Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Forward (+)

10887650 .. 10890181

Gene Structure 2532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCGGAGGTCGATTGCGAGTCTGGGTGGGTCCGTCGTGAAGAGCCGAGGGTTTAGCACGAGCTCGTCGCCGGAGAAAATCGTCGCGTCCGTACTCTTCGAGAGGCTTCCGGTTGTTATTCCCAAAATCGACCCCATCGTCTATGCATTTCAGGAGTTCTCGTTTCGGTGGCGACAGCAATATCGACGCAGATATCCGGACGAACTTTTAGACAAGTCTAATGCTAGGGGAAAAGGAGACTATCAAATTGATTATGTACCGGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCACTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACAGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGAGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCCGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.76

Weight (kDa)

9.07

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	2 cut(s)	4, 427
AclWI	GGATC	2 cut(s)	278, 370
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	3 cut(s)	93, 258, 407
AgsI	TTSAA	2 cut(s)	556, 571
AluBI	AGCT	4 cut(s)	63, 281, 671, 699
AluI	AGCT	4 cut(s)	63, 281, 671, 699
Alw21I	GWGCWC	2 cut(s)	65, 319
Alw26I	GTCTC	3 cut(s)	231, 413, 579
AlwI	GGATC	2 cut(s)	278, 370
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	662
Aor13HI	TCCGGA	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	657
AspA2I	CCTAGG	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	476, 643
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	30
AvrII	CCTAGG	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	334
Bbv12I	GWGCWC	2 cut(s)	65, 319
BbvCI	CCTCAGC	1 cut(s)	680
BccI	CCATC	3 cut(s)	143, 556, 643
BclI	TGATCA	1 cut(s)	690
BcoDI	GTCTC	3 cut(s)	231, 413, 579
BfaI	CTAG	2 cut(s)	225, 461
BfmI	CTRYAG	1 cut(s)	308
BglI	GCCNNNNNGGC	1 cut(s)	385
BlnI	CCTAGG	1 cut(s)	460
Bme18I	GGWCC	1 cut(s)	30
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	31, 264
BpiI	GAAGAC	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	561
BsaJI	CCNNGG	4 cut(s)	46, 266, 460, 636
BsaWI	WCCGGW	2 cut(s)	109, 196
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 529, 559
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	2 cut(s)	422, 522
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	4 cut(s)	46, 266, 460, 636
BseGI	GGATG	1 cut(s)	646
BseMI	GCAATG	2 cut(s)	422, 522
BseMII	CTCAG	3 cut(s)	405, 663, 694
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	65, 319
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	4 cut(s)	71, 110, 197, 260
BslFI	GGGAC	2 cut(s)	457, 519
BsmAI	GTCTC	3 cut(s)	231, 413, 579
BsmFI	GGGAC	2 cut(s)	457, 519
BsoBI	CYCGRG	1 cut(s)	662
Bsp1286I	GDGCHC	2 cut(s)	65, 319
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	270, 362, 466, 690
BspACI	CCGC	2 cut(s)	4, 427
BspCNI	CTCAG	3 cut(s)	406, 664, 693
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	31, 264
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	2 cut(s)	278, 370
BspQI	GCTCTTC	1 cut(s)	35
BsrDI	GCAATG	2 cut(s)	422, 522
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	46, 266, 460, 636
BssMI	GATC	4 cut(s)	270, 362, 466, 690
BssSI	CACGAG	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	460, 636
Bst2BI	CACGAG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	2 cut(s)	35, 101
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstDEI	CTNAG	3 cut(s)	414, 672, 680
BstDSI	CCRYGG	1 cut(s)	266
BstEII	GGTNACC	1 cut(s)	631
BstF5I	GGATG	1 cut(s)	646
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	4 cut(s)	273, 365, 469, 693
BstMAI	GTCTC	3 cut(s)	231, 413, 579
BstMBI	GATC	4 cut(s)	270, 362, 466, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 443
BstPI	GGTNACC	1 cut(s)	631
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	646
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	273, 305
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	2 cut(s)	75, 195
Csp6I	GTAC	3 cut(s)	92, 257, 406
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	8 cut(s)	45, 63, 106, 263, 281, 379, 671, 699
CviKI_1	RGCY	8 cut(s)	45, 63, 106, 263, 281, 379, 671, 699
CviQI	GTAC	3 cut(s)	92, 257, 406
DdeI	CTNAG	3 cut(s)	414, 672, 680
DpnI	GATC	4 cut(s)	272, 364, 468, 692
DpnII	GATC	4 cut(s)	270, 362, 466, 690
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	2 cut(s)	35, 101
EarI	CTCTTC	2 cut(s)	35, 101
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	460, 636
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	662
Eco91I	GGTNACC	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	631
EcoRV	GATATC	1 cut(s)	194
EcoT14I	CCWWGG	2 cut(s)	460, 636
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	2 cut(s)	460, 636
FaeI	CATG	1 cut(s)	362
FaiI	YATR	7 cut(s)	144, 255, 348, 360, 481, 503, 510
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	2 cut(s)	457, 519
FatI	CATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	690
FokI	GGATG	1 cut(s)	653
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	225, 461
HapII	CCGG	4 cut(s)	71, 110, 197, 260
HgaI	GACGC	2 cut(s)	75, 195
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	5 cut(s)	19, 410, 440, 521, 542
HpaII	CCGG	4 cut(s)	71, 110, 197, 260
HphI	GGTGA	2 cut(s)	476, 643
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	415, 529
Hpy188III	TCNNGA	6 cut(s)	37, 100, 152, 197, 395, 662
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	4 cut(s)	38, 70, 86, 189
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	6 cut(s)	146, 310, 437, 446, 515, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 443
HpyF3I	CTNAG	3 cut(s)	414, 672, 680
Hsp92II	CATG	1 cut(s)	362
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	270, 362, 466, 690
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	2 cut(s)	268, 502
LpnPI	CCDG	9 cut(s)	8, 84, 123, 137, 210, 273, 370, 393, 408
MaeI	CTAG	2 cut(s)	225, 461
MaeIII	GTNAC	4 cut(s)	303, 350, 535, 631
MalI	GATC	4 cut(s)	272, 364, 468, 692
MboI	GATC	4 cut(s)	270, 362, 466, 690
MboII	GAAGA	4 cut(s)	52, 88, 329, 339
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	65, 319
MluCI	AATT	4 cut(s)	246, 560, 603, 644
MlyI	GAGTC	4 cut(s)	28, 419, 530, 536
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	5 cut(s)	41, 96, 409, 610, 689
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	1 cut(s)	599
MspI	CCGG	4 cut(s)	71, 110, 197, 260
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	385, 443
NdeII	GATC	4 cut(s)	270, 362, 466, 690
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	2 cut(s)	31, 264
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	3 cut(s)	303, 535, 631
NsiI	ATGCAT	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 135
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	440
PleI	GAGTC	4 cut(s)	27, 418, 529, 536
PpsI	GAGTC	4 cut(s)	27, 418, 529, 536
Psp124BI	GAGCTC	1 cut(s)	65
PspEI	GGTNACC	1 cut(s)	631
PspN4I	GGNNCC	2 cut(s)	31, 264
PspPI	GGNCC	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	3 cut(s)	93, 258, 407
RsaNI	GTAC	3 cut(s)	92, 257, 406
SacI	GAGCTC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	599
Sau3AI	GATC	4 cut(s)	270, 362, 466, 690
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	4 cut(s)	28, 419, 530, 536
SduI	GDGCHC	2 cut(s)	65, 319
SetI	ASST	6 cut(s)	11, 65, 283, 466, 673, 701
SfcI	CTRYAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	4 cut(s)	246, 560, 603, 644
SsiI	CCGC	2 cut(s)	4, 427
SspI	AATATT	1 cut(s)	656
SspMI	CTAG	2 cut(s)	225, 461
SstI	GAGCTC	1 cut(s)	65
StyI	CCWWGG	2 cut(s)	460, 636
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	4 cut(s)	11, 99, 129, 184
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	4 cut(s)	246, 560, 603, 644
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	2 cut(s)	280, 312
TseFI	GTSAC	3 cut(s)	303, 535, 631
Tsp45I	GTSAC	3 cut(s)	303, 535, 631
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	3 cut(s)	22, 79, 283
TspRI	CASTG	2 cut(s)	280, 312
VpaK11BI	GGWCC	1 cut(s)	30
XmaJI	CCTAGG	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	2 cut(s)	225, 461
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.