Rorug02G0269900

39S ribosomal protein L46

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002375
Physical Location & Seq
Reverse (-)
28538435 .. 28539437
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0269900.1

Sequence Viewer

Length: 387 bp
ATGGAGCTGGGAGAGAGGAGAATTGGGATTTGGGCACAACCAGGGGCGGATCCAGCCACGGGCCAGCCTCCTGAAGTGACCGAACTACGGACTCCCGAACTCCAGCGCTGTTCCTTCACTTCTTCCCCTCCTCCTCTCCGTCTCCGAGCCCCAGCCTCCAGTTCTTCCGTTTTTCGGCGGCTCGCGGCTCAGCCCTTGATCAATGTTCAAAATTGCTGGGTTATTCACTCCAGTCACTCCACCGAAAGAGAAGGGGCAGAGCAGTTCCGAATAGATGTTGCCCATAATCCAAATGATACAGAGGAGTCCATTTGGTGCTTTCTCTGTGAAGCTCAATTATATGGAATTAAGGAAGCAAGGGAACGGTTTCTTGAGACAAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.47

Weight (kDa)

5.38

Isoelectric Point (pI)

56.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 185
AciI CCGC 3 cut(s) 47, 178, 185
AclWI GGATC 2 cut(s) 44, 57
AcuI CTGAAG 1 cut(s) 93
AfeI AGCGCT 1 cut(s) 107
AfiI CCNNNNNNNGG 3 cut(s) 59, 87, 174
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 1 cut(s) 40
AjuI GAANNNNNNNTTGG 2 cut(s) 13, 45
AluBI AGCT 2 cut(s) 7, 332
AluI AGCT 2 cut(s) 7, 332
Alw26I GTCTC 2 cut(s) 146, 368
AlwI GGATC 2 cut(s) 44, 57
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 37
BamHI GGATCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 42
BclI TGATCA 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 146, 368
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 2 cut(s) 179, 186
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 2 cut(s) 180, 187
Bme1390I CCNGG 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 42
BpmI CTGGAG 3 cut(s) 86, 142, 214
Bpu1102I GCTNAGC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 41, 57
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 87, 174
Bse1I ACTGG 2 cut(s) 159, 231
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 41, 57
BseLI CCNNNNNNNGG 3 cut(s) 59, 87, 174
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 159, 231
BseRI GAGGAG 4 cut(s) 31, 120, 123, 317
BseSI GKGCMC 1 cut(s) 37
BseYI CCCAGC 3 cut(s) 7, 151, 216
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 59, 87, 174
BsmAI GTCTC 2 cut(s) 146, 368
BsmBI CGTCTC 1 cut(s) 146
BsnI GGCC 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 37, 151
Bsp143I GATC 2 cut(s) 49, 198
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 3 cut(s) 47, 178, 185
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 2 cut(s) 44, 57
BsrI ACTGG 2 cut(s) 159, 231
BssECI CCNNGG 2 cut(s) 41, 57
BssMI GATC 2 cut(s) 49, 198
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 366
BstC8I GCNNGC 2 cut(s) 65, 183
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 52, 201
BstMAI GTCTC 2 cut(s) 146, 368
BstMBI GATC 2 cut(s) 49, 198
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 65, 183
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 51, 200
DpnII GATC 2 cut(s) 49, 198
EciI GGCGGA 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 151
Eco47III AGCGCT 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 146
FaiI YATR 3 cut(s) 285, 340, 342
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 179, 186
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 179, 186
GlaI GCGC 1 cut(s) 107
GluI GCNGC 2 cut(s) 179, 186
GsaI CCCAGC 3 cut(s) 11, 155, 220
GsuI CTGGAG 3 cut(s) 86, 142, 214
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 63
HhaI GCGC 1 cut(s) 108
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 2 cut(s) 91, 305
Hpy188I TCNGA 2 cut(s) 146, 269
Hpy188III TCNNGA 3 cut(s) 71, 95, 371
HpyAV CCTTC 2 cut(s) 124, 245
HpyCH4III ACNGT 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 189
HspAI GCGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 2 cut(s) 49, 198
LmnI GCTCC 1 cut(s) 4
MaeIII GTNAC 2 cut(s) 76, 233
MalI GATC 2 cut(s) 51, 200
MboI GATC 2 cut(s) 49, 198
MboII GAAGA 2 cut(s) 114, 156
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 2 cut(s) 37, 151
MluCI AATT 4 cut(s) 21, 211, 335, 345
MlyI GAGTC 2 cut(s) 85, 314
MnlI CCTC 7 cut(s) 9, 78, 138, 141, 144, 166, 295
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 2 cut(s) 49, 198
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 76, 233
PdmI GAANNNNTTC 1 cut(s) 366
PkrI GCNGC 2 cut(s) 180, 187
PleI GAGTC 2 cut(s) 85, 313
PpsI GAGTC 2 cut(s) 85, 313
Psp6I CCWGG 1 cut(s) 40
PspFI CCCAGC 3 cut(s) 7, 151, 216
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 49
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 2 cut(s) 179, 186
Sau3AI GATC 2 cut(s) 49, 198
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 2 cut(s) 85, 314
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 2 cut(s) 37, 151
SetI ASST 2 cut(s) 9, 334
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 4 cut(s) 21, 211, 335, 345
SsiI CCGC 3 cut(s) 47, 178, 185
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 366
TaqII GACCGA 1 cut(s) 95
TasI AATT 4 cut(s) 21, 211, 335, 345
TauI GCSGC 2 cut(s) 181, 188
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseFI GTSAC 2 cut(s) 76, 233
Tsp45I GTSAC 2 cut(s) 76, 233
TspGWI ACGGA 3 cut(s) 103, 128, 157
XmnI GAANNNNTTC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.