Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Reverse (-)

5014675 .. 5016708

Gene Structure 2034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCGAGATCATCTTTGCGGCTACTAGCTAAGCCTCTCTTGGAGAGCAGGCGAGGGTTTTGCACGAGCTCTGATAAGATCGTAGCTTCGGTGCTTTTCGAGAGATTGCGCGTTGTGATACCCAAACCGGATCCTGCCGTTTACGCTTTCCAGGAGTTCAAATTCAATTGGCAACAGCAGTTTCGTCGTAGATATCCCGATGAGTTCTTAGACATTGCTAAGAACAGAGCCAAGGGTGAATACCAAATGGACTATGTACCTGCTCCTAGAATTACAGAGGCTGACAAGAATAACGATAGGAAGTCATTATATAGAGCCCTAGACAAAAAGTTGTATCTTCTCATATTCGGCAAGCCATTTGGAGCTACTAGTGACAAACCTGTTTGGCACTTCCCAGAGAAAGTCTATGATTCTGAGCCAACTCTTCGCAAGTGCGCGGAATCTGCTTTGAAGTCAGTCGTAGGAGACCTCACTCACACATACTTTGTTGGAAATGCTCCAATGGCTCACATGGCCATACAACCTACAGAAGAAATGCCTGATTTGCCATCTTACAAGAGGTTCTTCTTCAAATGCAGTGTAGTAGCAGCATCGAAATACGACATAAGCAACTGCGAGGATTTTGTGTGGGTAACCAAAGACGAGCTCTTGGAATTCTTCCCTGAGCAAGCTGAATTCTTCAACAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

27.14

Weight (kDa)

8.75

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AccII	CGCG	2 cut(s)	111, 437
AciI	CCGC	2 cut(s)	19, 437
AclWI	GGATC	2 cut(s)	125, 138
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	3 cut(s)	161, 653, 674
AfaI	GTAC	1 cut(s)	258
AgsI	TTSAA	5 cut(s)	160, 166, 451, 571, 682
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	7 cut(s)	29, 69, 86, 365, 646, 671, 699
AluI	AGCT	7 cut(s)	29, 69, 86, 365, 646, 671, 699
Alw21I	GWGCWC	2 cut(s)	71, 648
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	125, 138
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	513
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	3 cut(s)	161, 653, 674
AspLEI	GCGC	2 cut(s)	111, 437
AsuHPI	GGTGA	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	515
BamHI	GGATCC	1 cut(s)	130
BanII	GRGCYC	3 cut(s)	71, 319, 648
BauI	CACGAG	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	71, 648
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	4 cut(s)	42, 76, 167, 201
BciT130I	CCWGG	1 cut(s)	152
BclI	TGATCA	1 cut(s)	690
BcoDI	GTCTC	1 cut(s)	459
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	4 cut(s)	26, 267, 320, 369
BfmI	CTRYAG	1 cut(s)	525
BfuAI	ACCTGC	1 cut(s)	268
BisI	GCNGC	2 cut(s)	20, 588
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	2 cut(s)	21, 589
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	599
Bpu10I	CCTNAGC	1 cut(s)	663
Bpu1102I	GCTNAGC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	405, 654
BseXI	GCAGC	1 cut(s)	599
Bsh1236I	CGCG	2 cut(s)	111, 437
BshFI	GGCC	1 cut(s)	515
BsiHKAI	GWGCWC	2 cut(s)	71, 648
BsiSI	CCGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	515
Bso31I	GGTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	3 cut(s)	71, 319, 648
Bsp143I	GATC	4 cut(s)	8, 78, 130, 690
Bsp1720I	GCTNAGC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	19, 437
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	2 cut(s)	406, 655
BspFNI	CGCG	2 cut(s)	111, 437
BspLI	GGNNCC	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	125, 138
BspTNI	GGTCTC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	4 cut(s)	8, 78, 130, 690
BssSI	CACGAG	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	50, 353, 669
BstDEI	CTNAG	5 cut(s)	30, 208, 219, 414, 663
BstEII	GGTNACC	1 cut(s)	631
BstFNI	CGCG	2 cut(s)	111, 437
BstHHI	GCGC	2 cut(s)	111, 437
BstKTI	GATC	4 cut(s)	11, 81, 133, 693
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	4 cut(s)	8, 78, 130, 690
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 443, 503, 512, 544
BstNI	CCWGG	1 cut(s)	152
BstPI	GGTNACC	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	525
BstUI	CGCG	2 cut(s)	111, 437
BstV1I	GCAGC	1 cut(s)	599
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	515
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	583
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	50, 353, 669
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	2 cut(s)	111, 437
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	1 cut(s)	511
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	5 cut(s)	30, 208, 219, 414, 663
DpnI	GATC	4 cut(s)	10, 80, 132, 692
DpnII	GATC	4 cut(s)	8, 78, 130, 690
EaeI	YGGCCR	1 cut(s)	513
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Ecl136II	GAGCTC	2 cut(s)	69, 646
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	3 cut(s)	71, 319, 648
Eco31I	GGTCTC	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	194
Eco53kI	GAGCTC	2 cut(s)	69, 646
Eco91I	GGTNACC	1 cut(s)	631
EcoICRI	GAGCTC	2 cut(s)	69, 646
EcoO65I	GGTNACC	1 cut(s)	631
EcoRI	GAATTC	2 cut(s)	653, 674
EcoRII	CCWGG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	3 cut(s)	71, 319, 648
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	514
FaiI	YATR	9 cut(s)	255, 310, 312, 344, 408, 481, 512, 518, 605
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 548, 580
FatI	CATG	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	690
Fnu4HI	GCNGC	2 cut(s)	20, 588
FriOI	GRGCYC	3 cut(s)	71, 319, 648
Fsp4HI	GCNGC	2 cut(s)	20, 588
FspBI	CTAG	4 cut(s)	26, 267, 320, 369
GlaI	GCGC	2 cut(s)	110, 436
GluI	GCNGC	2 cut(s)	20, 588
HaeIII	GGCC	1 cut(s)	515
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	2 cut(s)	111, 437
Hin1II	CATG	1 cut(s)	514
Hin6I	GCGC	2 cut(s)	109, 435
HinP1I	GCGC	2 cut(s)	109, 435
HinfI	GANTC	2 cut(s)	410, 440
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	73, 415
Hpy188III	TCNNGA	2 cut(s)	100, 197
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	63, 576
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 443, 503, 512, 544
HpyF3I	CTNAG	5 cut(s)	30, 208, 219, 414, 663
Hsp92II	CATG	1 cut(s)	514
HspAI	GCGC	2 cut(s)	109, 435
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	8, 78, 130, 690
LmnI	GCTCC	3 cut(s)	268, 362, 502
Lsp1109I	GCAGC	1 cut(s)	599
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	4 cut(s)	26, 267, 320, 369
MaeIII	GTNAC	2 cut(s)	371, 631
MalI	GATC	4 cut(s)	10, 80, 132, 692
MboI	GATC	4 cut(s)	8, 78, 130, 690
MboII	GAAGA	7 cut(s)	329, 416, 542, 556, 559, 649, 670
MfeI	CAATTG	1 cut(s)	166
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	3 cut(s)	71, 319, 648
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	5 cut(s)	161, 166, 270, 653, 674
MluNI	TGGCCA	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	6 cut(s)	45, 47, 271, 479, 552, 610
Mox20I	TGGCCA	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	515
Msp20I	TGGCCA	1 cut(s)	515
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	2 cut(s)	111, 437
MwoI	GCNNNNNNNGC	5 cut(s)	143, 443, 503, 512, 544
NdeII	GATC	4 cut(s)	8, 78, 130, 690
NlaIII	CATG	1 cut(s)	514
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	410, 440
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	21, 589
Psp124BI	GAGCTC	2 cut(s)	71, 648
Psp6I	CCWGG	1 cut(s)	150
PspEI	GGTNACC	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SacI	GAGCTC	2 cut(s)	71, 648
SatI	GCNGC	2 cut(s)	20, 588
Sau3AI	GATC	4 cut(s)	8, 78, 130, 690
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	3 cut(s)	71, 319, 648
SfaNI	GCATC	1 cut(s)	599
SfcI	CTRYAG	1 cut(s)	525
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	5 cut(s)	161, 166, 270, 653, 674
SsiI	CCGC	2 cut(s)	19, 437
SspMI	CTAG	4 cut(s)	26, 267, 320, 369
SstI	GAGCTC	2 cut(s)	71, 648
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	231
TaqI	TCGA	2 cut(s)	99, 593
TasI	AATT	5 cut(s)	161, 166, 270, 653, 674
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	2 cut(s)	410, 440
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	371
TspRI	CASTG	1 cut(s)	583
XapI	RAATTY	3 cut(s)	161, 653, 674
XspI	CTAG	4 cut(s)	26, 267, 320, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.