Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006232

Physical Location & Seq

Genomic Coordinates Reverse (-)

32309293 .. 32309718

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002336

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTCACTCGTACAGTTGGATAGCTTACTATGCAAAATAAGCAGTGTGAGTCGGTTCAAGCAGCTCCATGCCTGCCTCATTCAAAATTCCCTCCACCAACAAAACCAATGGGTGTCATTGCTCATCAACCAATGCACGCGCCTCCGTGCACCGCCGCCTTATACCCGTCTCATCTTCAACTCTACGCCTCGCCCCAACATCCATGTCTTCACCTCCATGCTCAAATATTACGCCCCTTTGGGCAATGTTTGCTCTAATCAAGTTGTTTCACTATACCAACTACTGCAGCATTGCGAAGACATATGTCTTGGTACATTTGTGTACCCAGTTTTGATCAAATCGTCCGGCAGTGCTGGCATTGAGTTCCACGCGCATGTGGTGAAGTTGGGTCTTGGTTCTGATCATTATGTTCGCAATGCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

142

Amino Acids

15.87

Weight (kDa)

9.17

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14470
fragaria_vesca	FvH4_5g27410
malus_domestica	MD08G1249600.v1.1
prunus_persica	Prupe.1G586800_v2.0.a1
pyrus_communis	pycom08g21600
rosa_chinensis	RchiOBHm_Chr7g0218681 RchiOBHm_Chr7g0218851 RchiOBHm_Chr7g0218861
rosa_laevigata	RLG00000002332 RLG00000002335 RLG00000002336
rosa_multiflora	Rmu_co8331561.1_g000001 Rmu_sc0001301.1_g000001 Rmu_sc0001301.1_g000015 Rmu_sc0005784.1_g000011 Rmu_sc0005784.1_g000017
rosa_roxburghii	Rroxscaffold_3G00240390
rosa_rugosa	Rorug07G0179200 Rorug07G0179200
rosa_samantha	Rh7AG320400 Rh7AG322500 Rh7BG313200 Rh7BG313500 Rh7CG337300 Rh7CG339300
rosa_wichuraiana	Rw7G026900 Rw7G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	139, 371
AciI	CCGC	2 cut(s)	152, 155
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	3 cut(s)	12, 313, 323
AgsI	TTSAA	3 cut(s)	58, 83, 178
AluBI	AGCT	2 cut(s)	24, 64
AluI	AGCT	2 cut(s)	24, 64
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	173
Alw44I	GTGCAC	1 cut(s)	147
ApaLI	GTGCAC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	61, 286
ApoI	RAATTY	1 cut(s)	85
AspLEI	GCGC	2 cut(s)	141, 373
AsuHPI	GGTGA	2 cut(s)	202, 391
BaeGI	GKGCMC	1 cut(s)	151
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BbsI	GAAGAC	2 cut(s)	199, 303
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	73, 298
BclI	TGATCA	2 cut(s)	333, 400
BcoDI	GTCTC	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	284
BisI	GCNGC	3 cut(s)	62, 155, 287
BlsI	GCNGC	3 cut(s)	63, 156, 288
BmrI	ACTGGG	1 cut(s)	320
BmuI	ACTGGG	1 cut(s)	320
BoxI	GACNNNNGTC	1 cut(s)	303
BpiI	GAAGAC	2 cut(s)	199, 303
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	4 cut(s)	116, 250, 289, 421
BseGI	GGATG	1 cut(s)	198
BseMI	GCAATG	4 cut(s)	116, 250, 289, 421
BseNI	ACTGG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	73, 298
Bsh1236I	CGCG	2 cut(s)	139, 371
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	333, 400
BspACI	CCGC	2 cut(s)	152, 155
BspFNI	CGCG	2 cut(s)	139, 371
BspMAI	CTGCAG	1 cut(s)	288
BsrDI	GCAATG	4 cut(s)	116, 250, 289, 421
BsrI	ACTGG	1 cut(s)	326
BssMI	GATC	2 cut(s)	333, 400
Bst4CI	ACNGT	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	73, 137, 355
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	2 cut(s)	139, 371
BstHHI	GCGC	2 cut(s)	141, 373
BstKTI	GATC	2 cut(s)	336, 403
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	2 cut(s)	333, 400
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 39, 249, 354
BstNSI	RCATGY	1 cut(s)	377
BstPAI	GACNNNNGTC	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	2 cut(s)	139, 371
BstV1I	GCAGC	2 cut(s)	73, 298
BstV2I	GAAGAC	2 cut(s)	199, 303
BtsCI	GGATG	1 cut(s)	198
BtsI	GCAGTG	2 cut(s)	49, 355
BtsIMutI	CAGTG	2 cut(s)	49, 355
Cac8I	GCNNGC	3 cut(s)	73, 137, 355
CfoI	GCGC	2 cut(s)	141, 373
Csp6I	GTAC	3 cut(s)	11, 312, 322
CviAII	CATG	4 cut(s)	68, 203, 217, 374
CviJI	RGCY	2 cut(s)	24, 64
CviKI_1	RGCY	2 cut(s)	24, 64
CviQI	GTAC	3 cut(s)	11, 312, 322
DpnI	GATC	2 cut(s)	335, 402
DpnII	GATC	2 cut(s)	333, 400
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	4 cut(s)	71, 206, 220, 377
FatI	CATG	4 cut(s)	67, 202, 216, 373
FauNDI	CATATG	2 cut(s)	302, 422
FbaI	TGATCA	2 cut(s)	333, 400
Fnu4HI	GCNGC	3 cut(s)	62, 155, 287
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	3 cut(s)	62, 155, 287
GlaI	GCGC	2 cut(s)	140, 372
GluI	GCNGC	3 cut(s)	62, 155, 287
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	2 cut(s)	141, 373
Hin1II	CATG	4 cut(s)	71, 206, 220, 377
Hin6I	GCGC	2 cut(s)	139, 371
HinP1I	GCGC	2 cut(s)	139, 371
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	202, 391
Hpy166II	GTNNAC	2 cut(s)	149, 322
Hpy188I	TCNGA	1 cut(s)	400
Hpy8I	GTNNAC	2 cut(s)	149, 322
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	33, 135, 149, 286
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 39, 249, 354
Hsp92II	CATG	4 cut(s)	71, 206, 220, 377
HspAI	GCGC	2 cut(s)	139, 371
Ksp22I	TGATCA	2 cut(s)	333, 400
Kzo9I	GATC	2 cut(s)	333, 400
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	4 cut(s)	85, 339, 339, 358
Lsp1109I	GCAGC	2 cut(s)	73, 298
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	335, 402
MboI	GATC	2 cut(s)	333, 400
MboII	GAAGA	3 cut(s)	166, 199, 308
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	5 cut(s)	86, 101, 152, 198, 223
MslI	CAYNNNNRTG	2 cut(s)	215, 372
MspI	CCGG	1 cut(s)	345
MvnI	CGCG	2 cut(s)	139, 371
MwoI	GCNNNNNNNGC	4 cut(s)	30, 39, 249, 354
NdeI	CATATG	2 cut(s)	302, 422
NdeII	GATC	2 cut(s)	333, 400
NlaIII	CATG	4 cut(s)	71, 206, 220, 377
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	63, 156, 288
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PshAI	GACNNNNGTC	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	288
RsaI	GTAC	3 cut(s)	12, 313, 323
RsaNI	GTAC	3 cut(s)	11, 312, 322
RseI	CAYNNNNRTG	2 cut(s)	215, 372
SatI	GCNGC	3 cut(s)	62, 155, 287
Sau3AI	GATC	2 cut(s)	333, 400
SchI	GAGTC	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	3 cut(s)	26, 66, 215
SfcI	CTRYAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	2 cut(s)	215, 372
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	152, 155
SspI	AATATT	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	15
TasI	AATT	1 cut(s)	85
TauI	GCSGC	1 cut(s)	157
TscAI	CASTG	2 cut(s)	49, 355
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	2 cut(s)	61, 286
Tsp45I	GTSAC	1 cut(s)	3
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	49, 355
VneI	GTGCAC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.