Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Reverse (-)

58812752 .. 58816875

Gene Structure 4124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG313700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTACTTTGTTGTTTTGGCCTTTGGGATTGTAGGTTTCGGTGGCGACAGCAATATCGACGCAGATATCCGGATGAACTTTTAGACAAGTCTAATGCTAGGGGAAAAGGAGACTACCAAATTGATTATGTACCGGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACAGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCCATGGGACATATTGCAATGGAGTCATCAGAGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

22.34

Weight (kDa)

8.21

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	2 cut(s)	152, 244
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	2 cut(s)	132, 281
AgsI	TTSAA	2 cut(s)	430, 445
AluBI	AGCT	3 cut(s)	155, 545, 573
AluI	AGCT	3 cut(s)	155, 545, 573
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	3 cut(s)	105, 287, 453
AlwI	GGATC	2 cut(s)	152, 244
AlwNI	CAGNNNCTG	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	531
AspA2I	CCTAGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	350, 517
AvrII	CCTAGG	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	193
BbvCI	CCTCAGC	1 cut(s)	554
BccI	CCATC	2 cut(s)	430, 517
BclI	TGATCA	1 cut(s)	564
BcoDI	GTCTC	3 cut(s)	105, 287, 453
BfaI	CTAG	2 cut(s)	99, 335
BglI	GCCNNNNNGGC	1 cut(s)	259
BlnI	CCTAGG	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	435
BsaJI	CCNNGG	4 cut(s)	140, 334, 375, 510
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	3 cut(s)	179, 296, 396
BseAI	TCCGGA	1 cut(s)	70
BseDI	CCNNGG	4 cut(s)	140, 334, 375, 510
BseGI	GGATG	2 cut(s)	79, 520
BseMI	GCAATG	3 cut(s)	179, 296, 396
BseMII	CTCAG	4 cut(s)	279, 528, 537, 568
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	71, 134
BslFI	GGGAC	2 cut(s)	331, 393
BsmAI	GTCTC	3 cut(s)	105, 287, 453
BsmFI	GGGAC	2 cut(s)	331, 393
BsnI	GGCC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	144, 236, 340, 564
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	4 cut(s)	280, 529, 538, 567
BspEI	TCCGGA	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	152, 244
BsrDI	GCAATG	3 cut(s)	179, 296, 396
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	4 cut(s)	140, 334, 375, 510
BssMI	GATC	4 cut(s)	144, 236, 340, 564
BssT1I	CCWWGG	3 cut(s)	334, 375, 510
Bst4CI	ACNGT	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstDEI	CTNAG	4 cut(s)	288, 537, 546, 554
BstDSI	CCRYGG	2 cut(s)	140, 375
BstEII	GGTNACC	1 cut(s)	505
BstF5I	GGATG	2 cut(s)	79, 520
BstKTI	GATC	4 cut(s)	147, 239, 343, 567
BstMAI	GTCTC	3 cut(s)	105, 287, 453
BstMBI	GATC	4 cut(s)	144, 236, 340, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 317
BstPI	GGTNACC	1 cut(s)	505
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	2 cut(s)	140, 375
BtsCI	GGATG	2 cut(s)	79, 520
BtsIMutI	CAGTG	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	133
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	131, 280
CviAII	CATG	2 cut(s)	233, 376
CviJI	RGCY	6 cut(s)	21, 137, 155, 253, 545, 573
CviKI_1	RGCY	6 cut(s)	21, 137, 155, 253, 545, 573
CviQI	GTAC	2 cut(s)	131, 280
DdeI	CTNAG	4 cut(s)	288, 537, 546, 554
DpnI	GATC	4 cut(s)	146, 238, 342, 566
DpnII	GATC	4 cut(s)	144, 236, 340, 564
Eco130I	CCWWGG	3 cut(s)	334, 375, 510
Eco32I	GATATC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	171
Eco91I	GGTNACC	1 cut(s)	505
EcoO65I	GGTNACC	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	68
EcoT14I	CCWWGG	3 cut(s)	334, 375, 510
ErhI	CCWWGG	3 cut(s)	334, 375, 510
FaeI	CATG	2 cut(s)	236, 379
FaiI	YATR	6 cut(s)	129, 222, 234, 355, 377, 384
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	2 cut(s)	331, 393
FatI	CATG	2 cut(s)	232, 375
FbaI	TGATCA	1 cut(s)	564
FokI	GGATG	2 cut(s)	86, 527
FspBI	CTAG	2 cut(s)	99, 335
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	2 cut(s)	71, 134
HgaI	GACGC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	236, 379
HinfI	GANTC	4 cut(s)	284, 314, 395, 416
HpaII	CCGG	2 cut(s)	71, 134
HphI	GGTGA	2 cut(s)	350, 517
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	289, 403
Hpy188III	TCNNGA	3 cut(s)	71, 269, 536
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4V	TGCA	5 cut(s)	184, 311, 320, 389, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 317
HpyF3I	CTNAG	4 cut(s)	288, 537, 546, 554
Hsp92II	CATG	2 cut(s)	236, 379
Kpn2I	TCCGGA	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	144, 236, 340, 564
LmnI	GCTCC	2 cut(s)	142, 376
LpnPI	CCDG	6 cut(s)	84, 147, 244, 267, 282, 549
MaeI	CTAG	2 cut(s)	99, 335
MaeIII	GTNAC	4 cut(s)	3, 224, 409, 505
MalI	GATC	4 cut(s)	146, 238, 342, 566
MboI	GATC	4 cut(s)	144, 236, 340, 564
MboII	GAAGA	2 cut(s)	203, 213
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	4 cut(s)	120, 434, 477, 518
MlyI	GAGTC	3 cut(s)	293, 404, 410
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	3 cut(s)	283, 484, 563
MroI	TCCGGA	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	1 cut(s)	473
MspI	CCGG	2 cut(s)	71, 134
MwoI	GCNNNNNNNGC	2 cut(s)	259, 317
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	4 cut(s)	144, 236, 340, 564
NlaIII	CATG	2 cut(s)	236, 379
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	2 cut(s)	409, 505
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	314
PleI	GAGTC	3 cut(s)	292, 403, 410
PpsI	GAGTC	3 cut(s)	292, 403, 410
PspEI	GGTNACC	1 cut(s)	505
PspN4I	GGNNCC	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	236
RsaI	GTAC	2 cut(s)	132, 281
RsaNI	GTAC	2 cut(s)	131, 280
SaqAI	TTAA	1 cut(s)	473
Sau3AI	GATC	4 cut(s)	144, 236, 340, 564
SchI	GAGTC	3 cut(s)	293, 404, 410
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	5 cut(s)	38, 157, 340, 547, 575
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	4 cut(s)	120, 434, 477, 518
SsiI	CCGC	1 cut(s)	301
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	2 cut(s)	99, 335
StyI	CCWWGG	3 cut(s)	334, 375, 510
TaaI	ACNGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	58
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	4 cut(s)	120, 434, 477, 518
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	409, 505
Tsp45I	GTSAC	2 cut(s)	409, 505
TspDTI	ATGAA	2 cut(s)	90, 531
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	154
XmaJI	CCTAGG	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	2 cut(s)	99, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.