNAC 3 cut(s) 309, 400, 638
Hpy188I TCNGA 4 cut(s) 140, 478, 714, 831
Hpy188III TCNNGA 6 cut(s) 502, 725, 765, 842, 882, 1025
Hpy8I GTNNAC 3 cut(s) 309, 400, 638
Hpy99I CGWCG 1 cut(s) 424
HpyCH4III ACNGT 3 cut(s) 48, 642, 1018
HpyCH4IV ACGT 1 cut(s) 1050
HpyCH4V TGCA 6 cut(s) 166, 309, 956, 994, 1037, 1141
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 75, 132, 141, 432, 437, 446, 532, 701
HpyF3I CTNAG 6 cut(s) 86, 564, 657, 711, 817, 828
HpySE526I ACGT 1 cut(s) 1050
HspAI GCGC 6 cut(s) 109, 124, 295, 297, 299, 449
KpnI GGTACC 2 cut(s) 33, 393
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Ksp22I TGATCA 2 cut(s) 411, 478
Kzo9I GATC 2 cut(s) 411, 478
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 2 cut(s) 4, 144
LweI GCATC 4 cut(s) 144, 153, 642, 981
MaeI CTAG 2 cut(s) 1062, 1165
MaeII ACGT 1 cut(s) 1050
MaeIII GTNAC 3 cut(s) 50, 670, 688
MalI GATC 2 cut(s) 413, 480
MboI GATC 2 cut(s) 411, 478
MboII GAAGA 4 cut(s) 198, 205, 326, 673
MfeI CAATTG 2 cut(s) 795, 912
MhlI GDGCHC 3 cut(s) 92, 311, 1100
MluCI AATT 6 cut(s) 245, 795, 912, 1079, 1128, 1152
MlyI GAGTC 1 cut(s) 580
Mph1103I ATGCAT 2 cut(s) 168, 996
MroNI GCCGGC 1 cut(s) 431
MseI TTAA 3 cut(s) 171, 998, 1053
MslI CAYNNNNRTG 3 cut(s) 12, 450, 506
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 4 cut(s) 93, 432, 527, 701
MspR9I CCNGG 1 cut(s) 93
MunI CAATTG 2 cut(s) 795, 912
Mva1269I GAATGC 1 cut(s) 1117
MvnI CGCG 4 cut(s) 109, 297, 299, 449
MwoI GCNNNNNNNGC 9 cut(s) 17, 75, 132, 141, 432, 437, 446, 532, 701
NaeI GCCGGC 1 cut(s) 433
NciI CCSGG 1 cut(s) 93
NdeI CATATG 1 cut(s) 1137
NdeII GATC 2 cut(s) 411, 478
NgoMIV GCCGGC 1 cut(s) 431
NlaIV GGNNCC 2 cut(s) 31, 391
NmuCI GTSAC 1 cut(s) 50
NsiI ATGCAT 2 cut(s) 168, 996
NspI RCATGY 3 cut(s) 455, 539, 550
PaeI GCATGC 1 cut(s) 539
PagI TCATGA 1 cut(s) 501
PauI GCGCGC 2 cut(s) 295, 297
PciI ACATGT 1 cut(s) 546
PctI GAATGC 1 cut(s) 1117
PdiI GCCGGC 1 cut(s) 433
PfeI GAWTC 4 cut(s) 719, 761, 836, 878
PkrI GCNGC 5 cut(s) 19, 22, 113, 134, 316
PleI GAGTC 1 cut(s) 579
PpsI GAGTC 1 cut(s) 579
PscI ACATGT 1 cut(s) 546
PshAI GACNNNNGTC 1 cut(s) 381
PshBI ATTAAT 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 1100
Psp1406I AACGTT 1 cut(s) 1050
PspEI GGTNACC 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 31, 391
PspPI GGNCC 1 cut(s) 524
PteI GCGCGC 2 cut(s) 295, 297
RsaI GTAC 3 cut(s) 31, 391, 401
RsaNI GTAC 3 cut(s) 30, 390, 400
RseI CAYNNNNRTG 3 cut(s) 12, 450, 506
SacI GAGCTC 1 cut(s) 1100
SaqAI TTAA 3 cut(s) 171, 998, 1053
SatI GCNGC 5 cut(s) 18, 21, 112, 133, 315
Sau3AI GATC 2 cut(s) 411, 478
Sau96I GGNCC 1 cut(s) 524
SchI GAGTC 1 cut(s) 580
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 3 cut(s) 92, 311, 1100
SfaNI GCATC 4 cut(s) 144, 153, 642, 981
SfcI CTRYAG 1 cut(s) 56
SmiMI CAYNNNNRTG 3 cut(s) 12, 450, 506
SphI GCATGC 1 cut(s) 539
Sse9I AATT 6 cut(s) 245, 795, 912, 1079, 1128, 1152
SsiI CCGC 7 cut(s) 21, 101, 112, 312, 315, 693, 988
SspMI CTAG 2 cut(s) 1062, 1165
SstI GAGCTC 1 cut(s) 1100
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 3 cut(s) 48, 642, 1018
TaiI ACGT 1 cut(s) 1053
TaqI TCGA 2 cut(s) 182, 552
TasI AATT 6 cut(s) 245, 795, 912, 1079, 1128, 1152
TauI GCSGC 3 cut(s) 23, 114, 317
TfiI GAWTC 4 cut(s) 719, 761, 836, 878
Tru1I TTAA 3 cut(s) 171, 998, 1053
Tru9I TTAA 3 cut(s) 171, 998, 1053
TscAI CASTG 2 cut(s) 31, 433
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 2 cut(s) 17, 132
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 6 cut(s) 570, 732, 795, 849, 912, 1092
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 2 cut(s) 31, 433
VneI GTGCAC 1 cut(s) 307
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 1 cut(s) 245
XceI RCATGY 3 cut(s) 455, 539, 550
XspI CTAG 2 cut(s) 1062, 1165
Zsp2I ATGCAT 2 cut(s) 168, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.