Rroxscaffold_3G00240390

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006232
Physical Location & Seq
Reverse (-)
32065579 .. 32068037
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240390.1

Sequence Viewer

Length: 1920 bp
ATGCCCACCTCATTCAAAATTCCCTCCACCACCAAAACCAGGTGGGTGTCATTGCTCATCAACCAATGCACGCGCCTCCGTGCACCGCCGCCCTATACCCCGTTGCGAGGACATAAGTCTTGGTACCTTTGTGTACCCGTTTTGATCAAATCGTCGGGCAGTGCCGGCATTGCGTTCCACGCGCATGTGGTGAAGTTGGGTCTTGGTTCTGATCATTATGTTCGCAATGCCATCATGAGCGTGTATTCGAAATATGGGCCGGTTGAGCATGCCCGAGACGTGTTCGATGAAATGCCTGAGAGGAGTCTGGTGGATTGGAATAACATGATTTCTGGGTATTGGAAGTGGGGGAATAAAGTTGAAGCGTGTAAACTGTTTGACGTGATGCCTGAGAAGAGTGTTGTTACTTGGACTGCTATGGTTACCGGGTACGCTAGGATGAAGGATTTGGAGAATGCAAGAAGGTATTTTGATAATATTCTGGAGAAAAATGTGGTGTCGTGGAATGCAATGCTCTCGGCTTATGCTCAGAATGGATCTCCAGAGGAGGCTTTGAGATTGTTTGATGGCATGATGGATTCTGGAGATAAACCAAATGAAACTACATGGGCAATTGTCATTTCAGCGTGTTCGTCATGTGGTAATAGTTCCATTGCAGATTTGTTTATCCAAAAACTCAACCAGAAGCGGATGCATTTAAGTTATTTTGGCAAAACTGCGATGCTTGATATGTATGCAAAGCGTGGGAGCATCAAGAGTGCTAGAGAAGTTTTTGATGAATCGGGGGTGTATAAGAGCTCTGGGACATGGAATGCCATGATATCAGCATATGCAAGAGTTGGGAATTTGACTTCAGCTAGAGAGCTCTTTGATAAGATGCCGGAAAGAGATGTTGTCTCATGGAACTCGATGATTTCTGGTTATGCTCAGAACGGACAGTCTGCTCTTGCAATTGATCTCTTTAAAGACATGACTGCTTCTGATAACCCCAAACCAAATGAAGTCACTATGGTCAGTGTCATCTCAGCATGTGGGCATCTTGGGGCATTGGAAATAGGTAATTGGGCCGTTAACTTTCTCACAAAACATTATACCAATCTAAGTACATCAGTAGACAATTCTTTGATATTCTTGTACTCTAAATGTGGAAGCATGGATGATGCCAAGAGAATATTCAACGAAATGAAAAAACGAGATGTGGTTTCCTACAATACATTGATTTCAGGGTTTGCGGCTCATGGTCATGGAATGGAAGCTGTCAAGCTAATGATGAAGATGAAAGAAGAACTTATTGAGCCAAACCGTGAAACGTATATTGGTATTCTGACAGCGTGCAGCCATGCTGGGTTGTTAGAAGAAGGTTGGAAGATCTTTGAGTCGATCAAAGATCCTGATGTAGATCATTATGCATGCGTGGTTGACTTATTAGGTCGAGTGGGTAAAGTGGATGAGGCAAAAAAAATAGTTGATGGCATGCTGAAAGAGCCACATGCTGGAGTTTATGGATCTCTTTTAAATGCTAGCCGGATTCACAAAAGAATTGATATTGGGGAGTTTGCTGCAAGCAAGCTCTTTGAGCTTGAACCACATAATTCAGGAAACTACATTTTGCTTTCGAACATATATGCCTCTGCAGGCAGGTGGGACGATGTGGTGAGAGTTAGAGAAGCAATGAGAAATGCAGGTGTGAAAAAGGCAACTGGTTGGAGTTGGGTGGAATACAATGGTAAGATGCACAAGTTCATTGCGGGAGACAGATCACACGAACTGTCAGATGAAATTTATAGGCGATTGGCAGAATTAGGGAGGAAGCTGAGGAATGCTGGCTACATTGCTGATAAGGCCTGTGTGCTAAGAGATGTTGATGAGGAAGAGAAAGAAGAGATGGTGGGTACTCATAGTGAAAAATTGGCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

639

Amino Acids

71.61

Weight (kDa)

7.91

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 163 - 211 4.6e-13 PPR repeat family
PPR PF01535 166 - 195 9.5e-09 PPR repeat
PPR PF01535 269 - 297 6.7e-08 PPR repeat
PPR_2 PF13041 296 - 345 7.1e-11 PPR repeat family
PPR PF01535 299 - 325 2.4e-07 PPR repeat
PPR_2 PF13041 398 - 446 3.3e-12 PPR repeat family
PPR_1 PF12854 398 - 427 9e-06 PPR repeat
PPR_3 PF13812 398 - 445 1.5e-07 Pentatricopeptide repeat domain
PPR PF01535 401 - 429 4.8e-06 PPR repeat
E_motif PF20431 511 - 573 3.4e-23 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1629, 1673
Acc36I ACCTGC 2 cut(s) 1629, 1673
Acc65I GGTACC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 123
AccB7I CCANNNNNTGG 1 cut(s) 1493
AccI GTMKAC 1 cut(s) 1113
AccII CGCG 2 cut(s) 73, 182
AciI CCGC 5 cut(s) 86, 89, 688, 1232, 1748
AclWI GGATC 3 cut(s) 544, 1382, 1513
AcsI RAATTY 3 cut(s) 18, 844, 1779
AcuI CTGAAG 1 cut(s) 837
AfaI GTAC 6 cut(s) 125, 135, 431, 1105, 1136, 1894
AfiI CCNNNNNNNGG 3 cut(s) 39, 107, 1493
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 4 cut(s) 16, 362, 1177, 1583
AjiI CACGTC 2 cut(s) 280, 382
AjnI CCWGG 1 cut(s) 38
AjuI GAANNNNNNNTTGG 4 cut(s) 1157, 1189, 1299, 1331
AluBI AGCT 8 cut(s) 798, 857, 865, 1256, 1264, 1570, 1579, 1813
AluI AGCT 8 cut(s) 798, 857, 865, 1256, 1264, 1570, 1579, 1813
Alw21I GWGCWC 3 cut(s) 85, 800, 867
Alw26I GTCTC 3 cut(s) 270, 901, 1746
Alw44I GTGCAC 1 cut(s) 81
AlwI GGATC 3 cut(s) 544, 1382, 1513
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 3 cut(s) 257, 1065, 1842
ApaLI GTGCAC 1 cut(s) 81
ApeKI GCWGC 2 cut(s) 1335, 1559
ApoI RAATTY 3 cut(s) 18, 844, 1779
Asp718I GGTACC 1 cut(s) 123
AspLEI GCGC 2 cut(s) 75, 184
AspS9I GGNCC 2 cut(s) 257, 1065
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 202, 1666
AsuII TTCGAA 2 cut(s) 248, 1616
AsuNHI GCTAGC 1 cut(s) 1520
AvaI CYCGRG 1 cut(s) 273
BaeGI GKGCMC 1 cut(s) 85
BaeI ACNNNNGTAYC 2 cut(s) 115, 148
BanI GGYRCC 1 cut(s) 123
BanII GRGCYC 2 cut(s) 800, 867
Bbv12I GWGCWC 3 cut(s) 85, 800, 867
BbvCI CCTCAGC 1 cut(s) 1814
BbvI GCAGC 2 cut(s) 1347, 1546
BccI CCATC 5 cut(s) 239, 560, 568, 1463, 1879
BceAI ACGGC 1 cut(s) 1052
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 2 cut(s) 144, 211
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 3 cut(s) 270, 901, 1746
BfaI CTAG 4 cut(s) 435, 762, 858, 1521
BfmI CTRYAG 1 cut(s) 1632
BfuAI ACCTGC 2 cut(s) 1629, 1673
BglII AGATCT 1 cut(s) 1368
BisI GCNGC 4 cut(s) 89, 1233, 1336, 1560
BlsI GCNGC 4 cut(s) 90, 1234, 1337, 1561
Bme1390I CCNGG 2 cut(s) 40, 427
BmeT110I CYCGRG 1 cut(s) 273
BmgBI CACGTC 2 cut(s) 280, 382
BmgT120I GGNCC 2 cut(s) 257, 1065
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 2 cut(s) 40, 427
BmsI GCATC 8 cut(s) 375, 681, 711, 759, 867, 1045, 1150, 1722
BmtI GCTAGC 1 cut(s) 1524
BoxI GACNNNNGTC 1 cut(s) 115
BpmI CTGGAG 4 cut(s) 503, 525, 603, 1515
Bpu10I CCTNAGC 1 cut(s) 1814
Bpu14I TTCGAA 2 cut(s) 248, 1616
BpuMI CCSGG 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 1398
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 107, 1493
Bse118I RCCGGY 2 cut(s) 164, 259
Bse1I ACTGG 1 cut(s) 1705
Bse3DI GCAATG 8 cut(s) 50, 168, 232, 516, 651, 1677, 1743, 1830
Bse8I GATNNNNATC 1 cut(s) 1398
BseBI CCWGG 1 cut(s) 40
BseGI GGATG 4 cut(s) 444, 696, 1162, 1453
BseJI GATNNNNATC 1 cut(s) 1398
BseLI CCNNNNNNNGG 3 cut(s) 39, 107, 1493
BseMI GCAATG 8 cut(s) 50, 168, 232, 516, 651, 1677, 1743, 1830
BseMII CTCAG 6 cut(s) 288, 381, 542, 941, 1038, 1805
BseNI ACTGG 1 cut(s) 1705
BseRI GAGGAG 2 cut(s) 316, 560
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 2 cut(s) 1347, 1546
BseYI CCCAGC 1 cut(s) 1343
BsgI GTGCAG 1 cut(s) 1354
Bsh1236I CGCG 2 cut(s) 73, 182
BshFI GGCC 3 cut(s) 259, 1067, 1844
BshNI GGYRCC 1 cut(s) 123
BsiHKAI GWGCWC 3 cut(s) 85, 800, 867
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 5 cut(s) 165, 260, 426, 881, 1525
BslFI GGGAC 2 cut(s) 817, 1658
BslI CCNNNNNNNGG 3 cut(s) 39, 107, 1493
BsmAI GTCTC 3 cut(s) 270, 901, 1746
BsmBI CGTCTC 1 cut(s) 270
BsmFI GGGAC 2 cut(s) 817, 1658
BsmI GAATGC 4 cut(s) 460, 511, 817, 1825
BsnI GGCC 3 cut(s) 259, 1067, 1844
BsoBI CYCGRG 1 cut(s) 273
Bsp119I TTCGAA 2 cut(s) 248, 1616
Bsp1286I GDGCHC 3 cut(s) 85, 800, 867
BspACI CCGC 5 cut(s) 86, 89, 688, 1232, 1748
BspANI GGCC 3 cut(s) 259, 1067, 1844
BspCNI CTCAG 6 cut(s) 289, 382, 541, 940, 1037, 1806
BspFNI CGCG 2 cut(s) 73, 182
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 1636
BspMI ACCTGC 2 cut(s) 1629, 1673
BspOI GCTAGC 1 cut(s) 1524
BspPI GGATC 3 cut(s) 544, 1382, 1513
BspT104I TTCGAA 2 cut(s) 248, 1616
BspT107I GGYRCC 1 cut(s) 123
BsrDI GCAATG 8 cut(s) 50, 168, 232, 516, 651, 1677, 1743, 1830
BsrFI RCCGGY 2 cut(s) 164, 259
BsrI ACTGG 1 cut(s) 1705
BssAI RCCGGY 2 cut(s) 164, 259
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 4 cut(s) 375, 939, 1304, 1770
Bst6I CTCTTC 3 cut(s) 389, 1866, 1875
BstBI TTCGAA 2 cut(s) 248, 1616
BstDEI CTNAG 8 cut(s) 297, 390, 528, 927, 1024, 1100, 1814, 1853
BstEII GGTNACC 1 cut(s) 421
BstF5I GGATG 4 cut(s) 444, 696, 1162, 1453
BstFNI CGCG 2 cut(s) 73, 182
BstHHI GCGC 2 cut(s) 75, 184
BstMAI GTCTC 3 cut(s) 270, 901, 1746
BstMWI GCNNNNNNNGC 7 cut(s) 165, 170, 179, 265, 1483, 1576, 1841
BstNI CCWGG 1 cut(s) 40
BstNSI RCATGY 6 cut(s) 188, 272, 1032, 1413, 1477, 1493
BstPAI GACNNNNGTC 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 421
BstSCI CCNGG 2 cut(s) 38, 425
BstSFI CTRYAG 1 cut(s) 1632
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 2 cut(s) 73, 182
BstV1I GCAGC 2 cut(s) 1347, 1546
BstX2I RGATCY 4 cut(s) 536, 1368, 1387, 1505
BstYI RGATCY 4 cut(s) 536, 1368, 1387, 1505
BsuRI GGCC 3 cut(s) 259, 1067, 1844
BtgZI GCGATG 1 cut(s) 734
BtrI CACGTC 2 cut(s) 280, 382
BtsCI GGATG 4 cut(s) 444, 696, 1162, 1453
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 166, 1021
BveI ACCTGC 2 cut(s) 1629, 1673
CciI TCATGA 1 cut(s) 234
CfoI GCGC 2 cut(s) 75, 184
Cfr10I RCCGGY 2 cut(s) 164, 259
Cfr13I GGNCC 2 cut(s) 257, 1065
CsiI ACCWGGT 1 cut(s) 38
Csp6I GTAC 6 cut(s) 124, 134, 430, 1104, 1135, 1893
CviQI GTAC 6 cut(s) 124, 134, 430, 1104, 1135, 1893
DdeI CTNAG 8 cut(s) 297, 390, 528, 927, 1024, 1100, 1814, 1853
DraI TTTAAA 2 cut(s) 964, 1515
Eam1104I CTCTTC 3 cut(s) 389, 1866, 1875
EarI CTCTTC 3 cut(s) 389, 1866, 1875
Ecl136II GAGCTC 2 cut(s) 798, 865
Eco147I AGGCCT 1 cut(s) 1844
Eco24I GRGCYC 2 cut(s) 800, 867
Eco32I GATATC 1 cut(s) 822
Eco53kI GAGCTC 2 cut(s) 798, 865
Eco57I CTGAAG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 421
EcoICRI GAGCTC 2 cut(s) 798, 865
EcoO65I GGTNACC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 822
EcoT22I ATGCAT 2 cut(s) 696, 1411
EcoT38I GRGCYC 2 cut(s) 800, 867
Esp3I CGTCTC 1 cut(s) 270
FalI AAGNNNNNCTT 2 cut(s) 1272, 1304
FaqI GGGAC 2 cut(s) 817, 1658
FauI CCCGC 1 cut(s) 1741
FauNDI CATATG 1 cut(s) 829
FbaI TGATCA 2 cut(s) 144, 211
FblI GTMKAC 1 cut(s) 1113
Fnu4HI GCNGC 4 cut(s) 89, 1233, 1336, 1560
FokI GGATG 4 cut(s) 451, 703, 1169, 1460
FriOI GRGCYC 2 cut(s) 800, 867
Fsp4HI GCNGC 4 cut(s) 89, 1233, 1336, 1560
FspBI CTAG 4 cut(s) 435, 762, 858, 1521
GlaI GCGC 2 cut(s) 74, 183
GluI GCNGC 4 cut(s) 89, 1233, 1336, 1560
GsaI CCCAGC 1 cut(s) 1347
GsuI CTGGAG 4 cut(s) 503, 525, 603, 1515
HaeIII GGCC 3 cut(s) 259, 1067, 1844
HapII CCGG 5 cut(s) 165, 260, 426, 881, 1525
HhaI GCGC 2 cut(s) 75, 184
Hin6I GCGC 2 cut(s) 73, 182
HinP1I GCGC 2 cut(s) 73, 182
HincII GTYRAC 2 cut(s) 1072, 1420
HindII GTYRAC 2 cut(s) 1072, 1420
HinfI GANTC 5 cut(s) 304, 578, 779, 1376, 1528
HpaI GTTAAC 1 cut(s) 1072
HpaII CCGG 5 cut(s) 165, 260, 426, 881, 1525
HphI GGTGA 2 cut(s) 202, 1666
Hpy166II GTNNAC 6 cut(s) 83, 134, 371, 1072, 1114, 1420
Hpy188I TCNGA 6 cut(s) 211, 531, 930, 982, 1326, 1774
Hpy188III TCNNGA 7 cut(s) 235, 482, 542, 582, 754, 1391, 1596
Hpy8I GTNNAC 6 cut(s) 83, 134, 371, 1072, 1114, 1420
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 436, 456, 1352
HpyCH4III ACNGT 4 cut(s) 375, 939, 1304, 1770
HpyCH4IV ACGT 3 cut(s) 279, 381, 1310
HpyF10VI GCNNNNNNNGC 7 cut(s) 165, 170, 179, 265, 1483, 1576, 1841
HpyF3I CTNAG 8 cut(s) 297, 390, 528, 927, 1024, 1100, 1814, 1853
HpySE526I ACGT 3 cut(s) 279, 381, 1310
HspAI GCGC 2 cut(s) 73, 182
KpnI GGTACC 1 cut(s) 127
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Ksp22I TGATCA 2 cut(s) 144, 211
KspAI GTTAAC 1 cut(s) 1072
LmnI GCTCC 1 cut(s) 747
Lsp1109I GCAGC 2 cut(s) 1347, 1546
LweI GCATC 8 cut(s) 375, 681, 711, 759, 867, 1045, 1150, 1722
MabI ACCWGGT 1 cut(s) 38
MaeI CTAG 4 cut(s) 435, 762, 858, 1521
MaeII ACGT 3 cut(s) 279, 381, 1310
MaeIII GTNAC 3 cut(s) 403, 421, 1003
MboII GAAGA 7 cut(s) 406, 1285, 1295, 1367, 1378, 1883, 1892
MfeI CAATTG 2 cut(s) 612, 951
MflI RGATCY 4 cut(s) 536, 1368, 1387, 1505
MhlI GDGCHC 3 cut(s) 85, 800, 867
MlyI GAGTC 2 cut(s) 313, 1385
MmeI TCCRAC 2 cut(s) 1343, 1685
Mph1103I ATGCAT 2 cut(s) 696, 1411
MroNI GCCGGC 1 cut(s) 164
MseI TTAA 4 cut(s) 698, 963, 1071, 1514
MslI CAYNNNNRTG 3 cut(s) 183, 239, 1242
MspI CCGG 5 cut(s) 165, 260, 426, 881, 1525
MspR9I CCNGG 2 cut(s) 40, 427
MunI CAATTG 2 cut(s) 612, 951
Mva1269I GAATGC 4 cut(s) 460, 511, 817, 1825
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 2 cut(s) 73, 182
MwoI GCNNNNNNNGC 7 cut(s) 165, 170, 179, 265, 1483, 1576, 1841
NaeI GCCGGC 1 cut(s) 166
NciI CCSGG 1 cut(s) 427
NdeI CATATG 1 cut(s) 829
NgoMIV GCCGGC 1 cut(s) 164
NheI GCTAGC 1 cut(s) 1520
NlaIV GGNNCC 1 cut(s) 125
NmeAIII GCCGAG 1 cut(s) 497
NmuCI GTSAC 1 cut(s) 1003
NsiI ATGCAT 2 cut(s) 696, 1411
NspI RCATGY 6 cut(s) 188, 272, 1032, 1413, 1477, 1493
NspV TTCGAA 2 cut(s) 248, 1616
PaeI GCATGC 3 cut(s) 272, 1413, 1477
PagI TCATGA 1 cut(s) 234
PaqCI CACCTGC 2 cut(s) 1629, 1673
PceI AGGCCT 1 cut(s) 1844
PctI GAATGC 4 cut(s) 460, 511, 817, 1825
PdiI GCCGGC 1 cut(s) 166
PfeI GAWTC 3 cut(s) 578, 779, 1528
PflMI CCANNNNNTGG 1 cut(s) 1493
PkrI GCNGC 4 cut(s) 90, 1234, 1337, 1561
PleI GAGTC 2 cut(s) 312, 1384
PpsI GAGTC 2 cut(s) 312, 1384
PshAI GACNNNNGTC 1 cut(s) 115
Psp124BI GAGCTC 2 cut(s) 800, 867
Psp6I CCWGG 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 421
PspFI CCCAGC 1 cut(s) 1343
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 2 cut(s) 257, 1065
PstI CTGCAG 1 cut(s) 1636
PsuI RGATCY 4 cut(s) 536, 1368, 1387, 1505
RsaI GTAC 6 cut(s) 125, 135, 431, 1105, 1136, 1894
RsaNI GTAC 6 cut(s) 124, 134, 430, 1104, 1135, 1893
RseI CAYNNNNRTG 3 cut(s) 183, 239, 1242
SacI GAGCTC 2 cut(s) 800, 867
SaqAI TTAA 4 cut(s) 698, 963, 1071, 1514
SatI GCNGC 4 cut(s) 89, 1233, 1336, 1560
Sau96I GGNCC 2 cut(s) 257, 1065
SchI GAGTC 2 cut(s) 313, 1385
ScrFI CCNGG 2 cut(s) 40, 427
SduI GDGCHC 3 cut(s) 85, 800, 867
SexAI ACCWGGT 1 cut(s) 38
SfaNI GCATC 8 cut(s) 375, 681, 711, 759, 867, 1045, 1150, 1722
SfcI CTRYAG 1 cut(s) 1632
SfuI TTCGAA 2 cut(s) 248, 1616
SmiMI CAYNNNNRTG 3 cut(s) 183, 239, 1242
SphI GCATGC 3 cut(s) 272, 1413, 1477
SseBI AGGCCT 1 cut(s) 1844
SsiI CCGC 5 cut(s) 86, 89, 688, 1232, 1748
SspI AATATT 2 cut(s) 478, 1173
SspMI CTAG 4 cut(s) 435, 762, 858, 1521
SstI GAGCTC 2 cut(s) 800, 867
StuI AGGCCT 1 cut(s) 1844
StyD4I CCNGG 2 cut(s) 38, 425
TaaI ACNGT 4 cut(s) 375, 939, 1304, 1770
TaiI ACGT 3 cut(s) 282, 384, 1313
TaqI TCGA 6 cut(s) 248, 285, 908, 1379, 1432, 1616
TatI WGTACW 2 cut(s) 1103, 1134
TauI GCSGC 2 cut(s) 91, 1235
TfiI GAWTC 3 cut(s) 578, 779, 1528
Tru1I TTAA 4 cut(s) 698, 963, 1071, 1514
Tru9I TTAA 4 cut(s) 698, 963, 1071, 1514
TscAI CASTG 2 cut(s) 166, 1021
TseFI GTSAC 1 cut(s) 1003
TseI GCWGC 2 cut(s) 1335, 1559
Tsp45I GTSAC 1 cut(s) 1003
TspGWI ACGGA 2 cut(s) 68, 948
TspRI CASTG 2 cut(s) 166, 1021
Van91I CCANNNNNTGG 1 cut(s) 1493
VneI GTGCAC 1 cut(s) 81
XapI RAATTY 3 cut(s) 18, 844, 1779
XceI RCATGY 6 cut(s) 188, 272, 1032, 1413, 1477, 1493
XmiI GTMKAC 1 cut(s) 1113
XspI CTAG 4 cut(s) 435, 762, 858, 1521
Zsp2I ATGCAT 2 cut(s) 696, 1411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.