Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Forward (+)

10910372 .. 10913271

Gene Structure 2900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCGGAGGTCGATTGCGAGTCTGGGTGGGTCCGTCGTGAAGAGCCGAGGGTTTAGCACGAGCTCGTCGCCGGAGAAAATCGTCGCGTCCGTACTCTTCGAGAGGCTCCCGGTTGTTATTCCCAAAATCGACCCCATCGTCTATGCATTTCAGGAGTTCTCGTTTCGGTGGCGACAGCAATATCGACGCAGATATCCGGATGAGCTTTTAGATAAGTCTAATGCTAGTATTAGGGGAAAAGGAGACTACCAAATTGATTATGTACCGGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACAGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCCATGGGACATATTGCAATGGAGTCATCAGAGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGAAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.96

Weight (kDa)

9.07

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	2 cut(s)	4, 433
AclWI	GGATC	2 cut(s)	284, 376
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	3 cut(s)	93, 264, 413
AgsI	TTSAA	2 cut(s)	562, 577
AluBI	AGCT	5 cut(s)	63, 205, 287, 677, 705
AluI	AGCT	5 cut(s)	63, 205, 287, 677, 705
Alw21I	GWGCWC	2 cut(s)	65, 325
Alw26I	GTCTC	3 cut(s)	237, 419, 585
AlwI	GGATC	2 cut(s)	284, 376
AlwNI	CAGNNNCTG	1 cut(s)	449
Aor13HI	TCCGGA	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	663
AspA2I	CCTAGG	1 cut(s)	466
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	482, 649
AvaII	GGWCC	1 cut(s)	30
AvrII	CCTAGG	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	340
Bbv12I	GWGCWC	2 cut(s)	65, 325
BbvCI	CCTCAGC	1 cut(s)	686
BccI	CCATC	3 cut(s)	143, 562, 649
BclI	TGATCA	1 cut(s)	696
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	3 cut(s)	237, 419, 585
BfaI	CTAG	2 cut(s)	225, 467
BglI	GCCNNNNNGGC	1 cut(s)	391
BlnI	CCTAGG	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	3 cut(s)	31, 107, 270
BmrFI	CCNGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	567
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	5 cut(s)	46, 272, 466, 507, 642
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 535, 565
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	386
Bse3DI	GCAATG	3 cut(s)	311, 428, 528
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	5 cut(s)	46, 272, 466, 507, 642
BseGI	GGATG	2 cut(s)	205, 652
BseMI	GCAATG	3 cut(s)	311, 428, 528
BseMII	CTCAG	4 cut(s)	411, 660, 669, 700
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	437
BsgI	GTGCAG	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	65, 325
BsiSI	CCGG	4 cut(s)	71, 110, 197, 266
BslFI	GGGAC	2 cut(s)	463, 525
BsmAI	GTCTC	3 cut(s)	237, 419, 585
BsmFI	GGGAC	2 cut(s)	463, 525
Bsp1286I	GDGCHC	2 cut(s)	65, 325
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	276, 368, 472, 696
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	2 cut(s)	4, 433
BspCNI	CTCAG	4 cut(s)	412, 661, 670, 699
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	31, 107, 270
BspPI	GGATC	2 cut(s)	284, 376
BspQI	GCTCTTC	1 cut(s)	35
BsrDI	GCAATG	3 cut(s)	311, 428, 528
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	5 cut(s)	46, 272, 466, 507, 642
BssMI	GATC	4 cut(s)	276, 368, 472, 696
BssSI	CACGAG	1 cut(s)	58
BssT1I	CCWWGG	3 cut(s)	466, 507, 642
Bst2BI	CACGAG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	459
Bst6I	CTCTTC	2 cut(s)	35, 101
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstDEI	CTNAG	4 cut(s)	420, 669, 678, 686
BstDSI	CCRYGG	2 cut(s)	272, 507
BstEII	GGTNACC	1 cut(s)	637
BstF5I	GGATG	2 cut(s)	205, 652
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	4 cut(s)	279, 371, 475, 699
BstMAI	GTCTC	3 cut(s)	237, 419, 585
BstMBI	GATC	4 cut(s)	276, 368, 472, 696
BstMWI	GCNNNNNNNGC	2 cut(s)	391, 449
BstPI	GGTNACC	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BtgI	CCRYGG	2 cut(s)	272, 507
BtsCI	GGATG	2 cut(s)	205, 652
BtsIMutI	CAGTG	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	2 cut(s)	75, 195
Csp6I	GTAC	3 cut(s)	92, 263, 412
CviAII	CATG	2 cut(s)	365, 508
CviJI	RGCY	9 cut(s)	45, 63, 106, 205, 269, 287, 385, 677, 705
CviKI_1	RGCY	9 cut(s)	45, 63, 106, 205, 269, 287, 385, 677, 705
CviQI	GTAC	3 cut(s)	92, 263, 412
DdeI	CTNAG	4 cut(s)	420, 669, 678, 686
DpnI	GATC	4 cut(s)	278, 370, 474, 698
DpnII	GATC	4 cut(s)	276, 368, 472, 696
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	2 cut(s)	35, 101
EarI	CTCTTC	2 cut(s)	35, 101
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	3 cut(s)	466, 507, 642
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	303
Eco91I	GGTNACC	1 cut(s)	637
EcoICRI	GAGCTC	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	3 cut(s)	466, 507, 642
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	3 cut(s)	466, 507, 642
FaeI	CATG	2 cut(s)	368, 511
FaiI	YATR	7 cut(s)	144, 261, 354, 366, 487, 509, 516
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	2 cut(s)	463, 525
FatI	CATG	2 cut(s)	364, 507
FbaI	TGATCA	1 cut(s)	696
FokI	GGATG	2 cut(s)	212, 659
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	225, 467
HapII	CCGG	4 cut(s)	71, 110, 197, 266
HgaI	GACGC	2 cut(s)	75, 195
Hin1II	CATG	2 cut(s)	368, 511
HinfI	GANTC	5 cut(s)	19, 416, 446, 527, 548
HpaII	CCGG	4 cut(s)	71, 110, 197, 266
HphI	GGTGA	2 cut(s)	482, 649
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	421, 535
Hpy188III	TCNNGA	6 cut(s)	37, 100, 152, 197, 401, 668
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	4 cut(s)	38, 70, 86, 189
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4V	TGCA	6 cut(s)	146, 316, 443, 452, 521, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	391, 449
HpyF3I	CTNAG	4 cut(s)	420, 669, 678, 686
Hsp92II	CATG	2 cut(s)	368, 511
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	4 cut(s)	276, 368, 472, 696
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	3 cut(s)	111, 274, 508
MaeI	CTAG	2 cut(s)	225, 467
MaeIII	GTNAC	3 cut(s)	356, 541, 637
MalI	GATC	4 cut(s)	278, 370, 474, 698
MboI	GATC	4 cut(s)	276, 368, 472, 696
MboII	GAAGA	4 cut(s)	52, 88, 335, 345
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	2 cut(s)	65, 325
MluCI	AATT	4 cut(s)	252, 566, 609, 650
MlyI	GAGTC	4 cut(s)	28, 425, 536, 542
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	5 cut(s)	41, 96, 415, 616, 695
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	1 cut(s)	605
MspI	CCGG	4 cut(s)	71, 110, 197, 266
MspR9I	CCNGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	391, 449
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	4 cut(s)	276, 368, 472, 696
NlaIII	CATG	2 cut(s)	368, 511
NlaIV	GGNNCC	3 cut(s)	31, 107, 270
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	541, 637
NsiI	ATGCAT	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 135
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	446
PleI	GAGTC	4 cut(s)	27, 424, 535, 542
PpsI	GAGTC	4 cut(s)	27, 424, 535, 542
Psp124BI	GAGCTC	1 cut(s)	65
PspEI	GGTNACC	1 cut(s)	637
PspN4I	GGNNCC	3 cut(s)	31, 107, 270
PspPI	GGNCC	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	368
RsaI	GTAC	3 cut(s)	93, 264, 413
RsaNI	GTAC	3 cut(s)	92, 263, 412
SacI	GAGCTC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	605
Sau3AI	GATC	4 cut(s)	276, 368, 472, 696
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	4 cut(s)	28, 425, 536, 542
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	65, 325
SetI	ASST	7 cut(s)	11, 65, 207, 289, 472, 679, 707
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	4 cut(s)	252, 566, 609, 650
SsiI	CCGC	2 cut(s)	4, 433
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	2 cut(s)	225, 467
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	3 cut(s)	466, 507, 642
TaaI	ACNGT	1 cut(s)	459
TaqI	TCGA	4 cut(s)	11, 99, 129, 184
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	4 cut(s)	252, 566, 609, 650
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	605
Tru9I	TTAA	1 cut(s)	605
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	541, 637
Tsp45I	GTSAC	2 cut(s)	541, 637
TspDTI	ATGAA	1 cut(s)	663
TspGWI	ACGGA	3 cut(s)	22, 79, 289
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	30
XmaJI	CCTAGG	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	2 cut(s)	225, 467
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.