Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006232

Physical Location & Seq

Genomic Coordinates Reverse (-)

30312171 .. 30312497

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG313500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATTTCTGGGTATTGGAAGTGGGGGAATAAAGTTGAAGCGTGTAAACTGTTTGATATGATGCCTGAGAAGAGTGTTGTTACTTGGACTGCTATGGTTACCGGGTACGCTAGGATGAAGGATTTGGAGAATGCAAGAGGGTATTTTGATAACATTCCGGAGAAAAATGTGGTGTCGTGGAATGCAATGCTCTTGGCTTATGCTCAGAATGGCTCTCCAGAGGAGGCTTTGAGATTGTTTGATGGCATGATGGATTCTGGAGATAAACCAAATGAAACTACTTGGGCAATTGTCATTTCAGCGTGTTCGTCATGTGGTAATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

108

Amino Acids

12.07

Weight (kDa)

4.82

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	55 - 103	1.7e-13	PPR repeat family
PPR	PF01535	58 - 87	1.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14470
fragaria_vesca	FvH4_5g27410
malus_domestica	MD08G1249600.v1.1
prunus_persica	Prupe.1G586800_v2.0.a1
pyrus_communis	pycom08g21600
rosa_chinensis	RchiOBHm_Chr7g0218681 RchiOBHm_Chr7g0218851 RchiOBHm_Chr7g0218861
rosa_laevigata	RLG00000002332 RLG00000002335 RLG00000002336
rosa_multiflora	Rmu_co8331561.1_g000001 Rmu_sc0001301.1_g000001 Rmu_sc0001301.1_g000015 Rmu_sc0005784.1_g000011 Rmu_sc0005784.1_g000017
rosa_roxburghii	Rroxscaffold_3G00240390
rosa_rugosa	Rorug07G0179200 Rorug07G0179200
rosa_samantha	Rh7AG320400 Rh7AG322500 Rh7BG313200 Rh7BG313500 Rh7CG337300 Rh7CG339300
rosa_wichuraiana	Rw7G026900 Rw7G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	157
AfaI	GTAC	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	103
BccI	CCATC	2 cut(s)	236, 244
BcnI	CCSGG	1 cut(s)	103
BfaI	CTAG	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	51
BpmI	CTGGAG	2 cut(s)	201, 279
BpuMI	CCSGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	192
BseAI	TCCGGA	1 cut(s)	157
BseGI	GGATG	1 cut(s)	120
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	57, 218
BseRI	GAGGAG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	102, 158
BsmI	GAATGC	2 cut(s)	136, 187
Bsp13I	TCCGGA	1 cut(s)	157
BspCNI	CTCAG	2 cut(s)	58, 217
BspEI	TCCGGA	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	66, 204
BstEII	GGTNACC	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	120
BstPI	GGTNACC	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	2 cut(s)	247, 312
CviJI	RGCY	3 cut(s)	197, 213, 227
CviKI_1	RGCY	3 cut(s)	197, 213, 227
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	66, 204
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	97
FaeI	CATG	2 cut(s)	250, 315
FaiI	YATR	5 cut(s)	59, 95, 201, 248, 313
FatI	CATG	2 cut(s)	246, 311
FokI	GGATG	1 cut(s)	127
FspBI	CTAG	1 cut(s)	111
GsuI	CTGGAG	2 cut(s)	201, 279
HapII	CCGG	2 cut(s)	102, 158
Hin1II	CATG	2 cut(s)	250, 315
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	102, 158
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	3 cut(s)	158, 218, 258
Hpy8I	GTNNAC	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	134, 185
HpyF3I	CTNAG	2 cut(s)	66, 204
Hsp92II	CATG	2 cut(s)	250, 315
Kpn2I	TCCGGA	1 cut(s)	157
LpnPI	CCDG	5 cut(s)	78, 115, 171, 231, 243
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	79, 97
MboII	GAAGA	1 cut(s)	82
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	1 cut(s)	288
MnlI	CCTC	3 cut(s)	131, 214, 217
MroI	TCCGGA	1 cut(s)	157
MspI	CCGG	2 cut(s)	102, 158
MspR9I	CCNGG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	2 cut(s)	136, 187
NciI	CCSGG	1 cut(s)	103
NlaIII	CATG	2 cut(s)	250, 315
PctI	GAATGC	2 cut(s)	136, 187
PfeI	GAWTC	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	97
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	103
SfaNI	GCATC	1 cut(s)	51
Sse9I	AATT	1 cut(s)	288
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	51
TasI	AATT	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	131, 288
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.