pycom08g21600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0006232
Physical Location & Seq
Forward (+)
21050810 .. 21053122
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g21600.1

Sequence Viewer

Length: 2313 bp
ATGTCATTGGCAGAGTTAGAGAGTTTAGCATACAAACTCTGCAATTTGAGCCAGCTCAGGCAGCTTCATGCCCACCTCCTCGTTAAACTTTCCCTCCACCATCACACCCAGTGCCAGTGGGTTTCACTCCTCATCTCCCAATGCACGCGCCTCCGCGCCCCGCCCTCCTATACCCGCCTCATCTTCCACTCCATGCCTCGCCCCAACGTCCACGTCTTCACCTCCATGTTCAAGTACTACTCCAATTCCAATTTCAACTTAGGAGGCTCTGATCAAGTTGCTTCTCTCTATCGACAAATGCAGCAGCGCTCTGACTTAACCATCGGCACCTTCGTCTACCCGGTCTTGATCAAGTCAGCCAGCAGTGCCGGCATTCAGTTCCATGCCCATGTTCGCAAGTTAGGTCTTGCTTCTGATCACTACGTGCGCAATGCCATCCTGGCCTTCTATGCTAAATACGGCCCAGTTGAGCACGCCCGATATCTGTTTGCTGAAATGCATGACTCAACTCTTGCGGACTGGAATAATATGATTTTTGGCTACTGGAAGTGGGGGAATAAAGATGATGCCTGCAAACTCTTCGATATGATGCCCGAAAGGAACGTTGTTACTTGGACTTCCATGGTTACTGGATGTGCTAGGATCAAGGATTTGGACAACGCAAGGAGGTATTTTGATCAAACTCCGCTGAAAAATGTTGTATCCTGGAATGCAATGCTTTCGGCTTATGCTCAGAATGGATGTCCTGAAGAGGCTTTAAGATTGTTTGATGACATGATGAACTCCGGAGATCAACCAAATGAAACTACTTGGGCAATTGTCATTTCATCATGTTCGTCATGCGGTGATTGCTCCCTTGCTGATTCGTTTGTTCAAAAGCTCAACCAAAAGCAGATCCATTTAAGCTATTTTTCCAAGACGGCGTTGCTTGATATGTACGCAAAGCGTGGGAGCCTCCCGACTGCTAGACAAATTTTTGATGAATTGGGGGCGTATAGGAACACCATTACCTGGAATGCCATGATATCAGCATATACAAGGGTCGGGGATTTGGCTTCTGCTAGAGAGCTCTTTGATAAGATGCCACAAAAGGACGTTGTCTCGTGGAACTCGATGATTTCTGGTTATGCTCAAAATGGGCAGTCCGCTCTTGCAATTGATCTCTTTAAAGATATGATTAATGCTGCTGATGGTCTCAAACCAGATGAGGTAACTATGGTGAGTGTCATCTCAGCATGTGGACATCTTGGGGCCTTAGACATCGGTAATTGGGTCATCAGTATTGTCAGGAAACACCATATCAAGCTAAGTGTATCAGGATATAATTCCTTGATATTCTTGTACTCTAAATGTGGAAGCATGGAAGATGCCAAGATGACATTCCAAGAAATGAAAACAAGAGACGTGGTTTCCTACAACACATTGATTGCAGGGTTTGCAGCTCATGGTCATGGGATGGAAGCCATCAAACTACTGTTGAAGATGAAGGGAGAGTTTATTGAACCAGACCGTGTAACATATATTGGTATTCTTACAGCATGTAGCCATGCAGGGTTGTTAGAAGAAGGATGGAAGGTTTTTGAGTCAATCAAAGCTCCTGATGTACATCATTATGCATGTGTGGTTGATTTGTTAGGTCGAGTGGGCAAACTAGATGAAGCGAAAGAAATAATCGATGGCATGCTGAAGGAACCGCATGCTGGAGTTTATGGGTCTCTTTTAAATGCTAGCCGAATCCACAAAAGAATTGATCTTGGGGAGTTTGCTGCAAGCAAGCTATTTGAGCTTGAACCACATAATTCAGGGAATTACATTTTACTTTCAAACATATACGCCTCAGCGGGTAGGTGGGATGATGTTGTGAGAGTTAGAGAATCAATGAGAAAAATAGGCGTGAAGAAAGCAACGGGGTGGAGTTGGGTTGAATACAAAGGCAAGATGCACAAGTTCATTGTGGGAGACAGATCACATGAGCGGTCGGAAGACATTTATAGGCTATTGGCAGAATTAGGGAGGAAAATGAGAAATGCTGGGTACATGGCTGATAAGACCTGTGTGCTAAGAGATGTTGAGGAGGAAGAGAAAGAAGAGATGGTGGGTACCCATAGTGAAAAATTGGCAGTTTGTTTCGCTCTTCTTGTTACTGATGCAGAGGCAGTGATTAGGGTAGTGAAGAATCTGAGGGTGTGCTGGGATTGCCACACAGTTATCAAGATGATATCTAAGTTGGAGGGAAGGAAAATTATTTTGAGGGATAATAACAGGTTCCACTGTTTCAGTGATGGGGTGTGTTCTTGCGGAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

771

Amino Acids

87.01

Weight (kDa)

8.23

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 231 - 279 1.4e-13 PPR repeat family
PPR PF01535 234 - 263 1.2e-09 PPR repeat
PPR_2 PF13041 333 - 365 1.9e-06 PPR repeat family
PPR_1 PF12854 333 - 361 7.9e-06 PPR repeat
PPR PF01535 336 - 365 3.9e-07 PPR repeat
PPR_2 PF13041 364 - 414 2.4e-11 PPR repeat family
PPR PF01535 367 - 393 1.8e-07 PPR repeat
PPR_2 PF13041 467 - 515 3.6e-11 PPR repeat family
E_motif PF20431 580 - 642 1e-22 E motif
DYW_deaminase PF14432 678 - 770 6.8e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 428
Acc65I GGTACC 1 cut(s) 2099
AccB1I GGYRCC 2 cut(s) 326, 2099
AccB7I CCANNNNNTGG 1 cut(s) 1011
AccBSI CCGCTC 2 cut(s) 1148, 1975
AccI GTMKAC 1 cut(s) 336
AccII CGCG 2 cut(s) 148, 156
AccIII TCCGGA 1 cut(s) 785
AclI AACGTT 1 cut(s) 603
AclWI GGATC 2 cut(s) 650, 889
AcsI RAATTY 1 cut(s) 972
AcuI CTGAAG 2 cut(s) 768, 1706
AdeI CACNNNGTG 2 cut(s) 111, 424
AfaI GTAC 6 cut(s) 236, 938, 1343, 1605, 2036, 2101
AfeI AGCGCT 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 1011, 1700
AgsI TTSAA 8 cut(s) 232, 256, 875, 1480, 1502, 1790, 1824, 1925
AjiI CACGTC 2 cut(s) 214, 1405
AjnI CCWGG 3 cut(s) 438, 704, 1010
AjuI GAANNNNNNNTTGG 4 cut(s) 236, 268, 1364, 1396
Alw21I GWGCWC 2 cut(s) 474, 1071
Alw26I GTCTC 5 cut(s) 1105, 1199, 1395, 1719, 1953
AlwI GGATC 2 cut(s) 650, 889
Aor13HI TCCGGA 1 cut(s) 785
Aor51HI AGCGCT 1 cut(s) 308
AoxI GGCC 3 cut(s) 441, 460, 1251
ApeKI GCWGC 6 cut(s) 61, 301, 304, 1184, 1439, 1766
ApoI RAATTY 1 cut(s) 972
AseI ATTAAT 1 cut(s) 1179
Asp718I GGTACC 1 cut(s) 2099
AspLEI GCGC 4 cut(s) 150, 158, 309, 429
AspS9I GGNCC 2 cut(s) 461, 1251
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 3 cut(s) 211, 857, 1231
AsuNHI GCTAGC 1 cut(s) 1727
BanI GGYRCC 2 cut(s) 326, 2099
BanII GRGCYC 1 cut(s) 1071
BauI CACGAG 1 cut(s) 1102
BbsI GAAGAC 2 cut(s) 208, 1989
Bbv12I GWGCWC 2 cut(s) 474, 1071
BbvCI CCTCAGC 1 cut(s) 1837
BbvI GCAGC 6 cut(s) 73, 313, 316, 1171, 1451, 1753
BceAI ACGGC 2 cut(s) 475, 936
BcgI CGANNNNNNTGC 4 cut(s) 562, 596, 702, 736
BciT130I CCWGG 3 cut(s) 440, 706, 1012
BciVI GTATCC 1 cut(s) 712
BclI TGATCA 4 cut(s) 271, 348, 415, 676
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 5 cut(s) 1105, 1199, 1395, 1719, 1953
BfaI CTAG 5 cut(s) 639, 966, 1062, 1652, 1728
BfoI RGCGCY 1 cut(s) 310
BfuI GTATCC 1 cut(s) 712
BglI GCCNNNNNGGC 1 cut(s) 440
BisI GCNGC 6 cut(s) 62, 302, 305, 1185, 1440, 1767
BlsI GCNGC 6 cut(s) 63, 303, 306, 1186, 1441, 1768
BmcAI AGTACT 1 cut(s) 236
Bme1390I CCNGG 4 cut(s) 341, 440, 706, 1012
BmgBI CACGTC 2 cut(s) 214, 1405
BmgT120I GGNCC 2 cut(s) 461, 1251
BmiI GGNNCC 6 cut(s) 328, 953, 1252, 1692, 2101, 2267
BmrFI CCNGG 4 cut(s) 341, 440, 706, 1012
BmrI ACTGGG 2 cut(s) 103, 458
BmsI GCATC 6 cut(s) 556, 579, 1071, 1357, 1929, 2137
BmtI GCTAGC 1 cut(s) 1731
BmuI ACTGGG 2 cut(s) 103, 458
BpiI GAAGAC 2 cut(s) 208, 1989
BpmI CTGGAG 1 cut(s) 1722
Bpu10I CCTNAGC 2 cut(s) 56, 1837
BpuMI CCSGG 1 cut(s) 341
Bsa29I ATCGAT 1 cut(s) 1674
BsaAI YACGTR 1 cut(s) 424
BsaBI GATNNNNATC 1 cut(s) 1605
BsaI GGTCTC 2 cut(s) 1199, 1719
BsaJI CCNNGG 1 cut(s) 621
BsaWI WCCGGW 1 cut(s) 785
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 2 cut(s) 1011, 1700
Bse118I RCCGGY 1 cut(s) 368
Bse1I ACTGG 6 cut(s) 109, 115, 464, 524, 548, 634
Bse3DI GCAATG 2 cut(s) 436, 720
Bse8I GATNNNNATC 1 cut(s) 1605
BseAI TCCGGA 1 cut(s) 785
BseBI CCWGG 3 cut(s) 440, 706, 1012
BseCI ATCGAT 1 cut(s) 1674
BseDI CCNNGG 1 cut(s) 621
BseGI GGATG 6 cut(s) 435, 638, 746, 1461, 1574, 1858
BseJI GATNNNNATC 1 cut(s) 1605
BseLI CCNNNNNNNGG 2 cut(s) 1011, 1700
BseMI GCAATG 2 cut(s) 436, 720
BseMII CTCAG 5 cut(s) 70, 746, 1245, 1851, 2171
BseNI ACTGG 6 cut(s) 109, 115, 464, 524, 548, 634
BseRI GAGGAG 3 cut(s) 68, 119, 2087
BseXI GCAGC 6 cut(s) 73, 313, 316, 1171, 1451, 1753
BseYI CCCAGC 2 cut(s) 2030, 2190
Bsh1236I CGCG 2 cut(s) 148, 156
Bsh1285I CGRYCG 1 cut(s) 1979
BshFI GGCC 3 cut(s) 443, 462, 1253
BshNI GGYRCC 2 cut(s) 326, 2099
BshVI ATCGAT 1 cut(s) 1674
BsiEI CGRYCG 1 cut(s) 1979
BsiHKAI GWGCWC 2 cut(s) 474, 1071
BsiSI CCGG 3 cut(s) 341, 369, 786
BslI CCNNNNNNNGG 2 cut(s) 1011, 1700
BsmAI GTCTC 5 cut(s) 1105, 1199, 1395, 1719, 1953
BsmBI CGTCTC 1 cut(s) 1395
BsmI GAATGC 3 cut(s) 372, 715, 1021
BsnI GGCC 3 cut(s) 443, 462, 1253
Bso31I GGTCTC 2 cut(s) 1199, 1719
Bsp1286I GDGCHC 2 cut(s) 474, 1071
Bsp13I TCCGGA 1 cut(s) 785
Bsp1407I TGTACA 1 cut(s) 1603
Bsp19I CCATGG 1 cut(s) 621
BspANI GGCC 3 cut(s) 443, 462, 1253
BspCNI CTCAG 5 cut(s) 69, 745, 1244, 1850, 2172
BspDI ATCGAT 1 cut(s) 1674
BspEI TCCGGA 1 cut(s) 785
BspFNI CGCG 2 cut(s) 148, 156
BspLI GGNNCC 6 cut(s) 328, 953, 1252, 1692, 2101, 2267
BspOI GCTAGC 1 cut(s) 1731
BspPI GGATC 2 cut(s) 650, 889
BspQI GCTCTTC 1 cut(s) 2139
BspT107I GGYRCC 2 cut(s) 326, 2099
BspTNI GGTCTC 2 cut(s) 1199, 1719
BsrBI CCGCTC 2 cut(s) 1148, 1975
BsrDI GCAATG 2 cut(s) 436, 720
BsrFI RCCGGY 1 cut(s) 368
BsrGI TGTACA 1 cut(s) 1603
BsrI ACTGG 6 cut(s) 109, 115, 464, 524, 548, 634
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 621
BssSI CACGAG 1 cut(s) 1102
BssT1I CCWWGG 1 cut(s) 621
Bst2BI CACGAG 1 cut(s) 1102
Bst2UI CCWGG 3 cut(s) 440, 706, 1012
Bst4CI ACNGT 4 cut(s) 1476, 1511, 2206, 2273
Bst6I CTCTTC 5 cut(s) 584, 744, 2073, 2082, 2139
BstAPI GCANNNNNTGC 1 cut(s) 1436
BstAUI TGTACA 1 cut(s) 1603
BstBAI YACGTR 1 cut(s) 424
BstDSI CCRYGG 1 cut(s) 621
BstF5I GGATG 6 cut(s) 435, 638, 746, 1461, 1574, 1858
BstFNI CGCG 2 cut(s) 148, 156
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 4 cut(s) 150, 158, 309, 429
BstMAI GTCTC 5 cut(s) 1105, 1199, 1395, 1719, 1953
BstMCI CGRYCG 1 cut(s) 1979
BstNI CCWGG 3 cut(s) 440, 706, 1012
BstNSI RCATGY 5 cut(s) 1239, 1542, 1620, 1684, 1700
BstSCI CCNGG 4 cut(s) 339, 438, 704, 1010
BstUI CGCG 2 cut(s) 148, 156
BstV1I GCAGC 6 cut(s) 73, 313, 316, 1171, 1451, 1753
BstV2I GAAGAC 2 cut(s) 208, 1989
BstX2I RGATCY 1 cut(s) 894
BstYI RGATCY 1 cut(s) 894
Bsu15I ATCGAT 1 cut(s) 1674
BsuI GTATCC 1 cut(s) 712
BsuRI GGCC 3 cut(s) 443, 462, 1253
BsuTUI ATCGAT 1 cut(s) 1674
BtgI CCRYGG 1 cut(s) 621
BtrI CACGTC 2 cut(s) 214, 1405
BtsCI GGATG 6 cut(s) 435, 638, 746, 1461, 1574, 1858
BtsI GCAGTG 2 cut(s) 370, 2163
BtsIMutI CAGTG 6 cut(s) 116, 122, 370, 2163, 2269, 2284
CfoI GCGC 4 cut(s) 150, 158, 309, 429
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 2 cut(s) 461, 1251
ClaI ATCGAT 1 cut(s) 1674
Csp6I GTAC 6 cut(s) 235, 937, 1342, 1604, 2035, 2100
CspCI CAANNNNNGTGG 2 cut(s) 1386, 1421
CviQI GTAC 6 cut(s) 235, 937, 1342, 1604, 2035, 2100
DraI TTTAAA 2 cut(s) 1168, 1722
DraIII CACNNNGTG 2 cut(s) 111, 424
Eam1104I CTCTTC 5 cut(s) 584, 744, 2073, 2082, 2139
EarI CTCTTC 5 cut(s) 584, 744, 2073, 2082, 2139
Ecl136II GAGCTC 1 cut(s) 1069
Eco130I CCWWGG 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 1071
Eco31I GGTCTC 2 cut(s) 1199, 1719
Eco32I GATATC 3 cut(s) 482, 1026, 2220
Eco47III AGCGCT 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 1069
Eco57I CTGAAG 2 cut(s) 768, 1706
EcoICRI GAGCTC 1 cut(s) 1069
EcoO109I RGGNCCY 1 cut(s) 1251
EcoRII CCWGG 3 cut(s) 438, 704, 1010
EcoRV GATATC 3 cut(s) 482, 1026, 2220
EcoT14I CCWWGG 1 cut(s) 621
EcoT22I ATGCAT 2 cut(s) 501, 1618
EcoT38I GRGCYC 1 cut(s) 1071
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 1395
FauI CCCGC 3 cut(s) 168, 182, 1834
FbaI TGATCA 4 cut(s) 271, 348, 415, 676
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 6 cut(s) 62, 302, 305, 1185, 1440, 1767
FokI GGATG 6 cut(s) 422, 645, 753, 1468, 1581, 1865
FriOI GRGCYC 1 cut(s) 1071
Fsp4HI GCNGC 6 cut(s) 62, 302, 305, 1185, 1440, 1767
FspBI CTAG 5 cut(s) 639, 966, 1062, 1652, 1728
FspI TGCGCA 1 cut(s) 428
GlaI GCGC 4 cut(s) 149, 157, 308, 428
GluI GCNGC 6 cut(s) 62, 302, 305, 1185, 1440, 1767
GsaI CCCAGC 2 cut(s) 2034, 2194
GsuI CTGGAG 1 cut(s) 1722
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 3 cut(s) 443, 462, 1253
HapII CCGG 3 cut(s) 341, 369, 786
HhaI GCGC 4 cut(s) 150, 158, 309, 429
Hin6I GCGC 4 cut(s) 148, 156, 307, 427
HinP1I GCGC 4 cut(s) 148, 156, 307, 427
HinfI GANTC 6 cut(s) 503, 863, 1583, 1734, 1874, 2176
HpaII CCGG 3 cut(s) 341, 369, 786
HphI GGTGA 3 cut(s) 211, 857, 1231
Hpy166II GTNNAC 3 cut(s) 211, 337, 1241
Hpy188I TCNGA 6 cut(s) 271, 313, 415, 735, 1981, 2181
Hpy188III TCNNGA 8 cut(s) 346, 746, 786, 958, 1288, 1317, 1598, 2212
Hpy8I GTNNAC 3 cut(s) 211, 337, 1241
HpyAV CCTTC 7 cut(s) 340, 454, 1480, 1559, 1567, 1681, 2229
HpyCH4III ACNGT 4 cut(s) 1476, 1511, 2206, 2273
HpyCH4IV ACGT 6 cut(s) 207, 213, 423, 603, 1095, 1404
HpySE526I ACGT 6 cut(s) 207, 213, 423, 603, 1095, 1404
HspAI GCGC 4 cut(s) 148, 156, 307, 427
Kpn2I TCCGGA 1 cut(s) 785
KpnI GGTACC 1 cut(s) 2103
KroI GCCGGC 1 cut(s) 368
KroNI GCCGGC 1 cut(s) 370
Ksp22I TGATCA 4 cut(s) 271, 348, 415, 676
LguI GCTCTTC 1 cut(s) 2139
LmnI GCTCC 3 cut(s) 857, 951, 1600
Lsp1109I GCAGC 6 cut(s) 73, 313, 316, 1171, 1451, 1753
LweI GCATC 6 cut(s) 556, 579, 1071, 1357, 1929, 2137
MaeI CTAG 5 cut(s) 639, 966, 1062, 1652, 1728
MaeII ACGT 6 cut(s) 207, 213, 423, 603, 1095, 1404
MaeIII GTNAC 5 cut(s) 607, 625, 1210, 1513, 2140
MbiI CCGCTC 2 cut(s) 1148, 1975
MfeI CAATTG 2 cut(s) 816, 1155
MflI RGATCY 1 cut(s) 894
MhlI GDGCHC 2 cut(s) 474, 1071
MlyI GAGTC 2 cut(s) 497, 1592
MmeI TCCRAC 2 cut(s) 1959, 2208
Mph1103I ATGCAT 2 cut(s) 501, 1618
MroI TCCGGA 1 cut(s) 785
MroNI GCCGGC 1 cut(s) 368
MseI TTAA 7 cut(s) 84, 317, 758, 902, 1167, 1179, 1721
MslI CAYNNNNRTG 4 cut(s) 224, 387, 1449, 1611
MspA1I CMGCKG 2 cut(s) 688, 1841
MspI CCGG 3 cut(s) 341, 369, 786
MspR9I CCNGG 4 cut(s) 341, 440, 706, 1012
MunI CAATTG 2 cut(s) 816, 1155
Mva1269I GAATGC 3 cut(s) 372, 715, 1021
MvaI CCWGG 3 cut(s) 440, 706, 1012
MvnI CGCG 2 cut(s) 148, 156
NaeI GCCGGC 1 cut(s) 370
NciI CCSGG 1 cut(s) 341
NcoI CCATGG 1 cut(s) 621
NgoMIV GCCGGC 1 cut(s) 368
NheI GCTAGC 1 cut(s) 1727
NlaIV GGNNCC 6 cut(s) 328, 953, 1252, 1692, 2101, 2267
NsbI TGCGCA 1 cut(s) 428
NsiI ATGCAT 2 cut(s) 501, 1618
NspI RCATGY 5 cut(s) 1239, 1542, 1620, 1684, 1700
PaeI GCATGC 2 cut(s) 1684, 1700
PciSI GCTCTTC 1 cut(s) 2139
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 1109
PctI GAATGC 3 cut(s) 372, 715, 1021
PdiI GCCGGC 1 cut(s) 370
PfeI GAWTC 4 cut(s) 863, 1734, 1874, 2176
PflFI GACNNNGTC 1 cut(s) 1097
PflMI CCANNNNNTGG 1 cut(s) 1011
PfoI TCCNGGA 1 cut(s) 704
PkrI GCNGC 6 cut(s) 63, 303, 306, 1186, 1441, 1768
PleI GAGTC 2 cut(s) 497, 1591
PpsI GAGTC 2 cut(s) 497, 1591
Ppu21I YACGTR 1 cut(s) 424
PshBI ATTAAT 1 cut(s) 1179
Psp124BI GAGCTC 1 cut(s) 1071
Psp1406I AACGTT 1 cut(s) 603
Psp6I CCWGG 3 cut(s) 438, 704, 1010
PspFI CCCAGC 2 cut(s) 2030, 2190
PspGI CCWGG 3 cut(s) 438, 704, 1010
PspN4I GGNNCC 6 cut(s) 328, 953, 1252, 1692, 2101, 2267
PspPI GGNCC 2 cut(s) 461, 1251
PsuI RGATCY 1 cut(s) 894
PsyI GACNNNGTC 1 cut(s) 1097
RsaI GTAC 6 cut(s) 236, 938, 1343, 1605, 2036, 2101
RsaNI GTAC 6 cut(s) 235, 937, 1342, 1604, 2035, 2100
RseI CAYNNNNRTG 4 cut(s) 224, 387, 1449, 1611
SacI GAGCTC 1 cut(s) 1071
SapI GCTCTTC 1 cut(s) 2139
SaqAI TTAA 7 cut(s) 84, 317, 758, 902, 1167, 1179, 1721
SatI GCNGC 6 cut(s) 62, 302, 305, 1185, 1440, 1767
Sau96I GGNCC 2 cut(s) 461, 1251
ScaI AGTACT 1 cut(s) 236
SchI GAGTC 2 cut(s) 497, 1592
ScrFI CCNGG 4 cut(s) 341, 440, 706, 1012
SduI GDGCHC 2 cut(s) 474, 1071
SfaNI GCATC 6 cut(s) 556, 579, 1071, 1357, 1929, 2137
SmiMI CAYNNNNRTG 4 cut(s) 224, 387, 1449, 1611
SphI GCATGC 2 cut(s) 1684, 1700
SspMI CTAG 5 cut(s) 639, 966, 1062, 1652, 1728
SstI GAGCTC 1 cut(s) 1071
StyD4I CCNGG 4 cut(s) 339, 438, 704, 1010
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 4 cut(s) 1476, 1511, 2206, 2273
TaiI ACGT 6 cut(s) 210, 216, 426, 606, 1098, 1407
TaqI TCGA 5 cut(s) 292, 582, 1112, 1639, 1674
TatI WGTACW 3 cut(s) 234, 1341, 1603
TfiI GAWTC 4 cut(s) 863, 1734, 1874, 2176
Tru1I TTAA 7 cut(s) 84, 317, 758, 902, 1167, 1179, 1721
Tru9I TTAA 7 cut(s) 84, 317, 758, 902, 1167, 1179, 1721
TscAI CASTG 6 cut(s) 116, 122, 370, 2163, 2276, 2284
TseI GCWGC 6 cut(s) 61, 301, 304, 1184, 1439, 1766
TspDTI ATGAA 9 cut(s) 56, 794, 816, 816, 996, 1406, 1499, 1671, 1939
TspRI CASTG 6 cut(s) 116, 122, 370, 2163, 2276, 2284
Tth111I GACNNNGTC 1 cut(s) 1097
Van91I CCANNNNNTGG 1 cut(s) 1011
VspI ATTAAT 1 cut(s) 1179
XapI RAATTY 1 cut(s) 972
XceI RCATGY 5 cut(s) 1239, 1542, 1620, 1684, 1700
XmiI GTMKAC 1 cut(s) 336
XspI CTAG 5 cut(s) 639, 966, 1062, 1652, 1728
ZrmI AGTACT 1 cut(s) 236
Zsp2I ATGCAT 2 cut(s) 501, 1618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.