Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Forward (+)

8797229 .. 8800005

Gene Structure 2777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1064600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCAGCGGACGATCACAATATTGCGTGGTCCTCTGGGCAGAGGCCGAGGGTTTTCCTCCACCTCATCGTCTTCCTCCGACAAAATCGTTGCGTCCGTGCTCTTCGAGAGGCTGCCCGTTGTTATTCCCAAAATCGACCCCGTCGTTTATGCGTATCAGGAATTCGCGTTCCGGTGGCGACAGCAATATCGGCGCATATATCCCGATGAGCTTTTAGACAAGTCTAATGCTAGGGGAAAAGGTGACTACCAGATAGATTATGAACCTGCTCTGCGGATCACTGAAGCTGACAAAAAGAATGATAAAAAGTCATTGCAGAGAGCCCTTGACAGAAGACTATATCTTCTTCTCTACGGAACCACTGATGGATCTGCTGGAAAATCAGTCTGGCATTTTCCAGAAAAAGTTTACCAGTCTGAAGACACACTGCGGAAGTGCGCAGAATCTGCATTAAAATCAGTTTTGGGAGATCTGTCACACACATACTTTGTTGGAAATGCTCCCATGGGCCATATGGAACAGACAGCAGAGAATATGAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACGAACAAGTTGAACATTGGGAAGTGCGAGGATTTTGTCTGGGTGACCAAGGATGAATTGATGGAGTACTTTCCTGAGAAAGCTGATTTCCTTAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

26.11

Weight (kDa)

9.04

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	439
Acc36I	ACCTGC	1 cut(s)	274
AccII	CGCG	1 cut(s)	167
AciI	CCGC	3 cut(s)	7, 274, 430
AclWI	GGATC	2 cut(s)	284, 376
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	2 cut(s)	303, 438
AfaI	GTAC	1 cut(s)	638
AgsI	TTSAA	2 cut(s)	553, 583
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	4 cut(s)	211, 287, 653, 681
AluI	AGCT	4 cut(s)	211, 287, 653, 681
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	284, 376
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	43, 508
ApeKI	GCWGC	2 cut(s)	4, 112
ApoI	RAATTY	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	542
AspLEI	GCGC	2 cut(s)	195, 440
AspS9I	GGNCC	2 cut(s)	29, 508
AsuHPI	GGTGA	2 cut(s)	254, 625
AvaII	GGWCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	325
BbsI	GAAGAC	3 cut(s)	63, 340, 426
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	16, 99
BccI	CCATC	2 cut(s)	359, 625
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	274
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	2 cut(s)	5, 113
BlsI	GCNGC	2 cut(s)	6, 114
BmcAI	AGTACT	1 cut(s)	638
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 508
BmiI	GGNNCC	1 cut(s)	358
BpiI	GAAGAC	3 cut(s)	63, 340, 426
Bpu10I	CCTNAGC	1 cut(s)	662
BpuEI	CTTGAG	1 cut(s)	543
BsaJI	CCNNGG	3 cut(s)	46, 504, 618
BsaWI	WCCGGW	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	311
BseDI	CCNNGG	3 cut(s)	46, 504, 618
BseGI	GGATG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	16, 99
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	45, 510
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	561
BsnI	GGCC	2 cut(s)	45, 510
Bsp1286I	GDGCHC	2 cut(s)	102, 325
Bsp143I	GATC	5 cut(s)	12, 276, 368, 469, 672
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	3 cut(s)	7, 274, 430
BspANI	GGCC	2 cut(s)	45, 510
BspCNI	CTCAG	1 cut(s)	637
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	2 cut(s)	284, 376
BspQI	GCTCTTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	3 cut(s)	46, 504, 618
BssMI	GATC	5 cut(s)	12, 276, 368, 469, 672
BssT1I	CCWWGG	2 cut(s)	504, 618
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstDEI	CTNAG	2 cut(s)	645, 662
BstDSI	CCRYGG	1 cut(s)	504
BstEII	GGTNACC	1 cut(s)	613
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	195, 440
BstKTI	GATC	5 cut(s)	15, 279, 371, 472, 675
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	5 cut(s)	12, 276, 368, 469, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 446
BstPI	GGTNACC	1 cut(s)	613
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	16, 99
BstV2I	GAAGAC	3 cut(s)	63, 340, 426
BstX2I	RGATCY	2 cut(s)	368, 469
BstYI	RGATCY	2 cut(s)	368, 469
BsuRI	GGCC	2 cut(s)	45, 510
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	628
BtsI	GCAGTG	1 cut(s)	425
BtsIMutI	CAGTG	3 cut(s)	279, 360, 425
BveI	ACCTGC	1 cut(s)	274
CaiI	CAGNNNCTG	1 cut(s)	446
CfoI	GCGC	2 cut(s)	195, 440
Cfr13I	GGNCC	2 cut(s)	29, 508
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	1 cut(s)	505
CviJI	RGCY	8 cut(s)	45, 112, 211, 287, 323, 510, 653, 681
CviKI_1	RGCY	8 cut(s)	45, 112, 211, 287, 323, 510, 653, 681
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	2 cut(s)	645, 662
DpnI	GATC	5 cut(s)	14, 278, 370, 471, 674
DpnII	GATC	5 cut(s)	12, 276, 368, 469, 672
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	504, 618
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	303, 438
Eco91I	GGTNACC	1 cut(s)	613
EcoO65I	GGTNACC	1 cut(s)	613
EcoRI	GAATTC	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	504, 618
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	2 cut(s)	504, 618
FaeI	CATG	1 cut(s)	508
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FatI	CATG	1 cut(s)	504
FauNDI	CATATG	1 cut(s)	513
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	5, 113
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	2 cut(s)	5, 113
FspBI	CTAG	1 cut(s)	231
FspI	TGCGCA	1 cut(s)	439
GlaI	GCGC	2 cut(s)	194, 439
GluI	GCNGC	2 cut(s)	5, 113
HaeIII	GGCC	2 cut(s)	45, 510
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	195, 440
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	2 cut(s)	193, 438
HinP1I	GCGC	2 cut(s)	193, 438
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	2 cut(s)	254, 625
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	79, 418
Hpy188III	TCNNGA	5 cut(s)	106, 158, 203, 398, 644
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4V	TGCA	4 cut(s)	4, 316, 449, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 446
HpyF3I	CTNAG	2 cut(s)	645, 662
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	2 cut(s)	193, 438
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	5 cut(s)	12, 276, 368, 469, 672
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	2 cut(s)	16, 99
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	242, 474, 613
MalI	GATC	5 cut(s)	14, 278, 370, 471, 674
MboI	GATC	5 cut(s)	12, 276, 368, 469, 672
MboII	GAAGA	6 cut(s)	63, 94, 335, 338, 345, 431
MflI	RGATCY	2 cut(s)	368, 469
MhlI	GDGCHC	2 cut(s)	102, 325
MluCI	AATT	3 cut(s)	161, 542, 626
MmeI	TCCRAC	2 cut(s)	102, 472
MnlI	CCTC	8 cut(s)	35, 41, 42, 67, 73, 85, 102, 592
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	190, 446
NcoI	CCATGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	5 cut(s)	12, 276, 368, 469, 672
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	1 cut(s)	358
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	3 cut(s)	242, 474, 613
NsbI	TGCGCA	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 141
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	443
PflFI	GACNNNGTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	6, 114
PspEI	GGTNACC	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	29, 508
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	368, 469
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	2 cut(s)	5, 113
Sau3AI	GATC	5 cut(s)	12, 276, 368, 469, 672
Sau96I	GGNCC	2 cut(s)	29, 508
ScaI	AGTACT	1 cut(s)	638
SduI	GDGCHC	2 cut(s)	102, 325
SetI	ASST	7 cut(s)	65, 213, 244, 268, 289, 655, 683
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	3 cut(s)	161, 542, 626
SsiI	CCGC	3 cut(s)	7, 274, 430
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	504, 618
TaqI	TCGA	2 cut(s)	105, 135
TasI	AATT	3 cut(s)	161, 542, 626
TatI	WGTACW	1 cut(s)	636
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	3 cut(s)	286, 367, 432
TseFI	GTSAC	3 cut(s)	242, 474, 613
TseI	GCWGC	2 cut(s)	4, 112
Tsp45I	GTSAC	3 cut(s)	242, 474, 613
TspDTI	ATGAA	3 cut(s)	276, 551, 639
TspGWI	ACGGA	2 cut(s)	85, 369
TspRI	CASTG	3 cut(s)	286, 367, 432
Tth111I	GACNNNGTC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.