RchiOBHm_Chr7g0218851

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006232
Physical Location & Seq
Reverse (-)
37067850 .. 37068361
512 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19591

Sequence Viewer

Length: 432 bp
ATGGTTACCGGGTATGCTAGGATGAAAGATTTGGAGAATGCAAGAAGGTATTTTGATAATATTCCGGAGAAAAATGTGGTGTCGTGGAATGCAATGCTCTCGGCTTATGCTCAGAATGGATCTCCAGAGGAGGCTTTGAGATTGTTTGATGGCATGATGGATTCTGGAGATAAACCAAATGAAACTACATGGGCAATTGCCATTTCAGCGTATTCGTCATGTGGTAATAGTTCCATTGCAGGTTTGTTTATCCAAAAGCTCAACCAGAAGCGGATGCATTTAAGTTATTTTGGCAAAACAGCTGTTCTTGATATGTATGCAAAGCATGGGAGCGTCAAGAGTGCTAGAGAAGTTTTTGATGAATTGGGGGTGTATAAGAGCTCTGGGACAAGGAATGCCATGATATCAGCATATGCAAGAGTTTGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

143

Amino Acids

15.98

Weight (kDa)

8.99

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 24 - 71 5.4e-13 PPR repeat family
PPR PF01535 27 - 56 1.2e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 230
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 1 cut(s) 271
AclWI GGATC 1 cut(s) 127
AluBI AGCT 3 cut(s) 259, 302, 381
AluI AGCT 3 cut(s) 259, 302, 381
Alw21I GWGCWC 1 cut(s) 383
AlwI GGATC 1 cut(s) 127
Aor13HI TCCGGA 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 10
BanII GRGCYC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 383
BccI CCATC 2 cut(s) 143, 151
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BcnI CCSGG 1 cut(s) 10
BfaI CTAG 2 cut(s) 18, 345
BfuAI ACCTGC 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 264
BpmI CTGGAG 2 cut(s) 108, 186
BpuMI CCSGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 64
Bse3DI GCAATG 2 cut(s) 99, 234
BseAI TCCGGA 1 cut(s) 64
BseGI GGATG 2 cut(s) 27, 279
BseMI GCAATG 2 cut(s) 99, 234
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 383
BsiSI CCGG 2 cut(s) 9, 65
BslFI GGGAC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 400
BsmI GAATGC 3 cut(s) 43, 94, 400
Bsp1286I GDGCHC 1 cut(s) 383
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 124
BspEI TCCGGA 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 230
BspPI GGATC 1 cut(s) 127
BsrDI GCAATG 2 cut(s) 99, 234
BssMI GATC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 111
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 2 cut(s) 27, 279
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BtsCI GGATG 2 cut(s) 27, 279
BveI ACCTGC 1 cut(s) 230
CseI GACGC 1 cut(s) 322
CviAII CATG 5 cut(s) 154, 189, 219, 326, 400
CviJI RGCY 5 cut(s) 104, 134, 259, 302, 381
CviKI_1 RGCY 5 cut(s) 104, 134, 259, 302, 381
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 383
Eco32I GATATC 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 381
Eco91I GGTNACC 1 cut(s) 4
EcoICRI GAGCTC 1 cut(s) 381
EcoO65I GGTNACC 1 cut(s) 4
EcoRV GATATC 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 383
FaeI CATG 5 cut(s) 157, 192, 222, 329, 403
FaqI GGGAC 1 cut(s) 400
FatI CATG 5 cut(s) 153, 188, 218, 325, 399
FauNDI CATATG 1 cut(s) 412
FokI GGATG 2 cut(s) 34, 286
FriOI GRGCYC 1 cut(s) 383
FspBI CTAG 2 cut(s) 18, 345
GsuI CTGGAG 2 cut(s) 108, 186
HapII CCGG 2 cut(s) 9, 65
HgaI GACGC 1 cut(s) 322
Hin1II CATG 5 cut(s) 157, 192, 222, 329, 403
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 9, 65
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 5 cut(s) 65, 125, 165, 308, 337
HpyAV CCTTC 1 cut(s) 39
HpyCH4V TGCA 6 cut(s) 41, 92, 239, 277, 320, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 5 cut(s) 157, 192, 222, 329, 403
Kpn2I TCCGGA 1 cut(s) 64
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 7 cut(s) 22, 78, 138, 150, 225, 278, 369
LweI GCATC 1 cut(s) 264
MaeI CTAG 2 cut(s) 18, 345
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 383
MluCI AATT 3 cut(s) 195, 362, 427
MnlI CCTC 2 cut(s) 121, 124
Mph1103I ATGCAT 1 cut(s) 279
MroI TCCGGA 1 cut(s) 64
MseI TTAA 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 2 cut(s) 9, 65
MspR9I CCNGG 1 cut(s) 10
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 3 cut(s) 43, 94, 400
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 10
NdeI CATATG 1 cut(s) 412
NdeII GATC 1 cut(s) 119
NlaIII CATG 5 cut(s) 157, 192, 222, 329, 403
NmeAIII GCCGAG 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 279
PctI GAATGC 3 cut(s) 43, 94, 400
PfeI GAWTC 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 383
PspEI GGTNACC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 281
Sau3AI GATC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 1 cut(s) 383
SetI ASST 5 cut(s) 50, 244, 261, 304, 383
SfaNI GCATC 1 cut(s) 264
Sse9I AATT 3 cut(s) 195, 362, 427
SsiI CCGC 1 cut(s) 271
SspI AATATT 1 cut(s) 61
SspMI CTAG 2 cut(s) 18, 345
SstI GAGCTC 1 cut(s) 383
StyD4I CCNGG 1 cut(s) 8
TasI AATT 3 cut(s) 195, 362, 427
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 38, 195, 375
XspI CTAG 2 cut(s) 18, 345
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.