Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Reverse (-)

17430905 .. 17433879

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCGGAGATCGATCGCGAGCCTGGGCGAGTCCCTAGGCCGAGGGTTCAACACGACCTCGTCGTCGGAGAAAATCGTCGCCTCCGTACTCTTCGAGAGGCTCCCGGTCGTTATCCCCAGAATCGACCCCGTCGTCTATGCATTTCAGGAGTTCTCGTTTCGGTGGCGACAGCAATATCGACGCAGATATCCGGATGAATTGTTAGACAAGTCTAATGCTAGGGGAAAAGGAGACTACCAAATTGATTATGTACCAGCTCCGCGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGTAGACTTTATCTTCTTATCTATGGTAACACTTATGGATCCCCTGCTGGAAAACCAGTCTGGCATTTTCCAGAAAAAGTTTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCGTTACAGTCTGTCCTAGGTGATCTATCCCACACATATTTTGTTGGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGAGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACGAACAAGTTGAAAATTGGGAAGTGTGATGATTTTGTTTGGGTGACCAAGGATGAGTTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

26.54

Weight (kDa)

8.39

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	61, 131
AccI	GTMKAC	1 cut(s)	322
AccII	CGCG	2 cut(s)	17, 262
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	4 cut(s)	4, 260, 262, 421
AclWI	GGATC	3 cut(s)	272, 351, 364
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	2 cut(s)	87, 252
AgsI	TTSAA	4 cut(s)	49, 550, 565, 595
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	4 cut(s)	257, 275, 665, 693
AluI	AGCT	4 cut(s)	257, 275, 665, 693
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	3 cut(s)	225, 407, 573
AlwI	GGATC	3 cut(s)	272, 351, 364
AlwNI	CAGNNNCTG	1 cut(s)	437
Aor13HI	TCCGGA	1 cut(s)	190
AoxI	GGCC	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	651
AspA2I	CCTAGG	2 cut(s)	34, 454
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	470, 637
AvrII	CCTAGG	2 cut(s)	34, 454
BamHI	GGATCC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	313
BbvCI	CCTCAGC	1 cut(s)	674
BccI	CCATC	2 cut(s)	550, 637
BciT130I	CCWGG	1 cut(s)	23
BclI	TGATCA	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	3 cut(s)	225, 407, 573
BfaI	CTAG	3 cut(s)	35, 219, 455
BlnI	CCTAGG	2 cut(s)	34, 454
Bme1390I	CCNGG	2 cut(s)	23, 104
BmiI	GGNNCC	2 cut(s)	101, 358
BmrFI	CCNGG	2 cut(s)	23, 104
Bpu10I	CCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	11
BsaJI	CCNNGG	6 cut(s)	22, 34, 40, 260, 454, 630
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 523, 553
Bse1I	ACTGG	1 cut(s)	374
Bse3DI	GCAATG	3 cut(s)	299, 416, 516
BseAI	TCCGGA	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	23
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	6 cut(s)	22, 34, 40, 260, 454, 630
BseGI	GGATG	2 cut(s)	199, 640
BseMI	GCAATG	3 cut(s)	299, 416, 516
BseMII	CTCAG	4 cut(s)	399, 648, 657, 688
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	425
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	2 cut(s)	17, 262
Bsh1285I	CGRYCG	2 cut(s)	15, 108
BshFI	GGCC	1 cut(s)	39
BshVI	ATCGAT	1 cut(s)	11
BsiEI	CGRYCG	2 cut(s)	15, 108
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	104, 191
BslFI	GGGAC	2 cut(s)	16, 513
BsmAI	GTCTC	3 cut(s)	225, 407, 573
BsmFI	GGGAC	2 cut(s)	16, 513
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	6 cut(s)	8, 12, 264, 356, 460, 684
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	4 cut(s)	4, 260, 262, 421
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	4 cut(s)	400, 649, 658, 687
BspDI	ATCGAT	1 cut(s)	11
BspEI	TCCGGA	1 cut(s)	190
BspFNI	CGCG	2 cut(s)	17, 262
BspLI	GGNNCC	2 cut(s)	101, 358
BspPI	GGATC	3 cut(s)	272, 351, 364
BsrDI	GCAATG	3 cut(s)	299, 416, 516
BsrI	ACTGG	1 cut(s)	374
BssECI	CCNNGG	6 cut(s)	22, 34, 40, 260, 454, 630
BssMI	GATC	6 cut(s)	8, 12, 264, 356, 460, 684
BssT1I	CCWWGG	3 cut(s)	34, 454, 630
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	320, 447
Bst6I	CTCTTC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	4 cut(s)	408, 657, 666, 674
BstDSI	CCRYGG	1 cut(s)	260
BstEII	GGTNACC	1 cut(s)	625
BstF5I	GGATG	2 cut(s)	199, 640
BstFNI	CGCG	2 cut(s)	17, 262
BstKTI	GATC	6 cut(s)	11, 15, 267, 359, 463, 687
BstMAI	GTCTC	3 cut(s)	225, 407, 573
BstMBI	GATC	6 cut(s)	8, 12, 264, 356, 460, 684
BstMCI	CGRYCG	2 cut(s)	15, 108
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	1 cut(s)	23
BstPI	GGTNACC	1 cut(s)	625
BstSCI	CCNGG	2 cut(s)	21, 102
BstUI	CGCG	2 cut(s)	17, 262
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	39
BsuTUI	ATCGAT	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	199, 640
BtsIMutI	CAGTG	1 cut(s)	267
BtuMI	TCGCGA	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	437
Cfr42I	CCGCGG	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	11
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	86, 251
CviJI	RGCY	7 cut(s)	21, 39, 100, 257, 275, 665, 693
CviKI_1	RGCY	7 cut(s)	21, 39, 100, 257, 275, 665, 693
CviQI	GTAC	2 cut(s)	86, 251
DdeI	CTNAG	4 cut(s)	408, 657, 666, 674
DpnI	GATC	6 cut(s)	10, 14, 266, 358, 462, 686
DpnII	GATC	6 cut(s)	8, 12, 264, 356, 460, 684
DrdI	GACNNNNNNGTC	2 cut(s)	61, 131
DseDI	GACNNNNNNGTC	2 cut(s)	61, 131
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	3 cut(s)	34, 454, 630
Eco32I	GATATC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	291
Eco91I	GGTNACC	1 cut(s)	625
EcoO65I	GGTNACC	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	21
EcoRV	GATATC	1 cut(s)	188
EcoT14I	CCWWGG	3 cut(s)	34, 454, 630
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	3 cut(s)	34, 454, 630
FaiI	YATR	7 cut(s)	138, 249, 342, 354, 475, 497, 504
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	2 cut(s)	16, 513
FbaI	TGATCA	1 cut(s)	684
FblI	GTMKAC	1 cut(s)	322
FokI	GGATG	2 cut(s)	206, 647
FspBI	CTAG	3 cut(s)	35, 219, 455
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	2 cut(s)	104, 191
HgaI	GACGC	1 cut(s)	189
HinfI	GANTC	6 cut(s)	29, 120, 404, 434, 515, 536
HpaII	CCGG	2 cut(s)	104, 191
HphI	GGTGA	2 cut(s)	470, 637
Hpy166II	GTNNAC	2 cut(s)	323, 400
Hpy188I	TCNGA	3 cut(s)	67, 409, 523
Hpy188III	TCNNGA	6 cut(s)	16, 94, 146, 191, 389, 656
Hpy8I	GTNNAC	2 cut(s)	323, 400
Hpy99I	CGWCG	5 cut(s)	64, 67, 80, 134, 183
HpyCH4III	ACNGT	2 cut(s)	320, 447
HpyCH4V	TGCA	5 cut(s)	140, 304, 431, 509, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	4 cut(s)	408, 657, 666, 674
Kpn2I	TCCGGA	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	684
KspI	CCGCGG	1 cut(s)	263
Kzo9I	GATC	6 cut(s)	8, 12, 264, 356, 460, 684
LmnI	GCTCC	3 cut(s)	105, 262, 496
MaeI	CTAG	3 cut(s)	35, 219, 455
MaeIII	GTNAC	4 cut(s)	344, 441, 529, 625
MalI	GATC	6 cut(s)	10, 14, 266, 358, 462, 686
MboI	GATC	6 cut(s)	8, 12, 264, 356, 460, 684
MboII	GAAGA	2 cut(s)	82, 323
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	4 cut(s)	197, 240, 554, 597
MlyI	GAGTC	4 cut(s)	38, 413, 524, 530
MmeI	TCCRAC	2 cut(s)	45, 463
MnlI	CCTC	6 cut(s)	35, 67, 90, 91, 403, 683
Mph1103I	ATGCAT	1 cut(s)	142
MroI	TCCGGA	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	2 cut(s)	104, 191
MspR9I	CCNGG	2 cut(s)	23, 104
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	2 cut(s)	17, 262
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	6 cut(s)	8, 12, 264, 356, 460, 684
NlaIV	GGNNCC	2 cut(s)	101, 358
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	2 cut(s)	529, 625
NruI	TCGCGA	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	3 cut(s)	59, 81, 129
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	2 cut(s)	120, 434
PflFI	GACNNNGTC	2 cut(s)	58, 128
Ple19I	CGATCG	1 cut(s)	15
PleI	GAGTC	4 cut(s)	37, 412, 523, 530
PpsI	GAGTC	4 cut(s)	37, 412, 523, 530
Psp6I	CCWGG	1 cut(s)	21
PspEI	GGTNACC	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	101, 358
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	356
PsyI	GACNNNGTC	2 cut(s)	58, 128
PvuI	CGATCG	1 cut(s)	15
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	2 cut(s)	87, 252
RsaNI	GTAC	2 cut(s)	86, 251
SacII	CCGCGG	1 cut(s)	263
Sau3AI	GATC	6 cut(s)	8, 12, 264, 356, 460, 684
SchI	GAGTC	4 cut(s)	38, 413, 524, 530
ScrFI	CCNGG	2 cut(s)	23, 104
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	6 cut(s)	59, 259, 277, 460, 667, 695
Sfr303I	CCGCGG	1 cut(s)	263
SgrBI	CCGCGG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	4 cut(s)	197, 240, 554, 597
SsiI	CCGC	4 cut(s)	4, 260, 262, 421
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	3 cut(s)	35, 219, 455
StyD4I	CCNGG	2 cut(s)	21, 102
StyI	CCWWGG	3 cut(s)	34, 454, 630
TaaI	ACNGT	2 cut(s)	320, 447
TaqI	TCGA	4 cut(s)	11, 93, 123, 178
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	4 cut(s)	197, 240, 554, 597
TfiI	GAWTC	2 cut(s)	120, 434
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	529, 625
Tsp45I	GTSAC	2 cut(s)	529, 625
TspDTI	ATGAA	1 cut(s)	210
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	274
Tth111I	GACNNNGTC	2 cut(s)	58, 128
XmaJI	CCTAGG	2 cut(s)	34, 454
XmiI	GTMKAC	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	3 cut(s)	35, 219, 455
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.