Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Reverse (-)

12755238 .. 12759225

Gene Structure 3988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022824

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGGTGTTAGTATATCTGGAGAAGATTATGGTGTTAGTATGCAAAGCGCGGCACTGTTGCTAGTTCAAATATATTCATATAATGAATATATTTATCAATACGTGTCCAACGTTGATAGGGTTAGAGCTGCTGAGCTTCGGCAAATACTAGTAGAACTTGGACCGGCGTATATCAAAATCGCTCAGGCTATTTCGTCTCGACCTTCGATCCTCGCCGGAGTTAGATTCAGAATGCGGAGGTCGATTGCGAGTCTGGGTGGGTCCCTCGTCAAAAGCCGAGGGTTTAGCACGAGCTCGTCGCCGGAGAAAATCGTTGCGTCCGTACTCTTCGAGAGGCTCCCGGTTGTTATTCCCAAAATCGACCCCATCGTCTATGCATTTCAGGAGTTCTCGTTTCGGTGGCGACAGCAATACCGACGCAGATATCCAGATGAACTTTTAGACAAGTCTAATGCTAGGGGAAAAGGAGACTACCAAATTGATTATGTACCAGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACTGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGCGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

35.26

Weight (kDa)

9.18

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	368
AccII	CGCG	1 cut(s)	50
AciI	CCGC	3 cut(s)	50, 235, 658
AclI	AACGTT	1 cut(s)	111
AclWI	GGATC	3 cut(s)	202, 509, 601
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	3 cut(s)	324, 489, 638
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	68, 787, 802
AhlI	ACTAGT	1 cut(s)	148
AluBI	AGCT	7 cut(s)	128, 136, 294, 494, 512, 902, 930
AluI	AGCT	7 cut(s)	128, 136, 294, 494, 512, 902, 930
Alw21I	GWGCWC	2 cut(s)	296, 550
Alw26I	GTCTC	4 cut(s)	201, 462, 644, 810
AlwI	GGATC	3 cut(s)	202, 509, 601
AlwNI	CAGNNNCTG	1 cut(s)	674
ApeKI	GCWGC	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	888
AspA2I	CCTAGG	1 cut(s)	691
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	161, 261
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	707, 874
AvaII	GGWCC	2 cut(s)	161, 261
AvrII	CCTAGG	1 cut(s)	691
BanII	GRGCYC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	565
Bbv12I	GWGCWC	2 cut(s)	296, 550
BbvCI	CCTCAGC	1 cut(s)	911
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	3 cut(s)	374, 787, 874
BclI	TGATCA	1 cut(s)	921
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	4 cut(s)	201, 462, 644, 810
BcuI	ACTAGT	1 cut(s)	148
BfaI	CTAG	4 cut(s)	62, 149, 456, 692
BglI	GCCNNNNNGGC	1 cut(s)	616
BisI	GCNGC	2 cut(s)	51, 129
BlnI	CCTAGG	1 cut(s)	691
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	2 cut(s)	52, 130
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	2 cut(s)	161, 261
BmgT120I	GGNCC	2 cut(s)	161, 261
BmiI	GGNNCC	3 cut(s)	262, 263, 338
BmrFI	CCNGG	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	565
BpmI	CTGGAG	1 cut(s)	39
Bpu10I	CCTNAGC	2 cut(s)	183, 911
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	792
BpuMI	CCSGG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	103
BsaJI	CCNNGG	4 cut(s)	277, 497, 691, 867
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 407, 760, 790
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	3 cut(s)	536, 653, 753
BseDI	CCNNGG	4 cut(s)	277, 497, 691, 867
BseGI	GGATG	1 cut(s)	877
BseMI	GCAATG	3 cut(s)	536, 653, 753
BseMII	CTCAG	6 cut(s)	123, 197, 636, 885, 894, 925
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	687
Bsh1236I	CGCG	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	296, 550
BsiSI	CCGG	4 cut(s)	164, 216, 302, 341
BslFI	GGGAC	3 cut(s)	247, 688, 750
BsmAI	GTCTC	4 cut(s)	201, 462, 644, 810
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	3 cut(s)	247, 688, 750
BsmI	GAATGC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	296, 550
Bsp143I	GATC	5 cut(s)	207, 501, 593, 697, 921
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	3 cut(s)	50, 235, 658
BspCNI	CTCAG	6 cut(s)	124, 196, 637, 886, 895, 924
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	262, 263, 338
BspPI	GGATC	3 cut(s)	202, 509, 601
BsrDI	GCAATG	3 cut(s)	536, 653, 753
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	611
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	4 cut(s)	277, 497, 691, 867
BssMI	GATC	5 cut(s)	207, 501, 593, 697, 921
BssSI	CACGAG	1 cut(s)	289
BssT1I	CCWWGG	2 cut(s)	691, 867
Bst2BI	CACGAG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	57, 684
Bst6I	CTCTTC	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstBAI	YACGTR	1 cut(s)	103
BstDEI	CTNAG	6 cut(s)	132, 183, 645, 894, 903, 911
BstDSI	CCRYGG	1 cut(s)	497
BstEII	GGTNACC	1 cut(s)	862
BstF5I	GGATG	1 cut(s)	877
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	5 cut(s)	210, 504, 596, 700, 924
BstMAI	GTCTC	4 cut(s)	201, 462, 644, 810
BstMBI	GATC	5 cut(s)	207, 501, 593, 697, 921
BstMWI	GCNNNNNNNGC	2 cut(s)	616, 674
BstPI	GGTNACC	1 cut(s)	862
BstSCI	CCNGG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	565
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BtgI	CCRYGG	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	877
BtsIMutI	CAGTG	2 cut(s)	53, 504
CaiI	CAGNNNCTG	1 cut(s)	674
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	161, 261
CseI	GACGC	2 cut(s)	306, 426
Csp6I	GTAC	3 cut(s)	323, 488, 637
CviAII	CATG	1 cut(s)	590
CviQI	GTAC	3 cut(s)	323, 488, 637
DdeI	CTNAG	6 cut(s)	132, 183, 645, 894, 903, 911
DpnI	GATC	5 cut(s)	209, 503, 595, 699, 923
DpnII	GATC	5 cut(s)	207, 501, 593, 697, 921
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	691, 867
Eco24I	GRGCYC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	161, 261
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	528
Eco91I	GGTNACC	1 cut(s)	862
EcoICRI	GAGCTC	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	261
EcoO65I	GGTNACC	1 cut(s)	862
EcoRV	GATATC	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	691, 867
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	691, 867
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	1 cut(s)	593
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	3 cut(s)	247, 688, 750
FatI	CATG	1 cut(s)	589
FbaI	TGATCA	1 cut(s)	921
Fnu4HI	GCNGC	2 cut(s)	51, 129
FokI	GGATG	1 cut(s)	884
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	51, 129
FspBI	CTAG	4 cut(s)	62, 149, 456, 692
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	2 cut(s)	51, 129
GsuI	CTGGAG	1 cut(s)	39
HapII	CCGG	4 cut(s)	164, 216, 302, 341
HgaI	GACGC	2 cut(s)	306, 426
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	593
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	6 cut(s)	225, 250, 641, 671, 752, 773
HpaII	CCGG	4 cut(s)	164, 216, 302, 341
HphI	GGTGA	2 cut(s)	707, 874
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	2 cut(s)	230, 646
Hpy188III	TCNNGA	7 cut(s)	18, 198, 331, 383, 428, 626, 893
Hpy8I	GTNNAC	1 cut(s)	637
Hpy99I	CGWCG	2 cut(s)	301, 420
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	2 cut(s)	57, 684
HpyCH4IV	ACGT	2 cut(s)	102, 111
HpyCH4V	TGCA	7 cut(s)	43, 377, 541, 668, 677, 746, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	616, 674
HpyF3I	CTNAG	6 cut(s)	132, 183, 645, 894, 903, 911
HpySE526I	ACGT	2 cut(s)	102, 111
Hsp92II	CATG	1 cut(s)	593
HspAI	GCGC	1 cut(s)	48
KflI	GGGWCCC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	921
Kzo9I	GATC	5 cut(s)	207, 501, 593, 697, 921
LmnI	GCTCC	3 cut(s)	342, 499, 733
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	4 cut(s)	62, 149, 456, 692
MaeII	ACGT	2 cut(s)	102, 111
MaeIII	GTNAC	3 cut(s)	581, 766, 862
MalI	GATC	5 cut(s)	209, 503, 595, 699, 923
MboI	GATC	5 cut(s)	207, 501, 593, 697, 921
MboII	GAAGA	4 cut(s)	35, 319, 560, 570
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	296, 550
MluCI	AATT	4 cut(s)	477, 791, 834, 875
MlyI	GAGTC	4 cut(s)	259, 650, 761, 767
MmeI	TCCRAC	2 cut(s)	132, 700
MnlI	CCTC	8 cut(s)	221, 231, 272, 275, 327, 640, 841, 920
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	888
MseI	TTAA	1 cut(s)	830
MspI	CCGG	4 cut(s)	164, 216, 302, 341
MspR9I	CCNGG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	237
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	616, 674
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	5 cut(s)	207, 501, 593, 697, 921
NlaIII	CATG	1 cut(s)	593
NlaIV	GGNNCC	3 cut(s)	262, 263, 338
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	2 cut(s)	766, 862
NsiI	ATGCAT	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	3 cut(s)	108, 318, 366
PctI	GAATGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	888
PfeI	GAWTC	2 cut(s)	225, 671
PkrI	GCNGC	2 cut(s)	52, 130
PleI	GAGTC	4 cut(s)	258, 649, 760, 767
PpsI	GAGTC	4 cut(s)	258, 649, 760, 767
Ppu21I	YACGTR	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	296
Psp1406I	AACGTT	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	261
PspEI	GGTNACC	1 cut(s)	862
PspN4I	GGNNCC	3 cut(s)	262, 263, 338
PspPI	GGNCC	2 cut(s)	161, 261
PspPPI	RGGWCCY	1 cut(s)	261
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	593
RsaI	GTAC	3 cut(s)	324, 489, 638
RsaNI	GTAC	3 cut(s)	323, 488, 637
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	830
SatI	GCNGC	2 cut(s)	51, 129
Sau3AI	GATC	5 cut(s)	207, 501, 593, 697, 921
Sau96I	GGNCC	2 cut(s)	161, 261
SchI	GAGTC	4 cut(s)	259, 650, 761, 767
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	2 cut(s)	296, 550
SinI	GGWCC	2 cut(s)	161, 261
SmlI	CTYRAG	1 cut(s)	807
SmoI	CTYRAG	1 cut(s)	807
SpeI	ACTAGT	1 cut(s)	148
Sse9I	AATT	4 cut(s)	477, 791, 834, 875
SsiI	CCGC	3 cut(s)	50, 235, 658
SspI	AATATT	1 cut(s)	887
SspMI	CTAG	4 cut(s)	62, 149, 456, 692
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	339
StyI	CCWWGG	2 cut(s)	691, 867
TaaI	ACNGT	2 cut(s)	57, 684
TaiI	ACGT	2 cut(s)	105, 114
TaqI	TCGA	5 cut(s)	199, 206, 242, 330, 360
TaqII	GACCGA	1 cut(s)	785
TasI	AATT	4 cut(s)	477, 791, 834, 875
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	225, 671
Tru1I	TTAA	1 cut(s)	830
Tru9I	TTAA	1 cut(s)	830
TscAI	CASTG	2 cut(s)	60, 511
TseFI	GTSAC	2 cut(s)	766, 862
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	2 cut(s)	766, 862
TspDTI	ATGAA	4 cut(s)	66, 99, 447, 888
TspGWI	ACGGA	2 cut(s)	310, 514
TspRI	CASTG	2 cut(s)	60, 511
VpaK11BI	GGWCC	2 cut(s)	161, 261
XmaJI	CCTAGG	1 cut(s)	691
XmnI	GAANNNNTTC	1 cut(s)	888
XspI	CTAG	4 cut(s)	62, 149, 456, 692
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.