Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Forward (+)

10616505 .. 10619069

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCGGAGGTCGATTGCGAGTCTGGGTGGGTCCGTCGTGAAGAGCCGAGGGTTTAGCACGAGCTCGTCGCCGGAGAAAATCGTCGCGTCCGTACTCTTCGAGAGGCTTCCGGTTGTTATTCCCAAAATCGACCCCATCGTCTATGCATTTCAGGAGTTCTCGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACAGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCCATGGGACATATTGCAATGGAGTCATCAGAGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGAAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.97

Weight (kDa)

7.76

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	4, 286
AclWI	GGATC	1 cut(s)	229
AfaI	GTAC	2 cut(s)	93, 266
AgsI	TTSAA	2 cut(s)	415, 430
AluBI	AGCT	3 cut(s)	63, 530, 558
AluI	AGCT	3 cut(s)	63, 530, 558
Alw21I	GWGCWC	2 cut(s)	65, 178
Alw26I	GTCTC	2 cut(s)	272, 438
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	516
AspA2I	CCTAGG	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	335, 502
AvaII	GGWCC	1 cut(s)	30
AvrII	CCTAGG	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	2 cut(s)	65, 178
BbvCI	CCTCAGC	1 cut(s)	539
BccI	CCATC	3 cut(s)	143, 415, 502
BclI	TGATCA	1 cut(s)	549
BcoDI	GTCTC	2 cut(s)	272, 438
BfaI	CTAG	1 cut(s)	320
BglI	GCCNNNNNGGC	1 cut(s)	244
BlnI	CCTAGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	420
BsaJI	CCNNGG	4 cut(s)	46, 319, 360, 495
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 388, 418
Bse1I	ACTGG	1 cut(s)	239
Bse3DI	GCAATG	3 cut(s)	164, 281, 381
BseDI	CCNNGG	4 cut(s)	46, 319, 360, 495
BseGI	GGATG	1 cut(s)	505
BseMI	GCAATG	3 cut(s)	164, 281, 381
BseMII	CTCAG	4 cut(s)	264, 513, 522, 553
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	65, 178
BsiSI	CCGG	2 cut(s)	71, 110
BslFI	GGGAC	2 cut(s)	316, 378
BsmAI	GTCTC	2 cut(s)	272, 438
BsmFI	GGGAC	2 cut(s)	316, 378
Bsp1286I	GDGCHC	2 cut(s)	65, 178
Bsp143I	GATC	3 cut(s)	221, 325, 549
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	2 cut(s)	4, 286
BspCNI	CTCAG	4 cut(s)	265, 514, 523, 552
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	35
BsrDI	GCAATG	3 cut(s)	164, 281, 381
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	4 cut(s)	46, 319, 360, 495
BssMI	GATC	3 cut(s)	221, 325, 549
BssSI	CACGAG	1 cut(s)	58
BssT1I	CCWWGG	3 cut(s)	319, 360, 495
Bst2BI	CACGAG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	2 cut(s)	35, 101
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstDEI	CTNAG	4 cut(s)	273, 522, 531, 539
BstDSI	CCRYGG	1 cut(s)	360
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	3 cut(s)	224, 328, 552
BstMAI	GTCTC	2 cut(s)	272, 438
BstMBI	GATC	3 cut(s)	221, 325, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 302
BstPI	GGTNACC	1 cut(s)	490
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BtgI	CCRYGG	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	505
CaiI	CAGNNNCTG	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	92, 265
CviAII	CATG	2 cut(s)	218, 361
CviJI	RGCY	6 cut(s)	45, 63, 106, 238, 530, 558
CviKI_1	RGCY	6 cut(s)	45, 63, 106, 238, 530, 558
CviQI	GTAC	2 cut(s)	92, 265
DdeI	CTNAG	4 cut(s)	273, 522, 531, 539
DpnI	GATC	3 cut(s)	223, 327, 551
DpnII	GATC	3 cut(s)	221, 325, 549
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	2 cut(s)	35, 101
EarI	CTCTTC	2 cut(s)	35, 101
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	3 cut(s)	319, 360, 495
Eco24I	GRGCYC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	63
Eco91I	GGTNACC	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	490
EcoT14I	CCWWGG	3 cut(s)	319, 360, 495
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	3 cut(s)	319, 360, 495
FaeI	CATG	2 cut(s)	221, 364
FaiI	YATR	6 cut(s)	144, 207, 219, 340, 362, 369
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	2 cut(s)	316, 378
FatI	CATG	2 cut(s)	217, 360
FbaI	TGATCA	1 cut(s)	549
FokI	GGATG	1 cut(s)	512
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	320
HapII	CCGG	2 cut(s)	71, 110
HgaI	GACGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	221, 364
HinfI	GANTC	5 cut(s)	19, 269, 299, 380, 401
HpaII	CCGG	2 cut(s)	71, 110
HphI	GGTGA	2 cut(s)	335, 502
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	274, 388
Hpy188III	TCNNGA	5 cut(s)	37, 100, 152, 254, 521
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	3 cut(s)	38, 70, 86
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	6 cut(s)	146, 169, 296, 305, 374, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 302
HpyF3I	CTNAG	4 cut(s)	273, 522, 531, 539
Hsp92II	CATG	2 cut(s)	221, 364
Ksp22I	TGATCA	1 cut(s)	549
Kzo9I	GATC	3 cut(s)	221, 325, 549
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	8 cut(s)	8, 84, 123, 137, 229, 252, 267, 534
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	3 cut(s)	209, 394, 490
MalI	GATC	3 cut(s)	223, 327, 551
MboI	GATC	3 cut(s)	221, 325, 549
MboII	GAAGA	4 cut(s)	52, 88, 188, 198
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	65, 178
MluCI	AATT	3 cut(s)	419, 462, 503
MlyI	GAGTC	4 cut(s)	28, 278, 389, 395
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	5 cut(s)	41, 96, 268, 469, 548
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	1 cut(s)	458
MspI	CCGG	2 cut(s)	71, 110
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	244, 302
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	3 cut(s)	221, 325, 549
NlaIII	CATG	2 cut(s)	221, 364
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	394, 490
NsiI	ATGCAT	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 135
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	299
PleI	GAGTC	4 cut(s)	27, 277, 388, 395
PpsI	GAGTC	4 cut(s)	27, 277, 388, 395
Psp124BI	GAGCTC	1 cut(s)	65
PspEI	GGTNACC	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	2 cut(s)	93, 266
RsaNI	GTAC	2 cut(s)	92, 265
SacI	GAGCTC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	458
Sau3AI	GATC	3 cut(s)	221, 325, 549
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	4 cut(s)	28, 278, 389, 395
SduI	GDGCHC	2 cut(s)	65, 178
SetI	ASST	5 cut(s)	11, 65, 325, 532, 560
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	3 cut(s)	419, 462, 503
SsiI	CCGC	2 cut(s)	4, 286
SspI	AATATT	1 cut(s)	515
SspMI	CTAG	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	65
StyI	CCWWGG	3 cut(s)	319, 360, 495
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	11, 99, 129
TaqII	GACCGA	1 cut(s)	413
TasI	AATT	3 cut(s)	419, 462, 503
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TseFI	GTSAC	2 cut(s)	394, 490
Tsp45I	GTSAC	2 cut(s)	394, 490
TspDTI	ATGAA	1 cut(s)	516
TspGWI	ACGGA	2 cut(s)	22, 79
VpaK11BI	GGWCC	1 cut(s)	30
XmaJI	CCTAGG	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.