Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006232

Physical Location & Seq

Genomic Coordinates Forward (+)

14894069 .. 14901913

Gene Structure 7845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0179200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTTAGGGGGAAGACTCAGATGAAGCGGATAGAGAATGCTGCGAGCCGGCAAGTAACCTTCTCGAAGCGAAGGAATGGACTGCTGAAGAAGGCCTTTGAGCTCTCGGTTCTCTGCGATGCTGAAGTTGCACTCATCATTTTCTCCACCAGAGGGAAGCTCTATGAGTTTTCGAGTTGTTCTAGATGCTTCAGTTTGAACAACACAATAGACCGTTTTCAAAAGAGAGTGAAGGATCAAGGCCTCAGCGGTAAAGCAGTTCAAGATCACGATCATATGGAGCTTGCTAATGAAGACACCAGTAGCATGGCAAAGAGGATTGAGTTTATTGAATCTTCTATAAGGAAGCTCTTAGGTGATGGTTTAGAATCATGTTCGATAGACGAGCTACAACAGATAGAAAACCAATTGGAGCGAAGCTTAGCCAAAATTAGAGATAGAAAGAACCTGATGCTGAGGGAGCAGATAGAGCTGATGAAGGAAGAGGAGAAAAGCCTACTCAAGCAAAATGTTGAGCTAAGGGAAAAGTGTGGCATGCAACCAATTGGTCCCCCAAACAATAGAGGAGGAGGAGAAGAAGAAGATGAAGAGGATGATGTAGAAACCGAGAGCGAGACTGAAACTATGGAAGTGGAGACGGAATTGTTCATCGGGCCACCCAAAAGACAAAGAAGTTCCAAGAAAATTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

230

Amino Acids

26.37

Weight (kDa)

5.56

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5.2e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	89 - 177	2.3e-22	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14470
fragaria_vesca	FvH4_5g27410
malus_domestica	MD08G1249600.v1.1
prunus_persica	Prupe.1G586800_v2.0.a1
pyrus_communis	pycom08g21600
rosa_chinensis	RchiOBHm_Chr7g0218681 RchiOBHm_Chr7g0218851 RchiOBHm_Chr7g0218861
rosa_laevigata	RLG00000002332 RLG00000002335 RLG00000002336
rosa_multiflora	Rmu_co8331561.1_g000001 Rmu_sc0001301.1_g000001 Rmu_sc0001301.1_g000015 Rmu_sc0005784.1_g000011 Rmu_sc0005784.1_g000017
rosa_roxburghii	Rroxscaffold_3G00240390
rosa_rugosa	Rorug07G0179200 Rorug07G0179200
rosa_samantha	Rh7AG320400 Rh7AG322500 Rh7BG313200 Rh7BG313500 Rh7CG337300 Rh7CG339300
rosa_wichuraiana	Rw7G026900 Rw7G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	28, 249
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	684
AcuI	CTGAAG	3 cut(s)	107, 144, 175
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	4 cut(s)	199, 221, 263, 332
AluBI	AGCT	8 cut(s)	103, 160, 283, 349, 388, 420, 472, 517
AluI	AGCT	8 cut(s)	103, 160, 283, 349, 388, 420, 472, 517
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	608, 629
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	3 cut(s)	93, 241, 653
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	684
AspS9I	GGNCC	2 cut(s)	548, 653
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	2 cut(s)	20, 300
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	2 cut(s)	245, 455
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	353
BcoDI	GTCTC	2 cut(s)	608, 629
BfaI	CTAG	2 cut(s)	183, 691
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	2 cut(s)	548, 653
BmiI	GGNNCC	1 cut(s)	550
BmsI	GCATC	3 cut(s)	109, 176, 441
BpiI	GAAGAC	2 cut(s)	20, 300
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
Bpu10I	CCTNAGC	3 cut(s)	245, 455, 518
Bpu1102I	GCTNAGC	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	270
BseGI	GGATG	1 cut(s)	598
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	32, 259, 446
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	4 cut(s)	500, 579, 582, 585
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	3 cut(s)	95, 243, 655
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	608, 629
BsmBI	CGTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	95, 243, 655
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	235, 265, 271
Bsp1720I	GCTNAGC	1 cut(s)	421
BspACI	CCGC	2 cut(s)	28, 249
BspANI	GGCC	3 cut(s)	95, 243, 655
BspCNI	CTCAG	3 cut(s)	31, 258, 447
BspLI	GGNNCC	1 cut(s)	550
BspPI	GGATC	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	48
BssMI	GATC	3 cut(s)	235, 265, 271
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	477, 582
BstC8I	GCNNGC	4 cut(s)	46, 50, 285, 536
BstDEI	CTNAG	6 cut(s)	18, 245, 352, 421, 455, 518
BstF5I	GGATG	1 cut(s)	598
BstKTI	GATC	3 cut(s)	238, 268, 274
BstMAI	GTCTC	2 cut(s)	608, 629
BstMBI	GATC	3 cut(s)	235, 265, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 460, 469
BstNSI	RCATGY	1 cut(s)	538
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	2 cut(s)	20, 300
BstXI	CCANNNNNNTGG	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	95, 243, 655
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	598
Cac8I	GCNNGC	4 cut(s)	46, 50, 285, 536
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	548, 653
CviAII	CATG	3 cut(s)	307, 372, 535
DdeI	CTNAG	6 cut(s)	18, 245, 352, 421, 455, 518
DpnI	GATC	3 cut(s)	237, 267, 273
DpnII	GATC	3 cut(s)	235, 265, 271
Eam1104I	CTCTTC	2 cut(s)	477, 582
EarI	CTCTTC	2 cut(s)	477, 582
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	2 cut(s)	95, 243
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	3 cut(s)	107, 144, 175
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	3 cut(s)	310, 375, 538
FaiI	YATR	8 cut(s)	165, 276, 278, 308, 341, 373, 536, 626
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	3 cut(s)	306, 371, 534
FauNDI	CATATG	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	183, 691
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	95, 243, 655
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	3 cut(s)	310, 375, 538
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	3 cut(s)	16, 332, 368
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	4 cut(s)	64, 183, 263, 269
HpyAV	CCTTC	5 cut(s)	66, 70, 85, 226, 472
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	131, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 460, 469
HpyF3I	CTNAG	6 cut(s)	18, 245, 352, 421, 455, 518
Hsp92II	CATG	3 cut(s)	310, 375, 538
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Kzo9I	GATC	3 cut(s)	235, 265, 271
LmnI	GCTCC	3 cut(s)	280, 412, 460
LpnPI	CCDG	4 cut(s)	62, 163, 313, 461
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	3 cut(s)	109, 176, 441
MaeI	CTAG	2 cut(s)	183, 691
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	237, 267, 273
MboI	GATC	3 cut(s)	235, 265, 271
MboII	GAAGA	9 cut(s)	25, 100, 305, 327, 494, 587, 590, 593, 599
MfeI	CAATTG	2 cut(s)	407, 543
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	5 cut(s)	407, 429, 543, 641, 684
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	9 cut(s)	146, 254, 309, 450, 478, 557, 560, 563, 583
MroNI	GCCGGC	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	1 cut(s)	49
MunI	CAATTG	2 cut(s)	407, 543
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	128, 460, 469
NaeI	GCCGGC	1 cut(s)	50
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	3 cut(s)	235, 265, 271
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	3 cut(s)	310, 375, 538
NlaIV	GGNNCC	1 cut(s)	550
NspI	RCATGY	1 cut(s)	538
PaeI	GCATGC	1 cut(s)	538
PceI	AGGCCT	2 cut(s)	95, 243
PctI	GAATGC	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	332, 368
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	2 cut(s)	548, 653
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	235, 265, 271
Sau96I	GGNCC	2 cut(s)	548, 653
SchI	GAGTC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	109, 176, 441
SinI	GGWCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
SphI	GCATGC	1 cut(s)	538
Sse9I	AATT	5 cut(s)	407, 429, 543, 641, 684
SseBI	AGGCCT	2 cut(s)	95, 243
SsiI	CCGC	2 cut(s)	28, 249
SspMI	CTAG	2 cut(s)	183, 691
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	2 cut(s)	95, 243
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	3 cut(s)	65, 173, 377
TasI	AATT	5 cut(s)	407, 429, 543, 641, 684
TfiI	GAWTC	2 cut(s)	332, 368
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	5 cut(s)	38, 306, 491, 600, 637
TspGWI	ACGGA	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	1 cut(s)	684
XbaI	TCTAGA	1 cut(s)	182
XceI	RCATGY	1 cut(s)	538
XspI	CTAG	2 cut(s)	183, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.