Rmu_sc0005784.1_g000011

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005784.1
OG0006232
Physical Location & Seq
Forward (+)
48185 .. 49030
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005784.1_g000011.1.cds

Sequence Viewer

Length: 846 bp
atgcagcgttgcgaggacgtatgtcttggtacctttctgtacccaattttgatcaaatcgtccggcagtgctggcattgcgttccacgcgcatgtagtgaagttgggacttggttctgatcgttatattcacaatgccatcataagcgtgtatttgaaatatgggccggttgagcatgcccgagacgtgttcgatgaaatgcctgagaggagtcttgtggattggaacaacatgatttctgggtattggaagtgggagaataaagttgaagcgtgtaaactgtttgttatgatgcctgagaagagtgttgttacttggactgctatggttactgggtacgctaggatgaaggatttggagaatgcaagaaggaattttgataatattccggagaaaaatgtggtgtcgtggaatgcaatgctctcagcttatgctcagaatggatctccagaggaggctttgagattgtttgatggcacgatggattctggagataaaccaaatgaaactacatgggcaattgtcatttcagcatgttcgtcatgtggtaatagttccattgcaaattcgtttatccaaaagctccaccagaagcggatgcatttaagttattttggcaaaacagctatgctggatatgtatgcaaaccgcgggagcaacaagagtgctagagaagtttttgatgaattgggggtgtataagagctctgggacatggaatgccatgatatcagcatatgcaagagtcgggaatttgacttcagctagagagctctttgataagatgccggaaagagatgttgtctcatggaactcgatgatttctggttatgctcagaacagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

281

Amino Acids

31.69

Weight (kDa)

7.64

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 29
AccII CGCG 2 cut(s) 89, 651
AccIII TCCGGA 1 cut(s) 388
AciI CCGC 3 cut(s) 595, 649, 651
AclWI GGATC 1 cut(s) 451
AcsI RAATTY 3 cut(s) 373, 565, 751
AcuI CTGAAG 1 cut(s) 744
AfaI GTAC 3 cut(s) 31, 41, 338
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 2 cut(s) 157, 269
AjiI CACGTC 1 cut(s) 187
AluBI AGCT 6 cut(s) 428, 583, 626, 705, 764, 772
AluI AGCT 6 cut(s) 428, 583, 626, 705, 764, 772
Alw21I GWGCWC 2 cut(s) 707, 774
Alw26I GTCTC 2 cut(s) 177, 808
AlwI GGATC 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 180
Aor13HI TCCGGA 1 cut(s) 388
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 3 cut(s) 373, 565, 751
Asp718I GGTACC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 180
BanI GGYRCC 1 cut(s) 29
BanII GRGCYC 2 cut(s) 707, 774
Bbv12I GWGCWC 2 cut(s) 707, 774
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 146, 467, 475
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 177, 808
BfaI CTAG 3 cut(s) 342, 669, 765
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 180
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 3 cut(s) 282, 588, 774
BmuI ACTGGG 1 cut(s) 342
BoxI GACNNNNGTC 1 cut(s) 21
BpmI CTGGAG 2 cut(s) 432, 510
BsaJI CCNNGG 1 cut(s) 649
BsaWI WCCGGW 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 3 cut(s) 75, 423, 558
BseAI TCCGGA 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 2 cut(s) 351, 603
BseMI GCAATG 3 cut(s) 75, 423, 558
BseMII CTCAG 4 cut(s) 195, 288, 438, 449
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 2 cut(s) 223, 467
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 2 cut(s) 89, 651
BshFI GGCC 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 707, 774
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 4 cut(s) 63, 167, 389, 788
BslFI GGGAC 2 cut(s) 120, 724
BsmAI GTCTC 2 cut(s) 177, 808
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 2 cut(s) 120, 724
BsmI GAATGC 3 cut(s) 367, 418, 724
BsnI GGCC 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 707, 774
Bsp13I TCCGGA 1 cut(s) 388
Bsp143I GATC 3 cut(s) 51, 118, 443
BspACI CCGC 3 cut(s) 595, 649, 651
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 4 cut(s) 196, 289, 437, 448
BspEI TCCGGA 1 cut(s) 388
BspFNI CGCG 2 cut(s) 89, 651
BspLI GGNNCC 1 cut(s) 31
BspPI GGATC 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 29
BsrDI GCAATG 3 cut(s) 75, 423, 558
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 3 cut(s) 51, 118, 443
Bst4CI ACNGT 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 73, 177
BstDEI CTNAG 5 cut(s) 204, 297, 424, 435, 834
BstDSI CCRYGG 1 cut(s) 649
BstF5I GGATG 2 cut(s) 351, 603
BstFNI CGCG 2 cut(s) 89, 651
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 3 cut(s) 54, 121, 446
BstMAI GTCTC 2 cut(s) 177, 808
BstMBI GATC 3 cut(s) 51, 118, 443
BstMWI GCNNNNNNNGC 4 cut(s) 72, 77, 86, 172
BstNSI RCATGY 3 cut(s) 95, 179, 537
BstPAI GACNNNNGTC 1 cut(s) 21
BstUI CGCG 2 cut(s) 89, 651
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BsuRI GGCC 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 649
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 351, 603
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 73, 177
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 164
Cfr42I CCGCGG 1 cut(s) 652
Csp6I GTAC 3 cut(s) 30, 40, 337
CviAII CATG 9 cut(s) 92, 176, 232, 513, 534, 543, 714, 724, 807
CviJI RGCY 8 cut(s) 166, 428, 458, 583, 626, 705, 764, 772
CviKI_1 RGCY 8 cut(s) 166, 428, 458, 583, 626, 705, 764, 772
CviQI GTAC 3 cut(s) 30, 40, 337
DdeI CTNAG 5 cut(s) 204, 297, 424, 435, 834
DpnI GATC 3 cut(s) 53, 120, 445
DpnII GATC 3 cut(s) 51, 118, 443
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Ecl136II GAGCTC 2 cut(s) 705, 772
Eco24I GRGCYC 2 cut(s) 707, 774
Eco32I GATATC 1 cut(s) 729
Eco53kI GAGCTC 2 cut(s) 705, 772
Eco57I CTGAAG 1 cut(s) 744
Eco88I CYCGRG 1 cut(s) 180
EcoICRI GAGCTC 2 cut(s) 705, 772
EcoRV GATATC 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 603
EcoT38I GRGCYC 2 cut(s) 707, 774
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 9 cut(s) 95, 179, 235, 516, 537, 546, 717, 727, 810
FaqI GGGAC 2 cut(s) 120, 724
FatI CATG 9 cut(s) 91, 175, 231, 512, 533, 542, 713, 723, 806
FauI CCCGC 1 cut(s) 644
FauNDI CATATG 1 cut(s) 736
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 358, 610
FriOI GRGCYC 2 cut(s) 707, 774
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 3 cut(s) 342, 669, 765
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 2 cut(s) 432, 510
HaeIII GGCC 1 cut(s) 166
HapII CCGG 4 cut(s) 63, 167, 389, 788
HhaI GCGC 1 cut(s) 91
Hin1II CATG 9 cut(s) 95, 179, 235, 516, 537, 546, 717, 727, 810
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 3 cut(s) 211, 485, 744
HpaII CCGG 4 cut(s) 63, 167, 389, 788
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 3 cut(s) 118, 438, 837
Hpy188III TCNNGA 4 cut(s) 389, 449, 489, 748
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 343, 363
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 2 cut(s) 18, 186
HpyCH4V TGCA 7 cut(s) 4, 365, 416, 563, 601, 644, 740
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 77, 86, 172
HpyF3I CTNAG 5 cut(s) 204, 297, 424, 435, 834
HpySE526I ACGT 2 cut(s) 18, 186
Hsp92II CATG 9 cut(s) 95, 179, 235, 516, 537, 546, 717, 727, 810
HspAI GCGC 1 cut(s) 89
Kpn2I TCCGGA 1 cut(s) 388
KpnI GGTACC 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 51
KspI CCGCGG 1 cut(s) 652
Kzo9I GATC 3 cut(s) 51, 118, 443
LmnI GCTCC 2 cut(s) 588, 654
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 3 cut(s) 282, 588, 774
MaeI CTAG 3 cut(s) 342, 669, 765
MaeII ACGT 2 cut(s) 18, 186
MaeIII GTNAC 2 cut(s) 310, 328
MalI GATC 3 cut(s) 53, 120, 445
MboI GATC 3 cut(s) 51, 118, 443
MboII GAAGA 1 cut(s) 313
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 2 cut(s) 707, 774
MluCI AATT 6 cut(s) 45, 373, 519, 565, 686, 751
MlyI GAGTC 2 cut(s) 220, 753
MnlI CCTC 4 cut(s) 7, 201, 445, 448
Mph1103I ATGCAT 1 cut(s) 603
MroI TCCGGA 1 cut(s) 388
MseI TTAA 1 cut(s) 605
MslI CAYNNNNRTG 2 cut(s) 90, 146
MspA1I CMGCKG 1 cut(s) 651
MspI CCGG 4 cut(s) 63, 167, 389, 788
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 3 cut(s) 367, 418, 724
MvnI CGCG 2 cut(s) 89, 651
MwoI GCNNNNNNNGC 4 cut(s) 72, 77, 86, 172
NdeI CATATG 1 cut(s) 736
NdeII GATC 3 cut(s) 51, 118, 443
NlaIII CATG 9 cut(s) 95, 179, 235, 516, 537, 546, 717, 727, 810
NlaIV GGNNCC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 603
NspI RCATGY 3 cut(s) 95, 179, 537
PaeI GCATGC 1 cut(s) 179
PctI GAATGC 3 cut(s) 367, 418, 724
PfeI GAWTC 1 cut(s) 485
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 2 cut(s) 219, 752
PpsI GAGTC 2 cut(s) 219, 752
PshAI GACNNNNGTC 1 cut(s) 21
Psp124BI GAGCTC 2 cut(s) 707, 774
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 443
RsaI GTAC 3 cut(s) 31, 41, 338
RsaNI GTAC 3 cut(s) 30, 40, 337
RseI CAYNNNNRTG 2 cut(s) 90, 146
SacI GAGCTC 2 cut(s) 707, 774
SacII CCGCGG 1 cut(s) 652
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 3 cut(s) 51, 118, 443
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 2 cut(s) 220, 753
SduI GDGCHC 2 cut(s) 707, 774
SetI ASST 9 cut(s) 21, 35, 189, 430, 585, 628, 707, 766, 774
SfaNI GCATC 3 cut(s) 282, 588, 774
Sfr303I CCGCGG 1 cut(s) 652
SgrBI CCGCGG 1 cut(s) 652
SmiMI CAYNNNNRTG 2 cut(s) 90, 146
SphI GCATGC 1 cut(s) 179
Sse9I AATT 6 cut(s) 45, 373, 519, 565, 686, 751
SsiI CCGC 3 cut(s) 595, 649, 651
SspI AATATT 1 cut(s) 385
SspMI CTAG 3 cut(s) 342, 669, 765
SstI GAGCTC 2 cut(s) 707, 774
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 2 cut(s) 21, 189
TaqI TCGA 2 cut(s) 192, 815
TasI AATT 6 cut(s) 45, 373, 519, 565, 686, 751
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 1 cut(s) 73
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 210, 362, 519, 699
TspRI CASTG 1 cut(s) 73
XapI RAATTY 3 cut(s) 373, 565, 751
XceI RCATGY 3 cut(s) 95, 179, 537
XspI CTAG 3 cut(s) 342, 669, 765
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.